The dentate gyrus is a region that hosts most of the hippocampal cells in mammals. Nevertheless, its role in spatial memory remains poorly understood, especially in light of the recently-studied phenomenon of adult hippocampal neurogenesis and its possible role in aging and chronic brain disease. We found that chronic over-expression of transforming growth factor beta1 (TGFbeta1), a cytokine involved in neurodegenerative disease, results in several modifications of brain structure, including volumetric changes and persistent astrogliosis. Furthermore, TGFbeta1 over-expression affects the generation of new neurons, leading to an increased number of neurons in the dentate gyrus and deficits in spatial memory acquisition and storage in aged mice. Nonetheless, reducing neurogenesis via pharmacological treatment impairs spatial memory in juvenile mice but not in adult or aged mice. This suggests that the addition of new cells to hippocampal circuitry, and not the increased plasticity of these cells, is the most relevant role of neurogenesis in spatial memory. We tested this idea by modifying proliferation in the dentate gyrus at several ages using multiple techniques and evaluating the incorporation of newborn neurons into hippocampal circuitry. We found that all granule neurons, recently generated or not, have the same probability of being incorporated. Therefore, the number of new neurons participating in memory circuits is proportional to their availability. Our conclusion is that adult-generated cells have the same functional relevance as those generated during development. Together, our data show that the dentate gyrus is important for memory processing and that adult neurogenesis may be relevant to its functionality by optimizing the number of neurons for memory processing. The equilibrium between neurogenesis and optimal dentate gyrus size is disrupted when TGFbeta1 is chronically increased, which occurs in neurodegenerative pathologies, leading to cognitive impairment in aged animals.

The dentate gyrus is a region that hosts most of the hippocampal cells in mammals. Nevertheless, its role in spatial memory remains poorly understood, especially in light of the recently-studied phenomenon of adult hippocampal neurogenesis and its possible role in aging and chronic brain disease. We found that chronic over-expression of transforming growth factor beta1 (TGFbeta1), a cytokine involved in neurodegenerative disease, results in several modifications of brain structure, including volumetric changes and persistent astrogliosis. Furthermore, TGFbeta1 over-expression affects the generation of new neurons, leading to an increased number of neurons in the dentate gyrus and deficits in spatial memory acquisition and storage in aged mice. Nonetheless, reducing neurogenesis via pharmacological treatment impairs spatial memory in juvenile mice but not in adult or aged mice. This suggests that the addition of new cells to hippocampal circuitry, and not the increased plasticity of these cells, is the most relevant role of neurogenesis in spatial memory. We tested this idea by modifying proliferation in the dentate gyrus at several ages using multiple techniques and evaluating the incorporation of newborn neurons into hippocampal circuitry. We found that all granule neurons, recently generated or not, have the same probability of being incorporated. Therefore, the number of new neurons participating in memory circuits is proportional to their availability. Our conclusion is that adult-generated cells have the same functional relevance as those generated during development. Together, our data show that the dentate gyrus is important for memory processing and that adult neurogenesis may be relevant to its functionality by optimizing the number of neurons for memory processing. The equilibrium between neurogenesis and optimal dentate gyrus size is disrupted when TGFbeta1 is chronically increased, which occurs in neurodegenerative pathologies, leading to cognitive impairment in aged animals.

Le vieillissement et la dégénérescence du cerveau, associés à des déficits cognitifs, comportementaux et neurologiques, représentent aujourd'hui un problème majeur de santé publique. L'une des principales maladies liées à l'âge est la maladie d'Alzheimer (MA). L'une des caractéristiques de la MA est l'apparition de plaques amyloïdes, résultant de l'agrégation du peptide ßA4. Physiologiquement, le précurseur de la protéine amyloïde (APP) est clivé par une alpha-sécrétase qui génère un fragment soluble de l'APP (sAPP), important pour la formation de nouvelles cellules nerveuses (neurogenèse). Ce clivage en prévient deux autres, par les béta- et gamma-sécrétases, impliqués dans la MA, et conduisant à la formation du ßA4 toxique. Une analyse du plexus choroïde (PCh) a mis en évidence la forte expression de l’APP par cette structure cérébrale. Le PCh est une structure facilement accessible et produisant le liquide cérébro-spinal : son impact peut donc être répercuté à l’ensemble du cerveau. Il pourrait être une source cérébrale importante d’APP, et contribuer fortement à la pathologie. Mon projet de thèse s'inscrivait dans la possibilité de réguler génétiquement l'expression des formes sauvages et mutées de l'APP au niveau de cette source, et suivre les conséquences sur la neurogenèse adulte et la formation des plaques amyloïdes, marqueur histopathologique de la MA. Par l’utilisation de la thérapie génique pour moduler l’expression de l’APP dans les PCh, nous avons confirmé l’importance de l’APP soluble provenant des PCh dans la neurogenèse adulte. Les PCh semble être une source importante d’APP dans le cerveau, et pourraient avoir un rôle clé dans la maladie d’Alzheimer. / Aging and degeneration of the brain with cognitive decline and neurologic symptoms are major individual and societal problems. The major age-related brain degeneration disease is Alzheimer’s disease (AD) with about 40 million people affected in 2015.Physiologically, the Amyloid Precursor Protein (APP) is cleaved by an alpha-secretase, releasing soluble APP (sAPP) an important regulator of adult neurogenesis. This cleavage prevents two others in positions beta and gamma that generate the ßA4 toxic peptide, a hallmark of Alzheimer Disease.Next generation RNA-sequencing has revealed that APP is the 16th most expressed genes in the choroid plexus (CP), suggesting that it may be a major source of sAPP and ßA4 in the cerebrospinal fluid (CSF). If so, adult neurogenesis in the SVZ and hippocampus may be regulated by the choroid plexus and impeded in mutations favoring ßA4 production. My thesis project fell under the possibility to regulate App expression in the CP, and follow consequences on adult neurogenesis and plaques formation in AD. Using viral vectors to modulate App expression in the CP, we confirmed the importance of sAPP coming from CP in adult neurogenesis. With so, CP seems to be an important source of APPin the brain, and could have a key role in AD.

Of the thousands of dividing progenitor cells (PCs) generated daily in the adult brain only a very small proportion survive to become mature neurons through the process of neurogenesis. Identification of the mechanisms that regulate cell death associated with neurogenesis would aid in harnessing the potential therapeutic value of PCs. Apoptosis, or programmed cell death, is suggested to regulate death of PCs in the adult brain as overexpression of B-cell lymphoma 2 (Bcl-2), an anti-apoptotic protein, enhances the survival of new neurons. To directly assess if Bcl-2 is a regulator of apoptosis in PCs, this study examined the outcome of removal of Bcl-2 from the developing PCs in the adult mouse brain. Retroviral mediated gene transfer of Cre into adult floxed Bcl-2 mice eliminated Bcl-2 from developing PCs and resulted in the complete absence of new neurons at 30 days post viral injection. Similarly, Bcl-2 removal through the use of nestin-induced conditional knockout mice resulted in reduced number of mature neurons. The function of Bcl-2 in the PCs was also dependent on Bcl-2-associated X (BAX) protein, as demonstrated by an increase in new neurons formed following viral-mediated removal of Bcl-2 in BAX knockout mice. Together these findings demonstrate that Bcl-2 is an essential regulator of neurogenesis in the adult hippocampus.

One mechanism of plasticity within the adult mammalian brain is the dynamic process of adult neurogenesis that is functionally important in physiological and pathological conditions. During this process, neurons develop from adult neural stem cells (NSCs) via intermediate neural progenitors (NPCs) through several processes including proliferation, survival, differentiation, migration and integration. Despite neurogenesis during development sharing these same processes, there is growing evidence highlighting unique mechanisms that regulate adult versus embryonic neurogenesis. The studies in this thesis test the cell-intrinsic function of genes that have defined roles in embryonic neurogenesis and undefined roles in adult hippocampal neurogenesis using a combination of transgenic inducible mice and in vivo retroviral techniques. The first study examines the microtubule associated protein Doublecortin (DCX), which is transiently expressed by NPCs and is critical for neuronal migration. Our results show that, in the context of adult hippocampal neurogenesis, DCX is not required for the survival or differentiation of the NPCs within the subgranular zone (SGZ). The second study examines the functional role of the autophagy-associated gene 5 (Atg5) which is critical for embryonic neurogenesis and survival. Our findings demonstrate that the intracellular recycling process of autophagy is active throughout maturation of adult hippocampal NPCs and that ablation of Atg5 produces a drastic reduction in NPC survival, without altering the neuronal fate of these cells. The third study examines the requirement of the familial-Alzheimer’s disease associated genes, presenilin 1 and presenilin 2 (PS1 & PS2), which are critical for embryonic NSC maintenance and differentiation. Similar to the findings with DCX, our results demonstrate that presenilins are dispensable for adult neurogenesis. Altogether, these studies add to the growing evidence suggesting differences in the regulation of adult versus embryonic neurogenesis, and highlight autophagy as a novel regulator of survival for adult generated granule neurons in the hippocampus.

La neurogenèse hippocampique adulte fait référence à la création de neurones durant la vie adulte dans le gyrus denté de l’hippocampe. Une décennie de recherche a démontré l’importance de cette neurogenèse chez l’adulte dans les processus de mémoire. En particulier, la neurogenèse adulte est nécessaire à l’apprentissage spatial et l’apprentissage spatial lui-même augmente la survie et accélère le développement d’une population de nouveaux neurones immatures. Cependant, l’implication de ces nouveaux neurones « sélectionnés » par l’apprentissage dans le devenir de la mémoire reste incertaine. En conséquence, le travail de cette thèse porte sur l’étude du rôle de ces nouveaux neurones dans les processus de mémoire spatiale à long terme résultants de l’apprentissage d’origine, comme la restitution et la reconsolidation de la mémoire. En effet depuis plus d’un siècle, on sait qu’un apprentissage n’induit pas immédiatement une mémoire stable. Les souvenirs sont tout d’abord fragiles, puis vont au fil du temps devenir stables et insensibles aux perturbations via un processus appelé «consolidation de la mémoire». Cependant ce processus n’est pas immuable ; les souvenirs établis peuvent à nouveau devenir labiles lorsqu'ils sont rappelés ou réactivés lors d’une restitution de la mémoire. Cette déstabilisation d’une mémoire consolidée nécessite alors un nouveau processus de stabilisation appelé « reconsolidation de la mémoire ». Depuis sa découverte, la reconsolidation a vivement intéressé le milieu de la recherche sur la mémoire et un nombre croissant d’études a cherché à comprendre les mécanismes sous-tendant cette reconsolidation, en particulier dans l'hippocampe. Étonnamment, le processus de reconsolidation n’a été que très peu envisagé dans le contexte de la neurogenèse hippocampique adulte.Nous avons tout d’abord mis au point un protocole de reconsolidation de la mémoire spatiale du rat dans le labyrinthe aquatique de Morris. Cela nous a permis de montrer que les néo-neurones nés avant l’apprentissage étaient activés lors de la reconsolidation de la mémoire spatiale, ce qui n’est pas le cas des neurones issus du développement précoce. Afin de pouvoir établir une relation de causalité entre néo-neurones et processus de reconsolidation, nous avons ensuite développé un outil basé sur la technique pharmacogénétique des DREADDs (Designer Receptors Exclusively Activated by Designer Drugs) couplés à un rétrovirus. Cet outil permet de marquer les néo-neurones à leur naissance et de les manipuler (inhiber ou stimuler l’activation) plus tard, lors des processus de mémoire à long terme. Nous avons observé que les néo-neurones immatures modifiés par l’apprentissage étaient non seulement activés par la reconsolidation mais également nécessaire à celle-ci, à l’inverse des néo-neurones matures au moment de l’apprentissage. Nous avons enfin montré que stimuler l’activité des néo-neurones au moment de la restitution de la mémoire améliorait les performances des rats dans le labyrinthe aquatique.Ensemble, ces résultats de thèse soulignent le rôle critique de la neurogenèse hippocampique adulte dans la stabilisation de la mémoire spatiale à long terme. / Adult hippocampal neurogenesis refers to the creation of neurons during adult life in the dentate gyrus of the hippocampus. A decade of research has demonstrated the importance of this adult neurogenesis in memory processes. In particular, adult neurogenesis is necessary for spatial learning and spatial learning itself increases survival and accelerates the development of a population of new immature neurons. However, the involvement of these new modified / promoted / amplified / selected neurons by learning in the fate of memory remains unclear. The work of this thesis focuses on the study of the role of these new neurons in the long-term spatial memory processes resulting from the original learning, such as retrieval and reconsolidation.For more than a century, we know that learning does not immediately induce a stable memory. Memories are fragile at first and then become stable and insensitive to interferences over time, through a process called “memory consolidation". However this process is not immutable; the established memories can become labile again when they are reactivated during memory recall. This destabilization of a consolidated memory requires then a new stabilization process called "memory reconsolidation". Since its discovery, the reconsolidation process has strongly interested the memory research community and a growing number of studies have sought to understand the mechanisms underlying this reconsolidation, particularly in the hippocampus. Surprisingly, the process of reconsolidation has rarely been considered in the context of adult hippocampal neurogenesis.We first developed a protocol for memory reconsolidation of spatial memory in the Morris water maze in rats. This allowed us to show that new neurons born before learning were activated during reconsolidation of spatial memory, which is not the case of the neurons generated during the early development. In order to establish a causal relationship between new neurons and reconsolidation, we developed a tool based on the pharmacogenetic technique of DREADDs (Designer Receptors Exclusively Activated by Designer Drugs) coupled with a retrovirus. This tool is used to tag new neurons at their birth and manipulate them (inhibit or stimulate their activation) later during long-term memory processes. We observed that the population of neurons that were immature at the time of learning are not only activated by but also necessary for reconsolidation, unlike new neurons that were mature at the time of learning. We have finally shown that stimulating the activity of new neurons during retrieval improves the performance of rats in the water maze.All together, these thesis results highlight the critical role of adult hippocampal neurogenesis in long-term spatial memory stabilization.

Depuis la découverte fondatrice de la présence de cellules souches neurales (NSCs) multipotentes dans le cerveau des mammifères adultes, plusieurs études ont révélé l'importance de ces cellules pour le maintien de l'homéostasie du cerveau. Notamment, des perturbations dans l'équilibre des NSCs ont été associées au vieillissement et à diverses pathologies neurologiques, ce qui suscite un intérêt croissant pour ces cellules. Les NSCs résident dans des zones germinatives restreintes; dans le rongeur adulte les NSCs sont localisées principalement dans deux niches neurogéniques bien établies dans le télencéphale, ce qui contraste avec la situation chez le poisson zèbre adulte où des niches de NSCs actives ont été identifiées dans tout le cerveau, y compris dans le télencéphale dorsal (pallium). Aussi bien chez les rongeurs que le poisson zèbre, les NSCs adultes présentent les deux propriétés fondamentales des cellules souches: elles sont multipotentes, c’est-à-dire capables de générer de nouveaux neurones et cellules gliales, et ont la capacité d'auto-renouvellement à long terme, permettant leur maintien au long de la vie adulte. A la différence des progéniteurs neuronaux embryonnaires (NPCs), une caractéristique de ces NSCs adultes est qu’elles résident la plupart du temps dans un état d’arrêt réversible du cycle cellulaire appelé quiescence. Cet état, activement maintenu, est censé protéger la réserve de NSCs d’un épuisement prématuré, d’où l'importance de déchiffrer les mécanismes moléculaires de régulation de l’équilibre entre la quiescence et l’activation de ces cellules vers la neurogenèse.Les microARNs constituent une classe de petits ARN régulateurs, qui jouent un rôle crucial dans le contrôle d’états cellulaires et des transitions entre ces états. Ils sont capables de réagir rapidement à des signaux à la fois intra- et extracellulaires, qui peuvent moduler aussi bien leur niveau d’expression que leur impact fonctionnel, leur donnant ainsi la capacité de coordonner diverses signaux pour induire des transitions d'état cellulaire. Un microARN en particulier, miR-9, a été montré comme jouant un rôle clé et conservé au cours de la neurogenèse embryonnaire. L'objectif principal de cette étude était d'étudier, pour la première fois, un rôle potentiel de miR-9 dans le contrôle des NSCs, dans un contexte physiologique dans lequel la majorité des NSCs sont quiescentes - le pallium adulte du poisson zèbre. Nous avons constaté que miR-9 est exclusivement exprimé dans une sous-partie des NSCs, met vraisemblablement en évidence un « sous-état » de quiescence. De plus, nous avons pu montrer que miR-9 ancre les NSCs dans un état de quiescence, en partie via le maintien d’un niveau élevé d’activation de la voie de signalisation Notch. De façon surprenante, nous avons également identifié une modification de la localisation subcellulaire de miR-9 au cours du temps: alors que miR-9 est localisé dans le cytoplasme de tous les NPCs chez l’embryon ou le juvenile, chez le poisson adulte miR-9 est localisé dans le noyau des NSCs en quiescence. En outre, la localisation nucléaire de miR-9 dans ces NSCs quiescentes est fortement corrélée avec la localisation nucléaire des protéines effectrices des microARNs, les protéines Argonaute (Agos), ce qui suggère un rôle fonctionnel de miR-9 dans le noyau. De fait, l'élucidation du mécanisme de transport nucléo-cytoplasmique de miR-9/Agos nous a permis de manipuler leur localisation, et d’observer un impact de cette localisation sur l’état de quiescence vs activation des NSCs. L’ensemble des résultats de cette étude identifient ainsi miR-9 comme un régulateur essentiel de la quiescence des NSCs, fournissent pour la première fois un marqueur moléculaire d’un sous-état de quiescence spécifique du cerveau adulte et suggèrent l'implication d'un mécanisme inédit de régulation par les microARNs dans le maintien de l'homéostasie des réserves de NSCs. / Since the seminal discovery of multipotent neural stem cells (NSCs) in the adult mammalian brain, multiple studies have unravelled the importance of these cells for maintaining brain homeostasis. Notably, disturbances in NSC equilibrium have been linked to physiological aging and various neurological pathologies thus sparkling interest in harnessing them for use in regenerative medicine. NSCs reside in distinct germinal zones; in the adult rodent brain NSCs are found mainly in two well-established neurogenic niches in the telencephalon which contrasts with the situation in the adult zebrafish where NSC niches are widespread throughout the brain, including in the dorsal telencephalon or pallium. In both the rodent and zebrafish brains, adult NSCs display fundamental stem cell properties: they are multipotent, e.g. capable of generating new neurons and glia throughout adult life, and have the capacity for long-term self-renewal. Similar to stem cells in other adult tissues, and in contrast to embryonic neural progenitors, a hallmark of these adult NSCs is their relative proliferative quiescence. Quiescence is an actively maintained, reversible state of cell-cycle arrest and generally thought to protect against exhaustion of the stem cell pool. In line with this, disrupting the balance between quiescent and activated NSCs leads to a premature depletion or permanent cell-cycle exit of these cells highlighting the importance of fully deciphering the mechanisms regulating this equilibrium. microRNAs, a major class of small pleiotropic regulatory RNAs, play crucial roles in reinforcing developmental and transitional states. They are capable of reacting to environmental cues, both cell-intrinsic and -extrinsic, with varying outputs such as changing their regulatory functions and expression levels, thus enabling them to coordinating diverse cues to induce cell-state transitions. One microRNA in particular, miR-9, is a highly conserved master regulator of embryonic neurogenesis and in the embryonic zebrafish brain, it establishes a primed neural progenitor state enabling them to quickly respond to cues to differentiate or proliferate. The primary goal of this study was to investigate, for the first time, a potential role for miR-9 in influencing NSC state in a physiological context in which the majority of NSCs are quiescent – the adult zebrafish pallium. We found that miR-9 is exclusively expressed in quiescent NSCs and highlights a “sub-state” within quiescence. In part by maintaining high levels of Notch signalling, a known quiescence promoting pathway, miR-9 anchors NSCs in the quiescent state. Strikingly, we identified a conserved age-associated change in the subcellular localization of the mature miR-9 from the cytoplasm of all embryonic/juvenile neural progenitors to the nucleus of a subset of quiescent NSCs in the adult brain. Moreover, the nuclear expression of miR-9 in these quiescent NSCs is highly correlated with nuclear localization of the microRNAs effector proteins Argonaute (Agos), suggestive of a functional role for nuclear miR-9. Indeed, the elucidation of the nuclear-cytoplasmic transport mechanism of miR-9/Agos enabled us to manipulate their nuclear to cytoplasmic ratios which directly impacted NSC state. Altogether, these results identify miR-9 as a crucial regulator of NSC quiescence, provide for the first time a molecular marker for an age-associated sub-state of quiescence and suggest the involvement of a novel and unconventional microRNA-mediated mechanism to maintain homeostasis of NSC pools.

The overall architecture and cell types are highly conserved from mammals to teleost fish. The rapid transparent ex utero development in zebrafish allows direct access and precise visualization of all the major events in cerebellar development. The superficial position of the cerebellar primoridum and cerebellum further facilitates in vivo imaging of cerebellar structures and developmental events at cell resolution. Furthermore, zebrafish model have a comprehensive genetic toolbox that allow forward and reverse genetic approaches to study and manipulate gene function. Consequently, zebrafish is emerging as an excellent vertebrate model for studies of molecular, cellular and physiological mechanisms involved in cerebellar development and function at gene, cell and circuit level.

Pattern separation is the means by which the brain discriminates similar experiences. It enables retrieval of individuated memories without confusing them with other memories. It is the reason one remembers where one parked the car today and does not mix it up with where one parked it previously. Adult neurogenesis refers to the ongoing production of neurons in the mature brain. One of the likely roles of adult neurogenesis in the hippocampus is facilitating pattern separation. Induced reduction of adult neurogenesis in non-human animals is associated with depression- and anxiety-like behaviors. One possible explanation is that reduced neurogenesis leads to reduced pattern separation, further leading to overgeneralization of threat situations. Instead of perceiving threats where it should, the animal risks perceiving threats everywhere. Emotional resilience is the ability to recover from adversity with a minimum of lingering negative effects such as depression or anxiety. This thesis investigates whether pattern separation in the human hippocampus supports emotional resilience. I performed a systematic review of studies that used the Mnemonic Similarity Task – a memory task commonly used to measure human pattern separation – to investigate the relationship between pattern separation and anxiety. The results are inconclusive but suggest a possible interaction effect whereby pattern separation and high-arousal states like stress predict anxiety. Together with the evidence from the non-human animal studies, this suggests that reduced pattern separation as caused by reduced neurogenesis could make one vulnerable to developing anxiety disorders.

Neuronal Nuclei (NeuN) and Doublecortin (DCX) are neuron specific proteins that are used in histological studies of brain structure in a variety of vertebrate taxa.Antibodies against NeuN (anti-NeuN) bind to the Fox-3 protein, an RNA binding protein common in mature neurons. Anti-DCX labels a microtubule-associated protein expressed in actively dividing neural progenitor cells and migrating neurons. The DCX gene encodes a protein that is well conserved across mammalian, avian, and a few reptilian species, therefore anti-DCX staining has been used successfully across a range of vertebrate taxa. Successful neuronal staining using anti-NeuN has been demonstrated in mammals, birds, and the Testudines order (turtles). However, herpetologists who study neurobiology in squamates have had limited success with anti-NeuN and anti-DCX binding to their respective antigens. All commercially available anti-NeuN and anti-DCX antiserums were designed to mammalian antigens, and significant differences in tertiary structure divergence at the epitope where these antibodies bind may explain the failure of anti-NeuN and anti-DCX immunohistochemistry in many squamate species. This study aims to characterize evolutionary differences in gene and protein structure between two species of reptiles (Crotalus oreganus and Sceloporus occidentalis) and mammals. We sequenced the Fox-3 and DCX coding sequences using polymerase chain reaction (PCR) and Sanger sequencing, which allowed us to build phylogenetic trees comparing Fox-3 and DCX deduced protein structures. By identifying structural differences linked to evolutionary variation, new polyclonal antibodies specifically targeting Fox-3 and DCX in reptile brains can be developed to facilitate future investigations of neurogenesis and brain structure in squamate reptiles.