Thesis (MSc)--University of Stellenbosch, 2004. / ENGLISH ABSTRACT: The polysaccharides that are present in wine originate from the grapes, the fungi that grow on the grapes and from other microorganisms that come into contact with the must during winemaking. The grape-derived polysaccharides of most concern in winemaking are pectin, glucan and xylan that can be enzymatically degraded by pectinases, glucanases and xylanases, respectively. These are the main structural polysaccharides of the cell wall of the grape cell. Degradation of the cell walls will result in the separation and rupture of the grape cells, and cell wall-bound compounds will be released into the must. Treating the must with pectinase and macerating enzyme preparations can result in an increase in free-flow juice, an improvement in must clarification and filtration, and an increased extraction of phenols and tannins. The tannins that are extracted polymerise with anthocyanins in red wine during ageing, resulting in increased colour intensity and stability. Wine aroma is also influenced by enzyme treatment. The degradation of the cell wall contributes to the release of glycosidically-bound terpene or alcohol precursors from the berries. The hydrolysis of these precursors during fermentation can result in an improvement in aroma. It can thus be seen that it is possible to improve wine quality and processing by supplementing the endogenous enzymes that are present in the fermentation with commercial enzyme preparations. Commercial enzymes are typically crude fungal preparations. The majority of commercial pectinase and glucanase preparations are derived from Aspergillus and Trichoderma, respectively. Since the endogenous polysaccharase activity of Saccharomyces cerevisiae is very limited, the heterologous expression of specific polysaccharase genes in an industrial yeast strain can improve the winemaking process, resulting in a higher quality wine without the addition of expensive commercial enzyme preparations. Since only the desired enzymes are secreted by the recombinant strain, there will be no undesired sideactivities, which can be detrimental to wine quality. Several pectinase-, glucanaseand xylanase-encoding genes, cloned from a variety of organisms, have been expressed successfully in laboratory strains of S. cerevisiae. Attempts have also been made to construct industrial wine yeast strains that express these polysaccharase genes and secrete the encoded enzymes. Fermentation with some of these strains resulted in a decrease in total phenolics and turbidity, an increase in juice extraction, and alterations in the colour and aromatic profile of the resulting wines. In this study, four polysaccharide-degrading, recombinant wine yeast strains were constructed. The endo-β-1,4-xylanase gene, XYN2, and the endo-β-1,4-glucanase gene, end1, were previously cloned from the soft rot fungus Trichoderma reesei and the rumen bacterium Butyrivibrio fibrisolvens, respectively. These genes were subcloned into different expression cassettes which were used to construct the four integration plasmids. The recombinant plasmids contained the following gene cassettes: TEF1P-XYN2-ADH2T (plasmid pDLG29) ADH1P- MFα1S -end1-TRP5T (plasmid pDLG30) ADH1P-MFα1S-end1-TRP5T and ADH2P-XYN2-ADH2T (plasmid pDLG33), ADH1P-MFα1S-end1-TRP5T and YG100PXYN2- ADH2T (plasmid pDLG39). These four plasmids were then separately integrated into the ILV2 locus of the commercial wine yeast strain S. cerevisiae VIN13. Wine was made with the four strains constructed in this study, a pectolytic strain, VIN13[pPPK], a glucanase- and xylanase-secreting strain, VIN13[pEX], an untransformed VIN13 strain, and an untransformed strain with the addition of the commercial enzyme preparation Rapidase EX Colour. Microvinification experiments were carried out on Pinot noir, Ruby Cabernet and Muscat d’Alexandria wines. Fermentation with the polysaccharide-degrading strains resulted in significant improvements in juice extraction, colour intensity and stability, and in alterations in the aromatic profiles of the wines produced. Subject to the approval by the regulatory authorities and eventual consumer acceptance of the use of genetically modified organisms (GMOs) in fermented foods and beverages, it might be required that the GM status of the yeast that is used appears on the label. Currently, there is no robust technique available with which the use of GM yeast can be revealed in a finished wine because the yeast cells and their DNA are removed from or denatured in the wine during filtration and processing. One way with which the undeclared use of a GM yeast in winemaking could be exposed would be to compare the chemical profile of a suspect wine with that of non-GM wine. In order to explore this concept further, a secondary aim of this study was to investigate whether Fourier Transformation Infra Red (FT-IR) spectroscopy coupled with multivariate data analysis could distinguish between wines fermented with transgenic and non-transgenic yeast strains, or between wines fermented with different transgenic strains. The results showed that this method could be used to classify wines fermented with different yeast strains if fermentation with the strain resulted in a unique chemical profile in the resulting wine. This was a preliminary study and these findings were summarised as an addendum to the thesis. / AFRIKAANSE OPSOMMING: Die polisakkariede wat in wyn teenwoordig is, is afkomstig van die druiwe, die swamme wat op die druiwe groei en vanaf ander mikroörganismes wat tydens die wynmaakproses met die mos in aanraking kom. Die belangrikste druifpolisakkariede in wynbereiding is pektien, glukaan en xilaan, wat onderskeidelik deur pektinases, glukanases en xilanases afgebreek kan word. Hierdie is die vernaamste strukturele polisakkariede van ‘n druifsel se selwand. Die afbreking van die selwande veroorsaak dat die druifselle skei en skeur, met die gevolg dat die selwandgebonde verbindings in die mos vrygelaat word. Die behandeling van die mos met pektinase en versappingsensiempreparate kan tot ʼn toename in vry-afloopsap lei, sowel as ʼn verbetering in mosverheldering en -filtrasie en ʼn verhoogde ekstraksie van fenole en tanniene. Die tanniene wat geëkstraheer word, polimeriseer in rooiwyn tydens veroudering, en dit lei tot verhoogde kleurintensiteit en -stabiliteit. Wynaroma word ook deur ensiembehandeling beïnvloed. Die afbreking van die druifselwand dra by tot die vrylating van glikosidiesgebonde terpeen- en alkoholvoorlopers uit die korrels. Die hidrolise van hierdie voorlopers tydens gisting kan lei tot ʼn verbetering van die aroma. Dit is dus duidelik dat dit moontlik is om wynkwaliteit en wynbereiding te verbeter deur die endogene ensieme wat in die gisting teenwoordig is met kommersiële ensiempreparate te supplementeer. Kommersiële ensiempreparate is tipies ongesuiwerde swampreparate. Die meerderheid kommersiële pektinase- en glukanasepreparate word onderskeidelik vanaf Aspergillus en Trichoderma verkry. Aangesien die endogene polisakkaraseaktiwiteit van Saccharomyces cerevisiae baie beperk is, kan die heteroloë uitdrukking van spesifieke polisakkarase-gene in ʼn industriële gisras die wynbereidingsproses verbeter en lei tot ʼn hoër kwaliteit wyn sonder die byvoeging van duur kommersiële ensiempreparate. Omdat die verkose ensieme deur die rekombinante ras uitgeskei word, sal daar geen ongewenste newe-effekte teenwoordig wees wat ʼn nadelige effek op wynkwaliteit kan hê nie. Verskeie mikrobiese gene wat vir pektinases, glukanases en xilanases kodeer, is reeds voorheen uit ‘n wye verskeidenheid van organismes gekloneer en suksesvol in laboratoriumrasse van S. cerevisiae uitgedruk. Pogings is ook aangewend om industriële wyngisrasse te konstrueer wat hierdie polisakkarasegene uitdruk en hul enkodeerde ensieme uitskei. Gisting met sommige van hierdie rekombinante gisrasse het gelei tot ʼn afname in totale fenoliese verbindings en troebelheid, ʼn verhoging in sapekstraksie, en veranderings in die kleur en aromatiese profiel van die gevolglike wyne. In hierdie studie is vier polisakkaried-afbrekende, rekombinante wyngisrasse gekonstrueer. Die endo-β-1,4-xilanasegeen, XYN2, en die endo-β-1,4- glukanasegeen, end1, is voorheen reeds onderskeidelik vanaf die sagte vrotswam, Trichoderma reesei, en die rumenbakterium, Butyrivibrio fibrisolvens, gekloneer. Hierdie gene is in vier integrasieplasmiede in verskillende ekspressiekassette gesubkloneer. Die plasmiede het die volgende geenkassette bevat: TEF1P-XYN2- ADH2T (plasmied pDLG29) ADH1P- MFα1S -end1-TRP5T (plasmied pDLG30) ADH1PMFα1S- end1-TRP5T and ADH2P-XYN2-ADH2T (plasmied pDLG33), ADH1P-MFα1S end1-TRP5T and YG100P-XYN2-ADH2T (plasmied pDLG39). Hierdie vier plasmiede is toe afsonderlik in die ILV2-lokus van die kommersiële wyngisras, S. cerevisiae VIN 13, geïntegreer. Wyn is met hierdie vier gekonstrueerde gisrasse gemaak, die pektolitiese gisras, VIN13[pPPK], die glukanase- en xilanase-afskeidende gisras, VIN13[pEX], die ongetransformeerde VIN13-ras, en met ʼn ongetransformeerde VIN13 gis waarby die kommersiële ensiempreparaat, Rapidase EX Colour, bygevoeg is. Mikro-wynbereidingseksperimente is op Pinot noir-, Ruby Cabernet- en Muscat D’Alexandria wyne uitgevoer. Gisting met die polisakkaried-afbrekende gisrasse het gelei tot ʼn noemenswaardige verbetering in sapekstraksie, kleurintensiteit en kleurstabiliteit, asook in veranderinge in die aromatiese profiele van die geproduseerde wyne. Indien die gebruik van geneties gemodifiseerde organismes (GMOs) in gefermenteerde voedsel en drank deur die reguleringsowerhede goedgekeur en uiteindelik deur die verbruiker aanvaar sou word, sou dit vereis kon word dat die GMstatus van die wyngisgis op die etiket van die wynbottel aangebring word. Verpligte etikettering van GM-wyn sal metodes vereis waarmee die ‘nalentskap’ van GMgisselle in die finale produk geïdentifiseer en gemoniteer kan word. Tans is daar geen robuuste tegnieke beskikbaar waarmee die gebruik van GM-giste openbaar kan word nie, aangesien die gisselle en hul DNA tydens filtrasie en prosessering verwyder word. Een wyse waarop die onverklaarde gebruik van ‘n GM-gis in wynbereiding blootgestel sou kno word, is om die chemiese profiel van die verdagte wyn met dié van ‘n nie-GM-wyn te vergelyk. Ten einde hierdie konsep verder te ondersoek was ‘n sekondêre doelwit van hierdie studie om te bepaal of FT-IR (Fourier-transformasie-infrarooi) spektroskopie tesame met meervariante dataanalise gebruik kan word om te onderskei tussen wyne wat met transgeniese en nietransgeniese gisrasse gegis is, of tussen wyne wat met verskillende transgeniese rasse gegis is. Die resultate het aangedui dat hierdie metode gebruik kan word om wyne wat met verskillende gisrasse gegis is, te klassifiseer indien die betrokke gisras ʼn unieke chemiese profiel in die uiteindelike wyn veroorsaak het. Dit was egter ʼn voorlopige ondersoek en is as ʼn byvoegsel tot die tesis geskryf.

Thesis (M.Sc. (Microbiology)) -- University of Limpopo, 2018 / Beer is one of the most widely consumed alcoholic beverages in the world. The brewing process is based on natural enzymatic activities that take place during the malting of barley grain, mashing of grist and fermentation of wort. Insufficient malt enzyme activity during the mashing process leads to high levels of barley β-glucan, arabinoxylan (AX) and dextrins in the wort as well as in the final beer. It was reported that high levels of β-glucan and AX increase wort and beer viscosity which lower the rate of beer filtration and this negatively affect the production rate in the brewery. During beer fermentation, brewing yeast catalyses the conversion of wort sugars to ethanol, carbon dioxide and other metabolic products. However, non-fermentable carbohydrates i.e., limit dextrins remain in the wort and final beer. These non-fermentable carbohydrates are known to contribute to the caloric value of beer which might lead to weight gain in consumers. The objectives of this study were to evaluate the effect of recombinant yeast strains expressing an endo-β-1,4-glucanase or an endo-β-1,4-xylanase on beer viscosity (as an indicator of filterability) and an α-amylase on residual sugars levels. The effect of the above mentioned enzymes on the aroma, appearance, flavour, mouth-feel and overall quality of the beer was also determined. Wort was produced in the University of Limpopo micro-brewery and the wort was pitched with different recombinant strains. The wild-type strain served as control. The results obtained showed that the xylanase expressing strain produced a measurable decrease in viscosity over the course of the fermentation, but endo-glucanase did not have any effect on the beer viscosity. The α-amylase producing strain, did not show a measurable reduction of residual sugars in the final beer probably as a result of very low activity on α-1,6 glycosidic bonds in dextrins during fermentation. The xylanase and α-amylase producing strain fermented effectively with good attenuation (decrease in wort specific gravity). The beer produced by the α-amylase and control strains were preferred in terms of taste and had similar qualities. The secreted amylolytic activity was not sufficient to significantly reduce residual sugar in the final beer. Although the xylanase secreting strain produced a beer with lower viscosity, the enzyme had a negative impact on the taste of the beer. Key words: Brewer’s yeast, beer fermentation, low calorie beer, amylase, xylanase, endo-glucanase.

The major aims of this thesis were to investigate the influence of i) antisense gene location relative to the target gene locus (?????location effect?????), ii) double-stranded RNA (dsRNA) formation, and iii) over-expression of host-encoded proteins on antisense RNA-mediated gene regulation. To test the location effect hypothesis, strains were generated which contained the target lacZ gene at a fixed location and the antisense lacZ gene at various genomic locations including all arms of the three fission yeast chomosomes and in close proximity to the target gene locus. A long inverse-PCR protocol was developed to rapidly identify the precise site of antisense gene integration in the fission yeast transformants. No significant difference in lacZ suppression was observed when the antisense gene was integrated in close proximity to the target gene locus, compared with other genomic locations, indicating that target and antisense gene co-localisation is not a critical factor for efficient antisense RNA-mediated gene suppression in vivo. Instead, increased lacZ down-regulation correlated with an increase in the steady-state level of antisense RNA, which was dependent on genomic position effects and transgene copy number. In contrast, convergent transcription of an overlapping antisense lacZ gene was found to be very effective at inhibiting lacZ gene expression. DsRNA was also found to be a central component of antisense RNA-mediated gene silencing in fission yeast. It was shown that gene suppression could be enhanced by increasing the intracellular concentration of non-coding lacZ RNA, while expression of a lacZ panhandle RNA also inhibited beta-galactosidase activity. In addition, over-expression of the ATP-dependent RNA-helicase, ded1, was found to specifically enhance antisense RNA-mediated gene silencing. Through a unique overexpression screen, four novel factors were identified which specifically enhanced antisense RNA-mediated gene silencing by up to an additional 50%. The products of these antisense enhancing sequences (aes factors), all have natural associations with nucleic acids which is consistent with other proteins which have previously been identified to be involved in posttranscriptional gene silencing.

Eight phylloplane yeasts were isolated from backyard apple trees in Corvallis, OR. Yeast isolates were classified to genus or species level. All isolates were tested in vitro for antagonistic activity against the postharvest pathogens Botrytis cinerea and Penicillium expansum. Of these isolates, Aureobasidium pullulans, Sporobolomyces roseus Rhodotorula sp., consistently reduced mycelial growth of B. cinerea and P. expansum in nutrient yeast dextrose agar (pH 4.5 or 7.0) incubated for 8 or 30 days at 24 or 1 C, respectively. These three yeasts also were evaluated for their ability to suppress spore germination of B. cinerea and P. expansum in a gradient of apple juice concentrations and to suppress development of gray and blue mold lesions in inoculated fruits of Golden Delicious apple. Germination of B. cinerea and P. expansum was reduced significantly (P���0.05) when incubated with the yeast isolates in 100 or 50% apple juice, but not in 0, 1 or 10% apple juice. S. roseus and A. pullulans reduced significantly (P���0.05) the size of gray mold lesions in wounded fruit stored at 5 C and 24 C by 63 to 72 and 81 to 90%, respectively, when compared to the nontreated control. Size of blue mold lesions in fruit stored at 5 and 24 C also were reduced significantly (P���0.05) by 66 to 38 and 74 to 63%, respectively, when pre-treated with S. roseus and A. pullulans. In general, fruit rot suppression by some yeasts isolated in this study was similar in magnitude to suppression obtained by Cryptococcus laurentii isolate 87-108, a yeast with commercial potential to suppress postharvest rots of pome fruits. Pretreatment of apple wounds with washed cells of A. pullulans, S. roseus, Rhodotorula sp., resulted in disease suppression, but treatment of wounds with cell-free culture supernatant of these isolates did not affect lesion development. Population size of A. pullulans, S. roseus, and C. laurentii increased in apple wounds incubated at 5 or 24 C for up to 25 days, indicating that they colonized the wound site. Data collected in this study support the hypothesis that yeast isolates antagonize fruit pathogens by competing for nutrients in wounds on fruit surfaces. The isolates of A. pullulans and S. roseus show promise for commercial development. / Graduation date: 1997

The major aims of this thesis were to investigate the influence of i) antisense gene location relative to the target gene locus (?????location effect?????), ii) double-stranded RNA (dsRNA) formation, and iii) over-expression of host-encoded proteins on antisense RNA-mediated gene regulation. To test the location effect hypothesis, strains were generated which contained the target lacZ gene at a fixed location and the antisense lacZ gene at various genomic locations including all arms of the three fission yeast chomosomes and in close proximity to the target gene locus. A long inverse-PCR protocol was developed to rapidly identify the precise site of antisense gene integration in the fission yeast transformants. No significant difference in lacZ suppression was observed when the antisense gene was integrated in close proximity to the target gene locus, compared with other genomic locations, indicating that target and antisense gene co-localisation is not a critical factor for efficient antisense RNA-mediated gene suppression in vivo. Instead, increased lacZ down-regulation correlated with an increase in the steady-state level of antisense RNA, which was dependent on genomic position effects and transgene copy number. In contrast, convergent transcription of an overlapping antisense lacZ gene was found to be very effective at inhibiting lacZ gene expression. DsRNA was also found to be a central component of antisense RNA-mediated gene silencing in fission yeast. It was shown that gene suppression could be enhanced by increasing the intracellular concentration of non-coding lacZ RNA, while expression of a lacZ panhandle RNA also inhibited beta-galactosidase activity. In addition, over-expression of the ATP-dependent RNA-helicase, ded1, was found to specifically enhance antisense RNA-mediated gene silencing. Through a unique overexpression screen, four novel factors were identified which specifically enhanced antisense RNA-mediated gene silencing by up to an additional 50%. The products of these antisense enhancing sequences (aes factors), all have natural associations with nucleic acids which is consistent with other proteins which have previously been identified to be involved in posttranscriptional gene silencing.

O trabalho consiste no sistema de produção de trigo e na evolução de danos causados pela giberela. O estudo considera a inexistência de cultivares resistentes à doença, a baixa eficiência do controle químico e a presença de micotoxinas em grãos. O trabalho teve como objetivos confirmar a eficiência dos fungicidas protioconazol e metconazol; comprovar a eficiência da deposição de barra com bicos com jatos direcionados as laterais da espiga resultando na completa cobertura das anteras presas; comprovar a viabilidade de uso de um sistema de aviso (aplicação após o início da floração antes da ocorrência de chuvas previstas para as futuras 24-48 horas e tentar melhorar a eficiência no controle da giberela. O experimento foi instalado no campo experimental da Universidade Tecnológica Federal do Paraná no município de Pato Branco, Paraná, conduzido em duas épocas, sendo a primeira estabelecida no dia 6 de maio de 2014 e a segunda em 21 de maio de 2014. Foi utilizada a cultivar Ametista de domínio da OR Melhoramento de sementes, Passo Fundo, Rio Grande do Sul. Os tratamentos constaram de uma testemunha sem aplicação de fungicida e de uma e duas aplicações de protioconazol 17,5% + trifloxistrobina (Fox) 500 mL/ha; metconazol 8,0% + piraclostrobina 13% (Opera Ultra) 750 mL/há, a aplicação dos fungicidas foi feita antes da ocorrência de chuva prevista, com ocorrência de sete dias de chuva e um volume total de 85,2mm na primeira época, e de 16 dias de chuva e um acúmulo de 400 mm na segunda época, Na avaliação, segunda época, o metconazol + piraclostrobina com duas aplicação, estatisticamente foi o tratamento que apresentou menor incidência em espigas reduzindo de 100 para 63,3%; o metconazol + piraclostrobina teve melhor desempenho também na redução da incidência em espiguetas, de 80,3% para 34,7%; o controle em espigas teve melhor resultado na segunda época com duas aplicações de metconazol + piraclostrobina; em espiguetas, na primeira época, o metconazol + piraclostrobina com duas aplicação resultou no melhor controle com 67%; O metconazol + piraclostrobina com duas aplicações teve um aumento no rendimento de grãos de 547 kg/há. O peso hectolitro não apresentou diferença significativa com mesmo numero de aplicações, somente quanto ao numero de aplicações em ambas as épocas sendo que metconazol + piraclostrobina com duas aplicações em ambas as época variou de 81 e 79. Conclui-se que a eficiência do ensaio pode ser confirmada quando a direção da calda direcionada com jatos com ângulo de 30º para frente e 70º para trás, lançados pelas pontas acopladas em corpos de bico duplo leque perpendicular ao alvo na posição vertical atinge as laterais da espiga. E O metconazol + piraclostrobina se mostrou o fungicida mais eficiente em relação ao protioconazol + trifloxistrobina no controle da giberela e o rendimento de grãos na safra de 2014. / The work consists in wheat production system and the evolution of damage caused by wheat scab. The study considers the lack of resistant cultivars to the disease, the low efficiency of chemical control and the presence of mycotoxins in grains. The study aimed to confirm the effectiveness of fungicides prothioconazole and metconazole; prove the bar deposition efficiency with nozzles directed jets the side of the ear resulting in full coverage of trapped anthers; prove the viability of using a warning system (application after the start of flowering before the onset of rains provided for future 24-48 hours and try to improve the efficiency in controlling scab. The experiment was conducted in the experimental field of Technological University Federal do Paraná in the city of Pato Branco, Paraná, conducted in two seasons, the first established on May 6, 2014 and the second on 21 May 2014. It was used to cultivate Amethyst field of OR Improvement seeds, . Passo Fundo, Rio Grande do Sul Treatments consisted of a control without fungicide application and one and two applications of prothioconazole + 17.5% trifloxystrobin (Fox) 500 ml / ha; metconazole 8.0% + pyraclostrobin 13% ( Opera Ultra) 750 mL / ha In the evaluation, second season, metconazole + pyraclostrobin with two application statistically was the treatment that showed a lower incidence in spikes reducing from 100 to 63.3%;. metconazole + pyraclostrobin performed better also in reducing the incidence of spikelets, 80.3% to 34.7%; the control ears had better results in the second season with two applications of metconazole + pyraclostrobin; in spikelets, in his first season, metconazole + pyraclostrobin with two application resulted in better control with 67%; with two applications of metconazole + pyraclostrobin gave the highest yield even under climatic conditions favorable to disease; metconazole + pyraclostrobin in both seasons showed superior efficiency in controlling FHB giving greater weight gain; with two application of both fungicides, the hectoliter weight was 81 and 79, respectively, each fungicide; the application of fungicides was made in advance of expected rain, occurring seven days of rain and a total volume of 85,2mm the first time, and 16 days of rain and an accumulation of 400 mm in the second period; the test efficiency can be confirmed when the direction of the spray jets launched wings coupled in double nozzle bodies perpendicular to the target upright reaches the sides of the spike. The metconazole + pyraclostrobin proved the most effective fungicide against the prothioconazole + trifloxystrobin in wheat scab control in the 2014 harvest.

O trabalho consiste no sistema de produção de trigo e na evolução de danos causados pela giberela. O estudo considera a inexistência de cultivares resistentes à doença, a baixa eficiência do controle químico e a presença de micotoxinas em grãos. O trabalho teve como objetivos confirmar a eficiência dos fungicidas protioconazol e metconazol; comprovar a eficiência da deposição de barra com bicos com jatos direcionados as laterais da espiga resultando na completa cobertura das anteras presas; comprovar a viabilidade de uso de um sistema de aviso (aplicação após o início da floração antes da ocorrência de chuvas previstas para as futuras 24-48 horas e tentar melhorar a eficiência no controle da giberela. O experimento foi instalado no campo experimental da Universidade Tecnológica Federal do Paraná no município de Pato Branco, Paraná, conduzido em duas épocas, sendo a primeira estabelecida no dia 6 de maio de 2014 e a segunda em 21 de maio de 2014. Foi utilizada a cultivar Ametista de domínio da OR Melhoramento de sementes, Passo Fundo, Rio Grande do Sul. Os tratamentos constaram de uma testemunha sem aplicação de fungicida e de uma e duas aplicações de protioconazol 17,5% + trifloxistrobina (Fox) 500 mL/ha; metconazol 8,0% + piraclostrobina 13% (Opera Ultra) 750 mL/há, a aplicação dos fungicidas foi feita antes da ocorrência de chuva prevista, com ocorrência de sete dias de chuva e um volume total de 85,2mm na primeira época, e de 16 dias de chuva e um acúmulo de 400 mm na segunda época, Na avaliação, segunda época, o metconazol + piraclostrobina com duas aplicação, estatisticamente foi o tratamento que apresentou menor incidência em espigas reduzindo de 100 para 63,3%; o metconazol + piraclostrobina teve melhor desempenho também na redução da incidência em espiguetas, de 80,3% para 34,7%; o controle em espigas teve melhor resultado na segunda época com duas aplicações de metconazol + piraclostrobina; em espiguetas, na primeira época, o metconazol + piraclostrobina com duas aplicação resultou no melhor controle com 67%; O metconazol + piraclostrobina com duas aplicações teve um aumento no rendimento de grãos de 547 kg/há. O peso hectolitro não apresentou diferença significativa com mesmo numero de aplicações, somente quanto ao numero de aplicações em ambas as épocas sendo que metconazol + piraclostrobina com duas aplicações em ambas as época variou de 81 e 79. Conclui-se que a eficiência do ensaio pode ser confirmada quando a direção da calda direcionada com jatos com ângulo de 30º para frente e 70º para trás, lançados pelas pontas acopladas em corpos de bico duplo leque perpendicular ao alvo na posição vertical atinge as laterais da espiga. E O metconazol + piraclostrobina se mostrou o fungicida mais eficiente em relação ao protioconazol + trifloxistrobina no controle da giberela e o rendimento de grãos na safra de 2014. / The work consists in wheat production system and the evolution of damage caused by wheat scab. The study considers the lack of resistant cultivars to the disease, the low efficiency of chemical control and the presence of mycotoxins in grains. The study aimed to confirm the effectiveness of fungicides prothioconazole and metconazole; prove the bar deposition efficiency with nozzles directed jets the side of the ear resulting in full coverage of trapped anthers; prove the viability of using a warning system (application after the start of flowering before the onset of rains provided for future 24-48 hours and try to improve the efficiency in controlling scab. The experiment was conducted in the experimental field of Technological University Federal do Paraná in the city of Pato Branco, Paraná, conducted in two seasons, the first established on May 6, 2014 and the second on 21 May 2014. It was used to cultivate Amethyst field of OR Improvement seeds, . Passo Fundo, Rio Grande do Sul Treatments consisted of a control without fungicide application and one and two applications of prothioconazole + 17.5% trifloxystrobin (Fox) 500 ml / ha; metconazole 8.0% + pyraclostrobin 13% ( Opera Ultra) 750 mL / ha In the evaluation, second season, metconazole + pyraclostrobin with two application statistically was the treatment that showed a lower incidence in spikes reducing from 100 to 63.3%;. metconazole + pyraclostrobin performed better also in reducing the incidence of spikelets, 80.3% to 34.7%; the control ears had better results in the second season with two applications of metconazole + pyraclostrobin; in spikelets, in his first season, metconazole + pyraclostrobin with two application resulted in better control with 67%; with two applications of metconazole + pyraclostrobin gave the highest yield even under climatic conditions favorable to disease; metconazole + pyraclostrobin in both seasons showed superior efficiency in controlling FHB giving greater weight gain; with two application of both fungicides, the hectoliter weight was 81 and 79, respectively, each fungicide; the application of fungicides was made in advance of expected rain, occurring seven days of rain and a total volume of 85,2mm the first time, and 16 days of rain and an accumulation of 400 mm in the second period; the test efficiency can be confirmed when the direction of the spray jets launched wings coupled in double nozzle bodies perpendicular to the target upright reaches the sides of the spike. The metconazole + pyraclostrobin proved the most effective fungicide against the prothioconazole + trifloxystrobin in wheat scab control in the 2014 harvest.

Thesis (PhD (Viticulture and Oenology. Wine Biotechnology))--Stellenbosch University, 2008. / The occurrence of sluggish and stuck fermentations continues to be a serious problem in the global wine industry, leading to loss of product, low quality wines, cellar management problems and consequently to significant financial losses. Comprehensive research has shown that many different factors can act either in isolation, or more commonly synergistically, to negatively affect fermentative activity of wine yeast strains of the species Saccharomyces cerevisiae. The individual factors most commonly referred to in the literature are various nutrient and oxygen limitations. However, other factors have been shown to contribute to the problem. Because of the mostly synergistic nature of the impacts, no single factor can usually be identified as the primary cause of stuck fermentation. In this study, several strategies to evolutionarily engineer wine yeast strains that are expected to reduce the occurrence of stuck and sluggish fermentations are investigated. In particular, the investigations focus on improving the ability of wine yeast to better respond to two of the factors that commonly contribute to the occurrence of such fermentations, nitrogen limitation and the development of an unfavorable ratio of glucose and fructose during fermentation. The evolutionary engineering strategies relied on mass-mating or mutagenesis of successful commercial wine yeast strains to generate yeast populations of diverse genetic backgrounds. These culture populations were then exposed to enrichment procedures either in continuous or sequential batch cultivation conditions while applying specific evolutionary selection pressures. In one of the stragegies, yeast populations were subjected to continuous cultivation under hexose, and especially fructose, limitation. The data show that the strains selected after this procedure were usually able to out-compete the parental strains in these selective conditions. However, the improved phenotype was not detectable when strains were evaluated in laboratory scale wine fermentations. In contrast, the selection procedure in continuous cultivation in nitrogen limiting conditions proved to be highly efficient for the generation of yeast strains with higher total fermentative capacity in low nitrogen musts. Furthermore, yeast strains selected after mutagenesis and sequential batch cultivation in synthetic musts with a very low glucose on fructose ratio showed a fructose specific improvement in fermentative capacity. This phenotype, which corresponds to the desired outcome, was also present in laboratory scale wine fermentations, where the discrepancy between glucose and fructose utilization of the selected strains was significantly reduced when compared to the parents. Finally, a novel strategy for the rectification of stuck fermentations was adjusted to industrial conditions. The strategy is based on the use of a natural isolate of the yeast species Zygosaccharomyces bailii, which is known for its preference of fructose. This process was successfully established and implemented in the wine industry.

The public concern over synthetic pesticides in foods and the environment has created an interest to find effective and safe non-fungicide means of controlling postharvest pathogens. The overall objective of this thesis was to evaluate the effect of potassium silicate, yeast antagonists and hot water dip treatment to control postharvest grey mould and blue mould of pome fruits, caused by Botrytis cinerea and Penicillium expansum, respectively. Botrytis cinerea and Penicillium expansum were isolated from infected strawberry and pear fruits, respectively. These isolates were found to be non-resistant to YieldPlus® (Anchor yeast, Cape Town, South Africa), a biofungicide containing a yeast Cryptococcus albidus. A total of 100 epiphytic yeast isolates were obtained from the fruit surface of “Golden Delicious” apples and “Packham’s Triumph” pears, and screened against B. cinerea and P. expansum. Fifteen yeast isolates reduced grey mould incidence by > 50%, when applied four hours before inoculation with B. cinerea. Similarly, seven yeast isolates reduced blue mould incidence by > 50%, when applied four hours before inoculation with P. expansum. YieldPlus® and yeast Isolate YP25 provided the best control of B. cinerea, while Isolate YP60 and YieldPlus® provided the best control of P. expansum on “Golden Delicious” apples. A mixture of YP25 and YP60 provided complete control of both B. cinerea and P. expansum, when applied to “Golden Delicious” apples before inoculation with either B. cinerea or P. expansum. Electron microscopy studies showed that yeast Isolates YP25 and YP60 inhibited the mycelial growth of B. cinerea and P. expansum, respectively. Preventative and curative application of potassium silicate resulted in reduced incidence of B. cinerea or P. expansum of “Golden Delicious” apples. Electron microscopy studies indicated that potassium silicate inhibited the growth of B. cinerea and P. expansum. Furthermore, treatment of “Golden Delicious” apples with either potassium chloride or potassium hydroxide resulted in reduced incidence of both B. cinerea and P. expansum. In vivo tests showed that the disease incidence of P. expansum and B. cinerea on “Golden Delicious” apples was reduced by hot water dip treatments at 58-60°C for 60 to 120 seconds, compared with the control fruit treated with sterile distilled water, without causing skin damage. The use of potassium silicate, yeasts (Isolates YP25 and YP60), YieldPlus® and the antagonists mixture (YP25+YP60) in combination, resulted in the control of B. cinerea and P. expansum of “Golden Delicious” apples compared with Imazalil® treated fruit. / Thesis (M.Sc.)-University of KwaZulu-Natal, Pietermaritzburg, 2012.

Les protéines associées aux membranes sont d'une importance cruciale pour la cellule. Cependant, en raison d'une plus grande difficulté de manipulation, les données biochimiques les concernant sont très lacunaires, notamment au point de vue de la formation de complexes entre ces protéines.<p><p>L'objectif global de notre travail consiste à combler ces lacunes et à préciser les interactions entre protéines membranaires chez la levure Saccharomyces cerevisiae et plus précisément, entre les transporteurs. Nous avons commencé notre travail par l'étude d'un jeu de données d'interactions à grande échelle entre toutes les perméases détectées par une méthode de double hybride spécialement adaptée aux protéines insolubles (split ubiquitin). Premièrement, la qualité des données a été estimée en étudiant le comportement global des données et des témoins négatifs et positifs. Les données ont ensuite été standardisées et filtrées de façon à ne conserver que les plus significatives. Ces interactions ont ensuite été étudiées en les modélisant dans un réseau d'interactions que nous avons étudié par des techniques issues de la théorie des graphes. Après une évaluation systématique de différentes méthodes de clustering, nous avons notamment recherché au sein du réseau des groupes de protéines densément interconnectées et de fonctions similaires qui correspondraient éventuellement à des complexes protéiques. Les résultats révélés par l'étude du réseau expérimental se sont révélés assez décevants. En effet, même si nous avons pu retrouver certaines interactions déjà décrites, un bon nombre des interactions filtrées semblait n'avoir aucune réalité biologique et nous n'avons pu retrouver que très peu de modules de protéines de fonction semblable hautement inter-connectées. Parmi ceux-ci, il est apparu que les transporteurs d'acides aminés semblaient interagir entre eux.<p><p>L'approche expérimentale n'ayant eu que peu de succès, nous l'avons contournée en utilisant des méthodes de génomique comparative d'inférence d'interactions fonctionnelles. Dans un premier temps, malgré une évaluation rigoureuse, l'étude des profils phylogénétiques (la prédiction d'interactions fonctionnelles en étudiant la corrééélation des profils de présence - absence des gènes dans un ensemble de génomes), n'a produit que des résultats mitigés car les perméases semblent très peu conservées dès lors que l'on considère d'autres organismes que les \ / Doctorat en Sciences / info:eu-repo/semantics/nonPublished