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FORMULATION D'UN GEL OXYDANT À MATRICE ORGANIQUE APPLICABLE À LA DÉCONTAMINATION NUCLÉAIRE : PROPRIÉTÉS RHÉOLOGIQUES, ACIDO-BASIQUES ET OZONOLYSE DE LA MATRICERouy, Emmanuel 20 October 2003 (has links) (PDF)
Un gel fortement acide et oxydant, à matrice purement organique, a été formulé dans l'objectif de l'appliquer sur des parois métalliques contaminées par des radioéléments. Les propriétés rhéologiques pertinentes au regard de l'application envisagée (caractère rhéofluidifiant, thixotropie, seuil d'écoulement...) ont été analysées dans différents milieux : purement aqueux, acide (HNO3 2 mol/kg), acide et cérique ( (NH4)2Ce(NO3)6 1 mol/kg). La matrice organique utilisée, le xanthane, présente pour de faibles concentrations massiques (1 à 2 %) des caractéristiques exceptionnelles dans de tels milieux, même si sa résistance à l'oxydation est limitée à quelques heures. La complexation des sites polaires du polymère par les espèces cériques nous a ensuite amené à explorer les propriétés acido-basiques du xanthane par potentiométrie et RMN du proton. Enfin, un dispositif d'ozonolyse a été mis en œuvre afin d'éliminer la matière organique résiduelle contenue dans les effluents issus du traitement décontaminant. Cette technique s'est révélé efficace en milieu acide mais limitée en milieu acide et cérique. Ce dernier aspect mérite d'être approfondi en vue d'une utilisation dans l'industrie nucléaire.
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Protein folding studies of human superoxide dismutase and ALS associated mutantsLindberg, Mikael January 2004 (has links)
<p>Proteins are among the most abundant biological macromolecules. The cellular machinery is coupled to exact structural shape and properties of the more than 100 000 different proteins. Still, proteins can sometimes completely change their character and as a result trigger neuro degenerative disease. Exactly what happens is yet poorly understood but misfolding and aggregation leading to toxic gain of function is probable causes, i.e. the protein adopts new noxious properties. In 1993 the protein superoxide dismutase (SOD) was found to be associated with the neuro degenerative disease ALS. Up to date more than 100 mutations in SOD have been associated with ALS. However, the mutations are scattered all over the structure and no common denominator for the disease mechanism has been found. </p><p>This work has been focused on the molecular mechanism of the toxic gain-of - function of mutant SOD from the perspective of protein folding and structural stability. To facilitate the studies of SOD and its ALS associated mutations, an expression system resulting in increased copper content was developed. Coexpression with the copper chaperone for superoxide dismutase (yCCS) leads to increased expression levels, especially for the destabilised ALS mutants. Through thermodynamic studies, I show that with the exception of the most disruptive mutations the holo protein is only marginally destabilised, whereas all mutations show a pronounced destabilisation on the apo protein. Kinetic studies suggest further that the dimeric apoSOD folds via a three-state process where the dimerisation proceeds via a marginally stable monomer. The apoSOD monomer folds by a two-state process. The disulphide bond is not critical for the folding of the apoSOD monomer although it contributes significantly to its stability. Interestingly, in the absence of metals, reduction of the disulphide bond prevents the formation of the dimer. A mutation can affect the protein stability in various ways: either from destabilisation of the monomer (case 1), weakening of the dimer interface (case 2) or, in the worst case, from a combination of both (case 1+2). Thus, therapeutic strategies to prevent the noxious effects of mutant SOD must include both mechanisms. An important finding in this study is that we can see a correlation between the stability for each mutation and the mean survival time. This could be an opening in the development of therapeutic substances that counteract the defect in SOD upon mutation.</p>
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Protein folding studies of human superoxide dismutase and ALS associated mutantsLindberg, Mikael January 2004 (has links)
Proteins are among the most abundant biological macromolecules. The cellular machinery is coupled to exact structural shape and properties of the more than 100 000 different proteins. Still, proteins can sometimes completely change their character and as a result trigger neuro degenerative disease. Exactly what happens is yet poorly understood but misfolding and aggregation leading to toxic gain of function is probable causes, i.e. the protein adopts new noxious properties. In 1993 the protein superoxide dismutase (SOD) was found to be associated with the neuro degenerative disease ALS. Up to date more than 100 mutations in SOD have been associated with ALS. However, the mutations are scattered all over the structure and no common denominator for the disease mechanism has been found. This work has been focused on the molecular mechanism of the toxic gain-of - function of mutant SOD from the perspective of protein folding and structural stability. To facilitate the studies of SOD and its ALS associated mutations, an expression system resulting in increased copper content was developed. Coexpression with the copper chaperone for superoxide dismutase (yCCS) leads to increased expression levels, especially for the destabilised ALS mutants. Through thermodynamic studies, I show that with the exception of the most disruptive mutations the holo protein is only marginally destabilised, whereas all mutations show a pronounced destabilisation on the apo protein. Kinetic studies suggest further that the dimeric apoSOD folds via a three-state process where the dimerisation proceeds via a marginally stable monomer. The apoSOD monomer folds by a two-state process. The disulphide bond is not critical for the folding of the apoSOD monomer although it contributes significantly to its stability. Interestingly, in the absence of metals, reduction of the disulphide bond prevents the formation of the dimer. A mutation can affect the protein stability in various ways: either from destabilisation of the monomer (case 1), weakening of the dimer interface (case 2) or, in the worst case, from a combination of both (case 1+2). Thus, therapeutic strategies to prevent the noxious effects of mutant SOD must include both mechanisms. An important finding in this study is that we can see a correlation between the stability for each mutation and the mean survival time. This could be an opening in the development of therapeutic substances that counteract the defect in SOD upon mutation.
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Biophysical Characterization of Synthetic Imidazole and Pyrrole Containing Analogues of Netropsin and Distamycin that Target Specific DNA Sequences for the Treatment of Various DiseasesRamos, Joseph P 11 December 2012 (has links)
The development of small-molecules which target nucleic acids, more specifically the minor groove of DNA, in a sequence specific manner and control gene expression are currently being investigated as potential therapeutic compounds for the treatment of various diseases, including cancer, as well as viral and bacterial infections. The naturally occurring compounds netropsin and distamycin have been shown to demonstrate antitumor and antibacterial properties. Currently, there are synthetic efforts to create pyrrole and imidazole-containing polyamide derivatives of netropsin and distamycin that show potential as medicinal agents. Synthetic pyrrole and imidazole-containing polyamides are potentially useful for targeting and modulating the expression of genes, including those associated with cancer cell growth.
The key challenges that must be overcome to realize this goal of using synthetic polyamides in the treatment of disease are the development of polyamides with low molar mass so the molecules can readily diffuse into cells and concentrate in the nucleus. In addition, the molecules must have appreciable water solubility, bind DNA sequence specifically, and with high affinity. As part of a systematic study within the authors’ laboratory, our goal is to develop polyamides which can be synthesized readily yet possess excellent sequence specificity, stronger binding affinity, high solubility in biological media and enhanced cell penetration and nuclear localization properties.
There is a need to develop a library of modified polyamides which target DNA and exhibit improved biological properties. The present study is a systematic examination of the binding properties of various modified synthetic polyamide compounds. The synthetic polyamide derivatives presented have more potential as therapeutic candidates over other synthetic polyamides because of their increased water solubility, smaller molecular weights, and molecular design, thus, allowing them to penetrate into cells and localize in the nucleus.
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Influences of Firework Displays on Ambient Air Quality during the Lantern Festival in Kaohsiung CityChien, Li-hsing 10 August 2010 (has links)
In recent years, the celebration activities of various types of folk-custom festivals in Taiwan have already been getting more and more attention from civilians. Festivities throughout the whole island are traditionally accompanied by loud and brightly colored firework displays. Among these activities, the firework display during the Chinese Lantern Festival in Kaohsiung City is one of the largest festivals in Taiwan every year. Therefore, it is important to investigate the influences of firework displays on ambient air quality during the Chinese Lantern Festival in Kaohsiung City.
Field measurement of ambient gaseous pollutants and particulate matter (PM) was conducted on February 9-12, 2009, the Chinese Lantern Festival, in Kaohsiung City. Moreover, three kinds of firework powders obtained from the same factory producing Kaohsiung Lantern Festival fireworks were burned in a combustion chamber to determine the physicochemical properties of firework aerosols. Metallic elements were analyzed with an inductively coupled plasma-atomic emission spectrometer (ICP-AES). Ionic species and carbonaceous contents in the PM samples were analyzed with an ion chromatography (IC) and an elemental analyzer (EA), respectively. Finally, the source identification and apportionment of PM were analyzed by principal component analysis (PCA), enrichment factor (EF), and receptor modeling (CMB).
For inorganic gaseous pollutants, the concentration peaks of NO, NO2, O3, CO were observed during the firework periods, and the concentration peak of NO was approximately 8.8 times higher than those during the non-firework periods. This study further revealed that, even at nighttime, ambient O3 could be reduced dramatically during the firework periods, whenas NO2 concentration increased concurrently, due to titration effects resulting from the prompt reaction of NO with O3 to form NO2 and O2. For organic gaseous pollutants, the concentration peak of toluene during the firework periods was approximately 2.2-4.1 times higher than those during the non-firework periods.
Several metallic elements of PM during the firework display periods were obviously higher than those during the non-firework periods. On February 10, the concentrations of Mg, K, Pb, and Sr in PM2.5 were 10 times higher than those during the non-firework periods. Besides, the Cl-/Na+ ratio was slightly smaller than 1 in Kaohsiung Harbor, but it was approximately 3 during the firework display periods since Cl- came form chlorine content in firework aerosols at this time. Moreover, OC/EC ratio increased up to 2.8.
In addition to the analysis of gaseous pollutants and PM during the Chinese Lantern Festival in Kaohsiung City, this study burned firework powders in a self-designed combustion chamber to measure the physicochemical properties of firework aerosols. In the results, K, Mg, Cl-, OC were major contents (<10%) in the aerosols produced from the burning firework powders. Moreover, Cl-/Na+ and OC/EC ratio were 15.0~23.4 and 2.9~3.2, respectively. Consequently, Cl-/Na+ and OC/EC ratio can be used as two important indicators of firework displays.
Results obtained from PCA and CMB receptor modeling showed that the major sources of aerosols during the firework display periods were firework displays, motor/diesel vehicle exhanst, soil dusts, and marine aerosols. Besides, the firework displays on February 10 contributed approximately 25.2% and 16.6% of PM10 at two sampling sites, respectively.
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Daytime polysomnography and portable recording device for diagnosis and CPAP therapy in patients with obstructive sleep apnea syndromeKoike, Yasuo, Nakata, Seiichi, 宮田, 聖子, Miyata, Seiko, Noda, Akiko, Yagi, Hidehito, Yanagi, Eriko, Honda, Kumiko, Sugiura, Tatsuki, Nakai, Shigeru, Nakashima, Tsutomu 13 June 2007 (has links)
名古屋大学博士学位論文 学位の種類:博士(医療技術学)(課程) 学位授与年月日:平成19年3月23日 / "Daytime polysomnography and portable recording device for diagnosis and CPAP therapy in patients with obstructive sleep apnea syndrome" Sleep and Breathing, v.11, n.2 (2007) pp.109-115 を、博士論文として提出したもの。
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ETUDE DE LA SOLUBILISATION DES PRODUITS ORGANIQUES A FAIBLE MASSE MOLECULAIRE DANS UN SYSTEME MICELLAIREChaghi, Radhouane 25 June 2007 (has links) (PDF)
Le but de ce travail est la compréhension du mécanisme de la solubilisation micellaire de molécules organiques modèle de faible masse moléculaire et d'une solubilité limitée dans l'eau. Les interactions entre ces molécules organiques<br />(Phénol, butanol, heptanol et acide heptanoïque) et les micelles du tensioactif cationique le bromure d'hexadécyltriméthylammonium (CTAB) au voisinage de la concentration micellaire critique et à de faibles concentrations en solutés ont été caractérisées avec différentes techniques expérimentales : La RMN du 1H, la microcalorimétrie de titration, la conductivité spécifique et la spectroscopie UV. La localisation et l'orientation des solutés modèle dans la micelle ont été déterminées.<br />La solubilisation de ces molécules dans un système micellaire varie selon la composition du mélange. En effet, les interactions tensioactif-soluté, qui sont très faibles et difficiles à détecter, nécessitent pour être étudiées des techniques expérimentales sensibles et précises (RMN 1H et microcalorimétrie de titration).<br />L'exploitation des résultats obtenus a fourni des indications sur la localisation et l'orientation du Phénol à l'intérieur de la micelle. Ces résultats confirment que le Phénol, pour de faibles molalités, se solubilise principalement dans la couronne micellaire et la couche de palissade. A cause de l'aspect compétitif entre le Phénol, le NaBr et les alcools résulte que à faibles molalités en solutés, le Phénol est contraint à quitter la micelle. Le butanol et l'acide favorisent la solubilisation du Phénol dans le coeur de la micelle.
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Antivirulent and antibiofilm salicylidene acylhydrazide complexes in solution and at interfacesHakobyan, Shoghik January 2015 (has links)
The growing bacterial resistance against antibiotics creates a limitation for using traditional antibiotics and requests development of new approaches for treatment of bacterial infections. Among the bacterial infections that are most difficult to treat, biofilm-associated infections are one of the most hazardous. Consequently, the prevention of biofilm formation is a very important issue. One of the techniques that are widely investigated nowadays for this purpose is surface modification by polymer brushes that allows generating antifouling antibacterial surfaces. Previously, it was reported that salicylidene acylhydrazides (hydrazones) are good candidates as antivirulence drugs targeting the type three secretion system (T3SS). This secretion system is used by several Gramnegative pathogens, including Pseudomonas aeruginosa, to deliver toxins into a host cell. Furthermore, the chemical structure of these substances allows formation of complexes with metal ions, such as Fe3+ and Ga3+. The antibacterial activity of Ga3+ is well known and attributed to its similarity to the Fe3+ ion. It has also been shown that Ga3+ ions are able to suppress biofilm formation and growth in bacteria. In this thesis the chemistry of antibacterial and antivirulence Ga3+-Hydrazone complexes in solution was studied. First, to get insights in the solution chemistry, the protonation and the stability constants as well as the speciation of the Ga3+-Hydrazone complexes were determined. Additionally, a procedure for anchoring one of the hydrazone substances to antifouling polymer brushes was optimized, and the resulting surfaces were characterized. Results showed that the complexation with Ga3+ ions stabilizes the ligand and increases its solubility. Ga3+ ion binds to the hydrazone molecule forming a strong chelate that should be stable at physiological conditions. The different biological assays, such as Ga3+ uptake, antivirulence and antibiofilm effects, indicated very complex interaction of these complexes with the bacterial cell. Negatively charged and zwitterionic surfaces strongly reduced protein adsorption as well as biofilm formation. Therefore, the antifouling zwitterionic poly-[2-(methacryloyloxy)ethyl]dimethyl-3- sulfopropyl)-ammonium hydroxide (pMEDSAH) brushes were post-modified and successfully functionalized with bioactive substances via a block-copolymerization strategy. However, in order to maintain the availability of the bioactive substance after functionalization, the hydrophobic polyglycidylmethacrylate (pGMA) top block is probably better to functionalize with a lipophilic molecules to reduce diblock copolymer brush rearrangement.
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Photochemical and Photophysical Studies of Synthetic Derivatives of the Green Fluorescent Protein ChromophoreDong, Jian 07 July 2008 (has links)
We have synthesized dimethyl derivatives of the GFP chromophore (p-HOBDI) and several of its derivatives, and their photochemistry and photophysics were investigated using various steady-state and time-resolved techniques as follows.
We first consider the effect of the £]-barrel on the optical properties of the GFP chromophore (p-HOBDI) experimentally by selective variation of the protonation state of chromophores and different solvents. Each of these forms shows a complex solvatochromic behavior and is governed by both polar and acid/base properties of the solvents. In contrast to their solution behavior, some O-alkyl GFP chromophore (alkoxy-BDI) derivatives exhibit large fluorescent enhancement in the solid state. The color of the crystalline BDI is tuned by substituent-mediated crystal packing, showing the potential applications in optoelectronic devices.
Using femtosecond polarization-sensitive infrared (IR) spectrosceopy of the C=O stretching mode of the HOBDI, we have then discovered a near complete twisting around the ethylenic bridge between the phenolate and imidazolidinone groups upon electronic excitation. Cis/trans isomerization induced by the rotation around the bridge is thought to be responsible for the behavior of blinking in fluorescent protein; however, the mechanism of the thermal reverse isomerization is more problematic. Thus we synthesized BDI derivatives with decreasing para-donating ability, HO, CH3O, CH3, H, and Cl, and used a Hammett plot for the rate study. With a positive â value, we conceived, for the first time, a novel nucleophilic addition/elimination mechanism.
Finally, the GFP chromophore falls into the general category of hydroxyarene photoacids, which exhibit high excited-state acidities but neutral ground states. A hydroxyl substituent at the meta position shows enhanced charge transfer and greater acidity in the excited state. As a result, we have demonstrated that the fast quenching of the excited state by internal conversion to the ground state is much slower in meta- than in para-HOBDI derivatives. This allows studies of this ultrafast intermolecular ESPT that competes with isomerization. The photoinduced dynamics of the meta isomer of GFP chromophore was further investigated using femtosecond transient absorption and fluorescence upconversion spectroscopies.
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O estudo da enzima deidroquinato sintase de Mycobacterium tuberculosis H37Rv como alvo para o desenvolvimento de fármacos antituberculoseMendonça, Jordana Dutra de January 2010 (has links)
Apesar da incidência per capita da tuberculose (TB) ter se mantido estável em 2005, o número de novos casos que surgem a cada ano continua a aumentar no mundo todo. De acordo com a Organização Mundial de Saúde, foram estimados 9,4 milhões de novos casos de TB em 2008, dos quais 1,4 milhões eram HIV - positivos, e com 1,8 milhões de mortes - o equivalente a 4.500 mortes por dia. Fatores como migração, privação sócio-econômica, co-infecção TB-HIV e o aparecimento de cepas resistentes contribuíram para o aumento do número de casos de TB no mundo, principalmente nos países onde a TB já foi considerada erradicada, e criaram a necessidade do desenvolvimento de novas terapêuticas. Alvos moleculares específicos, que são essenciais para o patógeno, e ausentes no hospedeiro, como as enzimas da via do ácido chiquímico são alvos atraentes para o desenvolvimento de novas drogas antituberculose. Essa via leva à síntese de compostos aromáticos, como aminoácidos aromáticos, e é encontrada em plantas, fungos, bactérias e parasitas do phylum Apicomplexa, mas está ausente em humanos. No ano de 2000, foi comprovada a essencialidade dessa via para a viabilidade do bacilo, tornando todas essas enzimas alvos validados para estudo. A segunda enzima da via, deidroquinato sintase (DHQS), catalisa a conversão de 3-deoxi-D-arabino heptulosonato-7-fosfato em 3-deidroquinato, o primeiro composto cíclico. Neste trabalho, são descritos o requerimento de metais divalentes na reação e a determinação do mecanismo cinético da DHQS. Os parâmetros cinéticos verdadeiros foram determinados e, juntamente com os experimentos de ligação, o mecanismo rápido-equilíbrio aleatório foi proposto. O tratamento com EDTA aboliu completamente a atividade de DHQS, sendo que a adição de Co+2 e Zn+2 levam a recuperação total e parcial da atividade enzimática, respectivamente. O excesso de Zn+2 inibe a atividade DHQS, e os dados de ITC indicaram a presença de dois sítios seqüenciais de ligação, o que é consistente com a existência de um sítio secundário inibitório. O protocolo de cristalização foi estabelecido e experimentos em andamento proporcionarão a elucidação da estrutura tridimensional da DHQS, que irá beneficiar tanto o desenho de novos inibidores como uma análise detalhada dos rearranjos do domínio da proteína. Em conjunto, estes resultados representam um passo essencial para o desenho racional de inibidores específicos que podem fornecer uma alternativa promissora para um novo, eficaz, e mais curto de tratamento para TB. / Although the estimated per capita tuberculosis (TB) incidence was stable in 2005, the number of new cases arising each year is still increasing globally. According with World Health Organization, there were estimated 9.4 million new TB cases in 2008, from which 1.4 million were HIV-positive, with 1.8 million deaths total – equal to 4500 deaths a day. Migration, socio-economic deprivation, HIV co-infection and the emergence of extensively-resistance strains, have all contributed to the increasing number of TB cases worldwide, mainly in countries where it was once considered eradicated, and have created an urgent need for the development of new therapeutics against TB. Specific molecular targets, that are essential to the pathogen, and absent in the host, like the enzymes of the shikimate pathway, are attractive targets to development of new antitubercular drugs. This pathway leads to the biosynthesis of aromatic compounds, including aromatic amino acids and it is found in plant, fungi, bacteria and Apicomplexa parasites, but is absent in humans. In 2000, this pathway was proved to be essential to the viability of the pathogen, which validates all its enzymes as potential targets. The second enzyme of this pathway, dehydroquinate synthase (DHQS), catalyzes the conversion of 3-deoxy-D-arabinoheptulosonate 7-phosphate in 3-dehydroquinate, the first cyclic compound. In this work, we described the metal requirement and kinetic mechanism determination of the dehydroquinate synthase. The determination of the true kinetic parameters was performed, and, in addition to ligand binding experiments, the rapid-equilibrium random mechanism was determined. The treatment with EDTA abolished completely the activity of DHQS, and the addition of Co+2 and Zn+2 leads to full and partial recovery of enzyme activity, respectively. Excess of Zn+2 inhibits the DHQS activity, and the ITC data revealed two sequential binding sites, which is consistent with the existence of a secondary inhibitory site. The crystallization protocol was established and ongoing experiments will provide the three-dimensional structure of mtDHQS, which will benefit both the design of novel inhibitors as well as detailed analysis of domain rearrangements of protein. Taken together, these results represent an essential step for the rational design of specific inhibitors that can provide a promising alternative to a new, effective, and shorter treatment for TB.
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