<p> Macro-borings and other biogenic structures found in Ostrea glabra valves were examined using a dissecting microscope, SEM and X-radiography. Shells were collected from in situ and transported oyster beds of the Bearpaw-Horseshoe Canyon Formation transition (Upper Cretaceous) at Drumheller, Alberta. Emended diagnoses for Entobia, Talpina and Zapfella were proposed and systematic descriptions of these ichnogenera along with Oichnus were done. Repair blisters and partitions apparently formed by the oyster in response to irritations were also described and interpreted. It was confirmed that statistical analysis could differentiate between round holes drilled by naticids and muricids. It was possible to define fossil micro-environments on the basis of an interpretation of taphonomy and paleoecology considered within the sedimentary context.</p> / Thesis / Bachelor of Science (BSc)

The catecholamines norepinephrine and epinephrine are important regulators of vertebrate physiology. Insects such as honeybees do not synthesize these neuroactive substances. Instead, they use the phenolamines tyramine and octopamine for similar physiological functions. These biogenic amines activate specific members of the large protein family of G protein-coupled receptors (GPCRs). Based on molecular and pharmacological data, insect octopamine receptors were classified as either - or -adrenergic-like octopamine receptors. Currently, one - and four -receptors have been molecularly and pharmacologically characterized in the honeybee. Recently, an 2-adrenergic-like octopamine receptor was identified in Drosophila melanogaster (DmOct2R). This receptor is activated by octopamine and other biogenic amines and causes a decrease in intracellular cAMP ([cAMP]i). Here, we show that the orthologous receptor of the honeybee (AmOct2R), phylogenetically groups in a clade closely related to human 2-adrenergic receptors. When heterologously expressed in an eukaryotic cell line, AmOct2R causes a decrease in [cAMP]i. The receptor displays a pronounced preference for octopamine over tyramine. In contrast to DmOct2R, the honeybee receptor is not activated by serotonin. Its activity can be blocked eciently by 5-carboxamidotryptamine and phentolamine. The functional characterization of AmOct2R now adds a sixth member to this subfamily of monoaminergic receptors in the honeybee and is an important step towards understanding the actions of octopamine in honeybee behavior and physiology.

No description available.

No description available.

Emissions from natural ecosystems, broadly classified as biogenic volatile organic compounds (BVOCs), contribute 90\% to the VOC budget. Individual BVOCs vary widely in their reaction rates with atmospheric oxidants, making their atmospheric impact highly dependent on VOC composition. Their emissions are also dependent on vegetative make up and a number of meteorological and ecological variables. However, the ecological and physical drivers of their emissions is becoming more variable in a changing climate, leading to greater uncertainties in models. Increasing the monitoring of individual compounds can improve our understanding of the drivers of these emissions and the impact of individual chemical species on atmospheric composition. Improved understanding of BVOC composition can better emission models and, SOA and ozone formation predictions. To study the atmospheric impacts and physical drivers of BVOCs, a GC-FID was adapted for automated hourly sampling and analysis. The details of the hardware and software used for the system are described in detail to enable future long-term BVOC measurements in additional locations. The instrument was deployed at a measurement tower in a forest in central Virginia for year-round collection of BVOC concentrations. Using two years of collected hourly data, this work assesses the chemical impacts of individual BVOCs on time scales ranging from hour to year. This work identifies the importance of both concentration and chemical structure in determining atmospheric impacts. Additionally, seasonality in the concentration of some biogenic species has large implications for atmospheric reactivity in the warmest months of the year, particularly ozone reactivity. Using ecological and meteorological data collected at the site in conjunction with the BVOC data, the drivers of BVOC concentrations and their seasonality are identified. Comparison between this data and current models, reveal important deviations which may lead to large modeled uncertainties. Furthermore, the collected data has been made publicly available to aid in future research regarding BVOCs. / Doctor of Philosophy / The earth hosts a number of sources of atmospheric emissions. These range from human-driven sources such as vehicles and factories, to natural sources such as trees and grass. The content of these emissions, amongst others, become a part of a large reactor (the atmosphere), that interact with each other. The interaction of these emissions with atmospheric oxidants forms a gas (ozone) with implications for human and ecosystem health, and secondary organic aerosol (the leading component to smog). However, the extent to which these emissions react with atmospheric oxidants is largely dependent on the structure of individual compounds. A major focus of this dissertation is to show that compounds with reactive structures can have a large impact on atmospheric composition, and that the quantity of emissions can be as important as compound structure. Understanding the impact of individual compounds in the atmosphere requires improved measurement techniques, capable of detecting the compounds of interest over long time periods. Therefore, another focus of this work was the adaptation and deployment of an instrument capable of detecting some of the most reactive species in the atmosphere, volatile organic compounds emitted from forests. The instrument deployed in this work was a gas chromatography flame ionization detector (GC-FID), which detects compounds largely composed of carbon and hydrogen. The instrument was adapted to run automatically through the development of an electronics box and software program interfaced with the GC-FID. Following development, the instrument was deployed to a remote forest research site for two years. The data collected from this work was used to determine the impact of individual compounds on atmospheric composition. Findings from this work could be used to improve a range of atmospheric models. Small changes in emissions (human or plant) contribute to the total VOC budget which can have large implications for the formation of ozone and SOA. Therefore, increased understanding of the BVOC concentrations and emission driver will aid in predicting these atmospheric components.

The roles of ocelli and octopamine in regulating the onset, intensity, and duration of cabbage looper moth flight activity were examined. This was achieved by studying the flight activity of control, sham, and anocellate moths with and without octopamine treatment. Sham and anocellate moths were produced by cauterization in last-instar larvae, of ocellar primordial cells for anocellate moths, and of non-involved cells for sham moths. Flight activity of moths was monitored by a computerized actograph under normal light (LD) conditions, under advanced-sunset, and under constant dark (DD) conditions to determine the effect of ocelli on flight activity. The role of octopamine was investigated by treating the three groups of moths topically with octopamine dissolved in dimethyl sulfoxide (DMSO) and with DMSO alone, and comparing flight activity before and after treatment. Results support a combined role for ocelli and the compound eyes in determining flight initiation times, and a role for ocelli in determining flight intensity. These roles were more pronounced in males than in females. It was found that the cauterization operation itself decreases flight activity in sham moths. No evidence was found that supports the existence of an octopamine effect on flight activity in any of the groups of moths when octopamine is topically applied. / Master of Science

Biogenic volatile organic compounds (BVOCs) are naturally occurring organic compounds emitted by plants, trees, and ecosystems, exerting a profound influence on the Earth's atmosphere, air quality, climate, and ecosystem dynamics. This research project aims to advance our understanding of BVOC emissions and their implications through a comprehensive and multi-faceted investigation. We investigate the dynamics of BVOCs in the atmosphere through three key objectives. First, we introduce a novel enriching inlet that uses selective permeation to preconcentrate reactive organic gases in small sample flows for atmospheric gas sampling, enhancing the sensitivity and detection limits of analytical instruments. Enrichments between 4640% and 111% were measured for major reactive atmospheric gases at ultra low flow rates and roughly several hundred percent for ambient samples at moderately low flow rates. Second, we constrain light-dependency in BVOC emissions models by comparing modeled and long-term observed BVOC concentrations measured at a mid-canopy monitoring site in a southeastern US forest. The Model of Emissions of Gases and Aerosols from Nature (MEGAN) and the Framework for 0-D Atmospheric Modeling (F0AM) were utilized to simulate emissions and chemical transformations, respectively to disentangle the time- and species-specificity of light dependency for various BVOC (α-pinene, camphene, and α-fenchene are completely light-independent and limonene, β-thujene, sabinene, and γ-terpinene are seasonally light-dependent). Finally, we examine these models deeper to investigate uncertainties and highlight current limitations due to variability in planetary boundary layer height (PBLH) datasets. We highlight the significance of simultaneous PBLH and BVOC measurements for improving the accuracy of BVOC concentration models. We show that a lack of co-located measurements is a large source of uncertainty in modeling BVOC concentrations. The successful completion of these objectives contributes to a better understanding of the complex interactions between BVOC emissions and atmospheric chemistry. / Doctor of Philosophy / Biogenic volatile organic compounds (BVOCs) are natural chemicals released by plants, trees, and ecosystems. They interact with combustion emissions such as those from vehicles (nitrous oxides or NOX species) in the presence of light to produce secondary pollutants such as ozone and particulate matter which significantly affect human health, Earth's atmosphere, air quality, climate, and ecosystems. This research aims to deepen our understanding of BVOC emissions and their effects through a detailed study of measurement and modeling techniques used to study BVOC. We accomplish this via three main goals. First, we introduce a new method to enhance the detection of reactive gases in small air samples, improving the sensitivity of currently available analytical instruments. This method showed significant improvements in detecting key atmospheric gases. Second, we examine how BVOC emissions depend on light by comparing models with long-term observations from a forest in the southeastern US. We used two models, Model of Emissions of Gases and Aerosols from Nature (MEGAN) and Framework for 0-D Atmospheric Modeling (F0AM), to simulate emissions and chemical changes, revealing that some BVOC emissions are completely light-independent processes, while others depend on the season. Finally, we examine these models deeper to investigate the uncertainties due to variability in planetary boundary layer height (PBLH) datasets (the layer of air closest to the Earth's surface where pollutants are concentrated). We show that a lack of BVOC and PBLH measurements made at the same location is a large source of uncertainty in modeling BVOC concentrations. Achieving these goals will enhance our understanding of the complex interactions between BVOC emissions and atmospheric chemistry.

Thesis (MScAgric (Viticulture and Oenology))--University of Stellenbosch, 2007. / Biogenic amines are nitrogenous compounds of low molecular weight found in most fermented foods, including wine. These biologically produced amines are essential at low concentrations for normal metabolic and physiological functions in animals, plants and micro-organisms. However, biogenic amines can have adverse effects at high concentrations and pose a health risk for sensitive individuals. Symptoms include nausea, hot flushes, headaches, red rashes, respiratory distress and fluctuations in blood pressure. A number of countries have implemented upper limits for histamine in food and wine. This development has already started to threaten commercial export transactions and may become more serious in the near future, especially in the competitive wine industry of today. The most important biogenic amines in wine include histamine, tyramine, putrescine, cadaverine and phenylethylamine which are produced from the amino acids histidine, tyrosine, ornithine, lysine and phenylalanine respectively. Biogenic amines are mainly produced in wine by microbial decarboxylation of the corresponding precursor amino acid. It may be produced by yeast during alcoholic fermentation, by lactic acid bacteria during malolactic fermentation, or potentially by spoilage microbes such as acetic acid bacteria and Brettanomyces. However, lactic acid bacteria are widely accepted as the main causative agents. Inoculation with commercial malolactic fermentation starter cultures that do not possess the relevant decarboxylase genes may inhibit the growth and activity of decarboxylase positive indigenous bacteria and as such control the production of biogenic amines in wine. In this study it was shown that co-inoculation of malolactic starter cultures together with alcoholic fermentation could reduce the incidence of biogenic amines in wine compared to conventional inoculation protocols; presumably because undesirable activities were restrained at an earlier stage during co-inoculation. It was also indicated in this work that in some cases the effect of co-inoculation on biogenic amine reduction may only be visible after a period of ageing. The frequency of biogenic amine occurrence in wines aged for a short period was generally higher in the presence of fermentation lees than in its absence. This work also included a preliminary investigation into the contribution of commercial wine yeast starter cultures to biogenic amine production. Diamines and polyamines (putrescine, spermidine and cadaverine) were produced to variable extents by all yeasts with very little or no production of physiologically important biogenic amines (histamine, tyramine and phenylethylamine). Another objective of this study was to evaluate the influence of common winemaking practices on biogenic amine production under winemaking conditions. We have shown that biogenic amine production by lactic acid bacteria could be influenced, amongst others, by the presence of precursor amino acids in the grape must or wine, the time of contact between juice or wine and grape skins, the time of contact between wine and yeast lees, the presence of microbial nutrients, wine pH, sulphite and ethanol levels, the phenolic composition of the wine and the number of decarboxylase positive lactic acid bacteria present in the wine. Lately, the wine industry is under increasing pressure to increase measures to ensure food safety and security and to eliminate any compound, present even in trace amounts that could reduce the wholesomeness of the wine. The need arises for a rapid and inexpensive method for quality control. In this study we investigated the potential to use Fourier transform infrared spectroscopy to rapidly screen for the presence of elevated levels of biogenic amines. This presents a novel method for the detection and quantification of total biogenic amines in wines.

La souche Carnobacterium maltaromaticum LMA 28, isolée d’un fromage à pâte molle, possède des propriétés physiologiques non conventionnelles pour une bactérie lactique. Sa croissance en TSB-YE et en lait traduisent son exigence nutritionnelle en facteurs de croissance facilement assimilables et sa faible vitesse de production d’acide lactique à partir de glucose, lactose, fructose et saccharose. Le galactose n’est pas métabolisé et lors de l’hydrolyse du lactose n’est pas excrété dans le milieu de culture. Les caillés lactiques sont obtenus après des durées d’incubation non compatibles avec les cadences industrielles. De plus, ils présentent une texture très friable. La numération et l’identification de cette souche, en vue de suivre son comportement dans une matrice fromagère, ont été optimisées par la mise au point du milieu de culture sélectif CM, à l’aide de plan d’expériences, et par la technique de PCR. Le comportement de C. maltaromaticum LMA 28 a été comparé à ceux de deux souches lactiques d’intérêt technologique Lc. lactis DSM 20481 et S. thermophilus INRA 302, dans une large gamme de températures (3 à 37 °C) et de pH (5,2- 8,0). Des essais en co-culture, associant cette souche avec Lc. lactis DSM 20481 ou avec S. thermophilus INRA 302, ont montré que la production d’acide lactique était due à la croissance de la souche lactique traditionnelle. Cependant C. maltaromaticum LMA 28, souche lente, n’est pas inhibée par cette acidification. L’aptitude fromagère de C. maltaromaticum LMA 28 a été testée lors de deux fabrications de fromages à pâte molle. Inoculée à différents niveaux de population, elle a été mise en évidence à tous les stades de la fabrication. Présente à une concentration très faible dans le lait de fabrication, elle devient une flore lactique dominante après l’affinage et le stockage en réfrigération. Cette aptitude technologique est en relation avec son caractère psychrotrophe et sa faculté à se développer activement à des pH alcalins. Son « alimentarité », testée par la production d’amines biogènes, a montré des niveaux nuls ou très faibles en tyramine et en histamine, comme avec S. thermophilus INRA 302 et avec Lc. lactis DSM 20481. L’optimisation de sa production de flaveurs maltées a été abordée sur milieu TSB-YE et sur lait, supplémentés avec de la leucine, de l’isoleucine ou de la valine. La production de 3-méthylbutanal est la plus importante. Les analyses sensorielles des fromages contenant des niveaux de population importants (108-109 ufc.g-1) de C. maltaromaticum LMA 28 n’ont pas permis de mettre en évidence cet arôme. Présente dans de nombreux fromages français AOC ou non AOC, cette espèce opportuniste, de statut GRAS, pourrait être considérée comme un auxiliaire de fabrication intéressant, car elle permet un ralentissement du vieillissement des fromages, en évitant notamment l’apparition de flaveurs désagréables. Cette flore lactique psychrotrophe pourrait être retenue comme flore bactérienne d’affinage / The C. maltaromaticum LMA 28 bacteria strain, isolated from soft cheese, was observed to possess non conventional lactic bacteria physiological properties. Its growth in TSB YE medium and milk was found to be characterised by the requirements for easily assimilated growth nutrients and a low kinetic rate of lactic acid production from glucose, lactose, fructose and sucrose. In addition, it was found to not metabolise galactose or not excrete it during the hydrolysis of lactose. In the process of milk fermentation, it not only took an unusually long duration but produced products of fragile texture. In order to eventually determine the behaviour of this strain in the process of cheese-making, a selective culture medium CM was developed using an experimental design and PCR techniques for its isolation and identification. The behaviour of C. maltaromaticum LMA 28 was compared with that of two strains of lactic bacteria of technological interest namely Lc. lactis DSM 20481 and S. thermophilus INRA 302, within a wide temperature range (3 to 37°C) and of pH (5.2 – 8.0). Tests carried out in co-culture associating this strain with Lc. lactis DSM 20481 or with S. thermophilus INRA 302 showed that the lactic acid production was due mainly to the growth of the traditional lactic strain. In the process, the C. maltaromaticum LMA 28 slow strain was observed not to be inhibited by acidification. The cheese-making potential of C. maltaromaticum LMA 28 was evaluated in the process of two soft cheese manufactures. Inoculated at various levels of population, it was observed to be present at all manufacturing stages. Generally present at very weak concentrations in the starting milk, it becomes a dominant lactic flora following ripening and refrigeration storage. This technological aptitude is in relation with its psychrotrophic character and its ability to actively develop in alkaline medium. Its “alimentarity”, tested by its ability to produce biogenic amines, showed zero or very low levels in tyramine and histamine, as in the case of S. thermophilus INRA 302 and Lc. lactis DSM 20481. The optimization of its malted flavour production capacity was carried out on a TSB-YE medium and on milk supplemented with leucine, isoleucine or valine. In this process the production of 3-méthylbutanal was observed to be the most abundant product while cheese containing high levels (108-109 ufc.g-1) of C. maltaromaticum LMA 28 did not exhibit this flavour. This notwithstanding, the presence of this species of GRAS status in many French AOC and non AOC cheeses could be considered as an interesting auxiliary in cheese manufacturing process since it tends to slow down the aging process and thereby retard the development of unpleasant flavours. In this respect this strain of psychotrophic lactic bacteria could be retained as a flora for cheese ripening process

As leveduras Saccharomyces cerevisiae são consideradas importantes matérias primas na nutrição animal pela sua capacidade prebiótica. Os prebióticos são compostos não digeridos pelo organismo animal, mas que são fermentados pelos microrganismos do trato gastrintestinal, cujos produtos são capazes de prover benefícios ao hospedeiro. A fermentação depende de fatores como: substrato utilizado para o seu crescimento, método de fermentação, modo e condição de secagem e idade das células. Assim, os processos produtivos modernos têm como intuito a produção de leveduras com elevado potencial prebiótico. Este estudo objetivou avaliar os efeitos de teores crescentes de leveduras com metabólitos ativos (LSC; baseada na fermentação de substratos específicos) na digestibilidade aparente dos nutrientes da dieta, microbiota e produtos da fermentação fecal e parâmetros imunológicos de gatos adultos. Foram utilizados 27 gatos adultos, idade média de 9,44&#177;5,35 anos, machos e fêmeas, sem raça definida e saudáveis. Os animais foram distribuídos em delineamento em blocos casualizados (idade), constituído de três tratamentos experimentais, denominados: DC (dieta controle), LSC 0,3 (dieta controle com 0,3% de leveduras com metabólitos ativos) e LSC 0,6 (dieta controle com 0,6% de leveduras com metabólitos ativos). Os resultados obtidos foram analisados através do programa computacional Statistical Analysis System (SAS Institute Inc., 2004), sendo considerados significativos valores de p&lt;0,05 e as médias comparadas pelo teste de Tukey. Verificou-se que a inclusão do aditivo alterou apenas a digestibilidade aparente da fibra bruta, da matéria mineral e energia metabolizável (p&lt;0,05). Já em relação aos produtos da fermentação e microbiota das fezes, observou-se redução em ácido lático (p&#61;0,0040) e Clostridium perfringens (p&#61;0,0226) com a inclusão do prebiótico e diminuição do ácido isovalérico (p&#61;0,0144) no tratamento LSC 0,3. Pode-se concluir que o aditivo, nos teores de inclusão avaliados, parece apresentar potencial prebiótico em relação aos produtos da fermentação e microbiota fecal / Saccharomyces cerevisiae yeast are considered important raw materials in animal nutrition due their prebiotic capacity. Prebiotics are compounds not digested by animal organism, but are fermented by microorganisms in the gastrointestinal tract, which products are capable of providing benefits to the host. The fermentation depends on factors such as: substrate used for growth, fermentation method, way and drying condition and age of the cells. Thus, modern production processes have the objective of producing yeast with high prebiotic potential. This study aimed to evaluate the effects of increasing levels of yeast with active metabolites (LSC) based on the fermentation of specific substrates on apparent digestibility of diet nutrients, microbiota and fecal fermentation products and immunological parameters in adult cats. Twenty seven male or female cats with mean weight of 4.19 &#177; 0.83kg and mean age of 9.44 &#177; 5.35 years were used and distributed in an unbalanced randomized block design (age), consisting of three experimental treatments, DC (control diet), LSC 0.3 (control diet with 0.3% yeast with active metabolites) and LSC 0.6 (control diet with 0.6% yeast with active metabolites). The results were analyzed using the computer program Statistical Analysis System (SAS Institute Inc., 2004), with significance level of p&lt;0.05 and the averages compared by Tukey test. The inclusion of the additive only changed the apparent digestibility of crude fiber and mineral content (p&lt;0.05). Regarding the fermentation products and microbiota of feces, there was a reduction in lactic acid (p&#61;0,0040) and Clostridium perfringens (p&#61;0,0226) with inclusion of prebiotic and decreased of isovalerate (p&#61;0,0144) in the LSC 0.3 treatment. It can be concluded that the additive, in the levels of inclusion assessed, seems to have prebiotic potential on fecal fermentation products and microbiota