Kyoto University (京都大学) / 0048 / 新制・課程博士 / 博士(工学) / 甲第16874号 / 工博第3595号 / 新制||工||1543(附属図書館) / 29549 / 京都大学大学院工学研究科分子工学専攻 / (主査)教授 田中 一義, 教授 佐藤 啓文, 教授 梶 弘典 / 学位規則第4条第1項該当

The Born-Oppenheimer approximation is a mainstay in molecular physics and chemistry and can be considered a two step process. The first step is to solve the electronic problem with nuclei fixed in space while the second step is to then determine the nuclear dynamics on a given electronic potential energy surface. This first-step calculation of the wavefunction and electronic energies for fixed nuclei has been at the center of modern quantum chemistry for decades. While the majority of chemical processes can be investigated by considering these single electronic surface dynamics, there exist problems in which the dynamics are not constrained to a single electronic surface. One such problem that justifies going beyond the typical adiabatic approximation is the determination of energy levels in systems with strongly coupled electronic states. While some work has been done using diabatic or quasidiabatic Hamiltonians to describe such systems, the work has historically been of qualitative accuracy. Model Hamiltonians have been constructed using experimental data to help calibrate the model parameters aided by the use of lower level adiabatic calculations to help inform the model. It is only within the last few years that theorists have been able to attempt parameterization of such models using only ab initio methods. The goal of this work is to develop a computational framework for the parameterization of quantitatively accurate quasidiabatic Hamiltonians based purely on ab initio information and apply it to a notoriously difficult problem that has plagued the theoretical community for decades -- high accuracy treatment of the energy levels of the NO₃ radical. In this dissertation, high-level ab initio calculations that employ the equation-of-motion coupled-cluster method in the single, doubles and triples (EOMIP-CCSDT) have been used in conjunction with a quasidiabatic ab initio approximation to construct a vibronic Hamiltonian for the strongly coupled X²A'₂ and B²E' states of the NO₃ radical. A quartic vibronic coupling model potential of the form advocated by Köppel et al. has been used to determine the energy levels of this system to quantitative accuracy when compared to experimental data. In order to obtain sufficiently accurate potential energy surfaces necessary to parameterize a quantitatively accurate model Hamiltonian, thousands of large calculations had to be run that do not fit in memory on even the largest HPC systems. The resulting large, out-of-core solves do not map to traditional systems in a way to enable any reasonable parallelization. As a result, a new MPI-based utility has been developed to support out-of-core methods on distributed memory systems. This and other advances in scientific computing form the basis of the developed computational framework. / text

Understanding the properties of electronically interacting molecular chromophores, which involve internally coupled electronic-vibrational motions, is important to the spectroscopy of many biological systems. Here we apply linear absorption, circular dichroism, and two-dimensional fluorescence spectroscopy to study the local structure and excited state dynamics of excitonically coupled cyanine dimers that are rigidly positioned within the sugar-phosphate backbones of the DNA. Dimer probes were positioned within the double-stranded DNA duplex and at the single-strand/double-stranded DNA junction to examine the positional dependence of the structural variation and fluctuations. We interpret spectroscopic measurements in terms of the Holstein vibronic dimer model, from which we obtain information about the local conformation of the dimer probe locally within their respective DNA environments. We show that the exciton-coupling strength of the dimer-DNA construct can be systematically varied with temperature below the double-stranded – single-strand DNA denaturation transition. Using time-resolve 2DFS measurements we observed long lived vibronic coherences in the system. The properties of the cyanine DNA construct we determine suggest that it may be employed as a useful model system to test fundamental concepts of protein DNA interactions and the role of electronic-vibrational coherence in electronic energy migration within exciton-coupled biomolecular arrays. This dissertation contains previously published and unpublished co-authored material.

京都大学 / 0048 / 新制・課程博士 / 博士(工学) / 甲第18288号 / 工博第3880号 / 新制||工||1595(附属図書館) / 31146 / 京都大学大学院工学研究科分子工学専攻 / (主査)教授 田中 一義, 教授 田中 庸裕, 教授 佐藤 啓文 / 学位規則第4条第1項該当 / Doctor of Philosophy (Engineering) / Kyoto University / DGAM

京都大学 / 0048 / 新制・課程博士 / 博士(工学) / 甲第19741号 / 工博第4196号 / 新制||工||1647(附属図書館) / 32777 / 京都大学大学院工学研究科分子工学専攻 / (主査)教授 田中 庸裕, 教授 佐藤 啓文, 教授 梶 弘典 / 学位規則第4条第1項該当 / Doctor of Philosophy (Engineering) / Kyoto University / DGAM

京都大学 / 新制・課程博士 / 博士(工学) / 甲第25014号 / 工博第5191号 / 新制||工||1991(附属図書館) / 京都大学大学院工学研究科分子工学専攻 / (主査)教授 佐藤 徹, 教授 田中 庸裕, 教授 佐藤 啓文 / 学位規則第4条第1項該当 / Doctor of Philosophy (Engineering) / Kyoto University / DGAM

A theoretical model describing photophysics of π-conjugated aggregates, such as molecular crystals and polymer thin films, is developed. A Holstein-like Hamiltonian expressed with a multi-particle basis set is used to evaluate absorption and photoluminescence (PL) spectra. An analysis with line strength ratio proves to be a powerful diagnostic tool to obtain additional spectral signatures with which to distinguish H- vs. J-aggregation. For the H-aggregates absorption peak ratio, A0-0/A0-1, diminishes as the excitonic coupling increases. Also the PL peak ratio, I0-0/I0-1, is zero at T=0K with no disorder and the value increases as temperature and disorder increase. By contrast the J-aggregates show the opposite trends. Furthermore we will show the PL peak ratio provides a direct measurement of the exciton coherence length for a linear J-aggregate and could be expressed as I0-0/I0-1 = Ncoh/l2. We will also show that it is inversely proportional to square root of temperature (T-1/2). Applying our theory to the herringbone style oligoacene molecular crystals, we show the lowest singlet exciton states are highly influenced by charge transfer (CT) states and the well known energetic gap in two polarized absorption spectra, so called Davydov Splitting (DS), is a product of the interaction. We have successfully reproduced the DS for all three oligoacenes without any free parameters. Inspired by the CT contribution in oligoacene crystals, we further develop Wannier-Mott exciton model and apply to disorder-free polydiacetylene (PDA) quantum wires, which have been shown to be extremely emissive. We will show the quantum wire is a J-aggregate and we once again derive the peak ratio and the coherence size relation, I0-0/I0-1 = kNcoh/l2, where k is a prefactor close to unity. Typical photophysical properties of polymer p-stacks such as those occurring in P3HT films are well explained by the simple linear H-aggregate model. However several groups have started seeing more J-like behaviors amongst “improved” (less disordered) polymer films such as increased values of A0-0/A0-1 and I0-0/I0-1 and higher radiative rates. With the new perception of a single polymer chain being a J-aggregate, we apply our new theory to p-stack of polymer chains. We call this HJ-aggregate model since the interchain interaction induces H-aggregation. In the study we show a competition between intrachain and interchain interactions that leads to unique photophysical features. The new model is capable of explaining a wide range of polymer systems and most importantly the theory uncovers the mechanism of the improved polymer films; reducing disorder urges increasing intrachain reactions within each chain, thus enhancing more J-like spectral features. / Chemistry

We studied the effects of underdamped vibrational modes on excitonic energy transfer in small molecular aggregates by means of ultrafast nonlinear spectroscopy. We developed a vibronic dynamical model to account for the interplay of electronic and vibrational coherence during excitation transport. Our model was aimed to simulate signals of a broad class of linear and third order spectroscopies (absorption, fluorescence, transient absorption (TA), transient grating (TG), two-dimensional spectroscopy (2D)) in the visible domain andaccounts for anharmonic vibrations, sub-exponential relaxation and nonlinear electron-vibrational coupling. We subsequently applied the model for several case studies, such as carotenoid to bacteriochlorophyll excitation transfer in light-harvesting 2 complex (LH2) of purple bacteria, excitation transfer in perylene dyads or vibrational dynamics in hypericin. We have paid particular attention for detailed interpretation of lineshapes of 2D spectrograms employing, e.g. phase analysis and center line (CL) slopes with emphasis to study interplay of electronic, vibrational modulations, or finite excitation pulse durations.

Cette thèse concerne l'ouverture de cycle des spiropyranes (SP) et leur utilisation comme interrupteurs contrôlés par impulsions laser. Nous avons élaboré un modèle théorique pour étudier cette réaction photochimique et développer des stratégies de contrôle.Les SP présentent des effets non adiabatiques impliquant un traitement quantique pour les électrons et les noyaux. L'approche multiconfigurationnelle dépendante du temps (MCTDH) est idéale car elle peut traiter des dynamiques quantiques impliquant plusieurs états électroniques. MCTDH a été appliqué avec succès aux calculs de spectres électroniques de systèmes montrant de forts effets non adiabatiques. Cependant, cette approche requiert au préalable les surfaces d'énergie potentielle (PES). Ces applications sont basées sur un modèle de couplage vibronique local de la PES à proximité du point de Franck-Condon (FC). Contrairement aux calculs de spectres de photoabsorbtion impliquant souvent de courtes échelles de temps et de faibles déformations autour du point de FC, la simulation de réactions photochimiques requiert une représentation adéquate des mouvements de large amplitude. Ce modèle doit donc être rendu plus flexible. Les modes normaux, utilisés dans le modèle standard, n'étant pas adaptés aux grandes déformations, nous avons choisi d'utiliser la méthode MCTDH en coordonnées curvilignes avec une reformulation systématique du modèle en coordonnées polysphériques afin d'obtenir une énergie cinétique nucléaire séparable.Même si le processus n'implique que l'état fondamental et le premier état excité, leurs configurations électroniques dominantes peuvent changer fortement le long de mouvements de grande amplitude. Nous avons donc développé une approche générale basée sur une étude systématique de quelques données ab initio pour générer le meilleur jeu d'états diabatiques d'un problème donné.De premières applications au benzopyrane (chromophore des SP) ont montré un bon accord avec l'expérience. / The focus of this thesis is the ring opening of spiropyrans (SP), and how these molecules can be used as photoswitches controlled with laser pulses. We have built a theoretical model to study this photochemical reaction and develop strategies for control.SP exhibit nonadiabatic effects, and therefore, their modelling requires a quantum description for both the electrons and the nuclei. The multiconfiguration time-dependent Hartree (MCTDH) approach is ideal in this case because it can treat quantum dynamics involving several electronic states. MCTDH was successfully applied to electronic spectra calculations of systems showing strong nonadiabatic effects. However, the corresponding potential energy surfaces (PES) for this approach are required first. These applications are based on a local vibronic coupling model of the PES in the neighbourhood of the Franck-Condon (FC) point.As opposed to calculating photoabsorption spectra that often involves short timescales and small deformations around the FC geometry, simulating photochemical reactions requires an adequate representation of large-amplitude motions. Thus, this model must be made more flexible.Normal modes, usually used for the standard model, are not adapted to large-amplitude deformations. We thus chose to run MCTDH in curvilinear coordinates and recast systematically the model in terms of polyspherical coordinates to produce a separable form for the nuclear kinetic energy.Even if only the ground and the first excited electronic states are involved in the process, their dominant electronic configurations may change significantly along large-amplitude motions. We have developed a general approach based on a systematic analysis of a few ab initio data to generate the best set of diabatic states for a given problem.Preliminary results applied to benzopyran (the chromophore of the SP) showed good agreement with the experiments.

Diese Arbeit befasst sich mit der vibronischen Kopplung zweier angeregter Elektronenniveaus in Diphenylhexatrien (DPH) und mit der Rolle von Schwingungsmoden beim ultraschnellen photoinduzierten intramolekularen Elektronentransfer in Betain-30. Mit Hilfe von Pikosekunden-zeitaufgelöster Kohärenter Antistokes Ramanspektroskopie im angeregten Zustand des DPH haben wir zum ersten Mal das Auftreten zweier extrem frequenzverbreiterter Ramanlinien beobachtet, die gegenüber dem C=C Streckschwingungsbereich zu höheren Wellenzahlen verschoben sind. Beide Ramanlinien lassen sich mit Erhöhung der Lösungsmittelpolarisierbarkeit um mehr als 50 cm-1 in Richtung niedrigerer Frequenzen verschieben. Zur Erklärung des Sachverhalts werden zwei Modelle diskutiert: (i) die Existenz zweier Isomere im ersten angeregten Elektronenniveau des DPH und (ii) vibronische Kopplung der beiden Elektronenniveaus durch eine niederfrequente asymmetrische bu Schwingungsbewegung (pseudo-Jahn-Teller Effekt). Mit Hilfe von stationärer Ramanspektroskopie und insbesondere Messungen der Stokes- und anti-Stokes-Ramanspektren mit Pikosekunden-Zeitauflösung, die Beteiligung von Molekülschwingungen beim Elektronentransfer in Betain-30 wurde untersucht. Zum ersten Mal wurde eine modenspezifische Kinetik der Ramanaktiven Schwingungen nach Elektronen Rücktransfer in Betain-30 beobachtet. Die hochfrequenten Ramanaktiven Moden werden beim Elektronen Rücktransfer bevorzugt, was zu einer nicht-thermischen Besetzung der Schwingungen führt. Das ist zumindest qualitativ in Übereinstimmung mit Rechnungen die auf Fermi's Goldener Regel basieren. Eine Thermalisierung zwischen den beobachteten Ramanaktiven Moden stellt sich frühestens 10 ps nach Anregung ein. Die Thermalisierung in dem gesamten Molekül ist aber noch nicht beendet. / This thesis deals with vibronic coupling effects between two excited electronic singlet states in Diphenylhexatriene (DPH), and with the role of vibrational modes in photoinduced ultrafast electron transfer in Betaine-30. By using the picosecond time-resolved Coherent Antistokes Raman Spectroscopy method, it was possible to observe for the first time two very broad and unusual up-shifted vibrational frequencies in the excited singlet state of DPH, which have frequencies higher than frequency region of the C=C stretching mode. These two frequencies shift towards lower frequencies with increasing solvent polarizability. Two explanations have been discussed: (i) the simultaneous existence of two rotamers, where the two frequencies originate from "different molecules" and (ii) a model of vibronic coupling by an asymmetric low frequency bu-mode (pseudo-Jahn-Teller effect). By using the picosecond time-resolved anti-Stokes Raman spectroscopy method, we observed for the first time mode-specific excitation of vibrational modes after back-electron transfer in Betaine-30. In the primary event, high frequency Raman active modes are most effective in accepting energy, which leads to a non-thermal distribution of the relative populations of Raman active modes. This is qualitatively in accordance with predictions derived from Fermi's Golden Rule. Although energy transfer between the Raman active modes has been finished after about 10 to 15 ps, thermalization is not yet complete in the whole molecule.