No description available.

Le développement dentaire est orchestré par une série de signalisations inductives réciproques entre l'épithélium dentaire et le mésenchyme, qui conduit à la formation de la dentine et de l'émail. EMMPRIN/CD147 est un INducteur des MetalloPRoteinases de la Matrice Extracellulaire (MMPs) qui régule les interactions épithélio-mésenchymateuses dans le cancer et d'autres processus pathologiques et est exprimé lors du développement dentaire. Ainsi, nous avons utilisé des souris KO pour EMMPRIN pour déterminer le rôle d'EMMPRIN dans la formation des tissus dentaires. Nous avons démontré que l’absence d’EMMPRIN conduisait dans le germe dentaire à une diminution de l’expression de MMP-3 et de MMP-20, à un retard de la dégradation de la membrane basale, à un retard de la formation de l’émail bien visible dans l'incisive à croissance continue, à une diminution du volume et de l'épaisseur d'émail, mais à une maturation amélaire normale. Ces résultats indiquent qu'EMMPRIN est impliqué dans le dialogue épithélio-mésenchymateuse pendant le développement dentaire, principalement par la régulation de l'expression de certaines MMPS. Nous avons ensuite essayé d'évaluer le rôle potentiel d'EMMPRIN dans le processus de réparation dentaire en comparant la cicatrisation de blessures pulpaires des souris KO pour EMMPRIN à des souris WT. Enfin, dans un souci de transfert vers la clinique, nous avons évalué la capacité d’extraits de pépin de raisin (connu pour être des inhibiteurs naturels de MMPs) à empêcher la dégradation de la matrice dentinaire humaine déminéralisée et traitée par MMP-3. / Tooth development is regulated by a series of reciprocal inductive signalings between the dental epithelium and mesenchyme, which culminates with the formation of dentin and enamel. EMMPRIN/CD147 is an Extracellular Matrix MetalloPRoteinase (MMP) INducer that mediates epithelial-mesenchymal interactions in cancer and other pathological processes and is expressed in developing teeth. Here we used EMMPRIN knockout (KO) mice to determine the functional role of EMMPRIN on dental tissues formation. We demonstrated that EMMPRIN deficiency results in decreased in MMP-3 and MMP-20 expressions, delayed in basement membrane degradation in tooth germ, delayed in enamel formation well distinguishable in incisor, and in decreased enamel volume and thickness but normal maturation. These results indicate that EMMPRIN is involved in the epithelial-mesenchymal cross-talk during tooth development by regulating the expression of MMPs. Then we tried to investigate the potential role of EMMPRIN in the pulp dentin repair process by comparing the healing of injured pulps of EMMPRIN KO and WT mice. Finally, we evaluated the capacity of grape-seed extracts (known to be natural inhibitors of MMPs and used in new daily mouthrinse) to prevent the degradation of human demineralized dentin matrix by MMP-3.

Os gânglios da raiz dorsal (GRD) armazenam neurônios TrkA-positivos. A percepção e transmissão de estímulos por estes neurônios dependem de uma neuritogênese adequada. Miosina (MioVa) é expressa no tecido nervoso e está presente em neuritos, corpo celular e cone de crescimento. Caracterizamos o padrão de expressão de MioVa na neuritogênese de células TrkA-positivas do GRD de galinha in vivo e in vitro. In vivo, MioVa é expressa em células que não começaram a emitir neuritos em HH25, e sua expressão persiste por toda neuritogênese. In vitro, é recrutada para o processo de re-emissão de neuritos de neurônios TrkA positivos na presença de NGF, sendo expressa em neuritos em diferentes estádios de neo-neuritogênese. Nos ensaios funcionais, observamos que a superexpressão do domínio globular de MioVa em culturas de GRD com 10 ou 100ng/ml de NGF reduz a população de células com neuritos longos e aumenta a população de células com neuritos curtos ou sem neuritos. Em conjunto, estes dados sugerem que a MioVa é importante para o estabelecimento de neuritos nociceptores. / The dorsal root ganglia (DRG) harbor the TrkA-positive neurons. The stimuli perception and transmission by these neurons depend on a proper neuritogenesis. Myosin (MyoVa) is widely expressed in nervous tissue and is present in neurites, cell body and growth cone. Here, we characterized the MyoVa expression pattern in chicken DRG TrkA-positive cells neuritogenesis, in vivo and in vitro. In vivo, at stage HH25, MyoVa was present both in cells with and without neurites and its expression persists throughout neuritogenesis. In vitro, it is recruited for the regeneration process and TrkA-positive neurons neurites re-emission in the presence of NGF, being expressed in neurites at different stages of neo-neuritogenesis. In functional assays, we observed that MyoVa globular tail overexpression in GRD cultures maintained with 10 or 100ng/ml NGF reduces the number of neurons with long neurites and increased the number of neurons with short neurites or no neurites. Taken together, these results suggest that Myosin Va is important for the establishment of nociceptor neurites.

O ciclo de vida de Dictyostelium discoideum é composto de duas fases independentes. Durante o crescimento vegetativo, as amebas crescem isoladas até que a fonte de nutrientes seja esgotada. A carência nutricional induz sua entrada num processo de desenvolvimento, que inclui a parada do crescimento, a agregação das células e a formação de um organismo multicelular onde as células se diferenciam em esporos que sobrevivem as condições desfavoráveis. A proteína quinase YakA é requerida para a transição entre o crescimento e o desenvolvimento. YakA regula os níveis da PKA. Mutantes yakA- apresentam o crescimento acelerado, são deficientes no processo de agregação e são hiper-sensíveis a estresse oxidativo e nitrosoativo. Uma mutação em um segundo sítio em keaA, suprime a morte induzida por SNP (um gerador de óxido nítrico) no mutante yakA-. O papel de keaA foi determinado em resposta a estresse oxidativo, nitrosoativo e carênica nutricional. O gene keaA é necessário para o crescimento e desenvolvimento. Uma mutação em keaA confere resistência a estresse nitrosoativoloxidativo confirmando que uma mutação em keaA confere resistência a estresse. Um segundo supressor da morte induzida por SNP no mutante yakA- foi isolado pela mesma técnica de REMI e identificado como pkaC um regulador da resposta a estresse. YakA e PKA integradam a resposta a vários estresse em Dictyostelium. Os resultados indicam que a yakA regula a parada do ciclo celular em resposta a estresses através da modulação de keaA. keaA regula, por sua vez, a expressão da pkaC, um regulador chave da produção de cAMP e do processo de desenvolvimento. A interação gênica entre estes elementos é complexa e deve ser ajustada para permitir que as células sobrevivam a mudanças ambientais encontradas durante o seu ciclo de vida. / Dictyostelium discoideum\'s life cycle is composed of two phases. During the vegetative phase, amoebae grow as single cells until the nutrients are depleted. Starvation induces a developmental program where isolated amoebae adopt a multicellular mode of living and differentiate into spores to survive the harsh conditions. The protein Kinase YakA is required for the growth to development transition. YakA regulates the leveis of PKA. yakA null cells have a faster cell cycle, are aggregation deficient and are hypersensitive to nitrosoative/oxidative stress. A second-site mutation in keaA, supresses the death induced by SNP, a generator of nitric oxide. The role for keaA has been determined in response to oxidative, nitrosoative and nutrient starvation stresses. keaA is required for proper growth and development. The keaA- cells are more resistant to nitrosoative and oxidative stress confirming that a mutation in keaA confers stress resistance. A second supressor of the death induced by SNP in the mutant yakA- was isolated with REMI and identified pkaC as a regulator of the nitrosoative stress response. YakA and PKA may integrate the responses to several stresses in Dictyostelium. The results indicate that yakA regulates the cell cycle arrest in response to stress through the modulation of keaA. KeaA regulates the expression of pkaC, a key regulator of cAMP prodution and development. Genetic interactions among these elements is complex and must be finely tuned in the many environmental changes cells endure during the life cycle.

Neisseria meningitidis, a commensal β-proteobacterium residing exclusively in the human nasopharynx, is a leading cause of sepsis and epidemic meningitis worldwide. While comparative genome analysis was able to define hyperinvasive lineages that are responsible for most of the cases of invasive meningococcal disease (IMD), the genetic basis of their virulence remains unclear. Recent studies demonstrate that the type II C CRISPR/Cas system of meningococci is associated with carriage and less invasive lineages. CRISPR/Cas, an adaptive defence system against foreign DNA, was shown to be involved in gene regulation in Francisella novicida. This study shows that knockout strains of N. meningitidis lacking the Cas9 protein are impaired in the adhesion to human nasopharyngeal cells in a strain-dependant manner, which constitutes a central step in the pathogenesis of IMD. Consequently, this study indicates that the meningococcal CRISPR/Cas system fulfils functions beyond the defence of foreign DNA and is involved in the regulation of meningococcal virulence. / Neisseria meningitidis, ein ß-Proteobakterium, welches als Kommensale ausschließlich den humanen Nasopharynx besiedelt, ist ein weltweit führender Verursacher von Sepsis und epidemischer Meningitis. Auch wenn mittels vergleichender Genomanalysen hyperinvasive Stämme definiert werden konnten, welche für die meisten Fälle von invasiven Meningokokkenerkrankungen verantwortlich sind, bleibt die genetische Grundlage ihrer Virulenz ungeklärt. In vorangegangenen Studien konnte gezeigt werden, dass das Typ II-C CRISPR/Cas-System der Meningokokken assoziiert ist mit Trägerstämmen. CRISPR/Cas ist ein adaptives Verteidigungssystem der Bakterien gegen fremde DNA, das darüber hinaus Aufgaben in der Genregulation von Francisella novicida erfüllt. Diese Arbeit zeigt, dass knockout Stämme von N. meningitidis, denen das Cas9-Protein fehlt, in Abhängigkeit von ihrem genetischen Hintergrund die Fähigkeit verlieren an Zellen des menschlichen Nasopharynx zu adhärieren. Die Adhäsion an den Wirtszellen stellt einen zentralen Schritt in der Pathogenese der invasiven Meningokokkenerkrankungen dar. Die Ergebnisse dieser Arbeit deuten darauf hin, dass das CRISPR/Cas-System in Meningokokken neben seiner Funktion als bakterielles Immunsystem an der Regulation der bakteriellen Virulenz beteiligt sein könnte.

Intercellular communication is crucial during animal development and tissue maintenance to ensure that correct patterns of cell types are generated to meet the needs of the organism. During lateral specification, intercellular communication resolves cell fate decisions between equipotent cells, creating fate patterns that are biased by external factors in some contexts, but appear stochastic in others. The Notch signaling pathway mediates lateral specification; small differences in Notch activity are amplified by regulatory feedback loops to robustly differentiate cell fates based on relative levels of Notch activity. It is often unclear how noise in the environment is processed by cells to generate differences in Notch activity that can be translated into stochastic, but robust, cell fate outcomes. The nematode Caenorhabditis elegans contains a simple, Notch-mediated, stochastic lateral specification event; a small, random difference in Notch activity between two cells, the α cells, is amplified so that one α cell assumes Anchor Cell (AC) fate and the other assumes Ventral Uterine precursor cell (VU) fate. Two upstream factors bias the outcome of the AC/VU decision depending on the length of the time interval between the births of the α cells: the relative birth order of the α cells and the onset of expression of the transcription factor HLH-2. It is unknown how these factors create a difference in the relative Notch activity level between the two α cells, and limitations of existing Notch reporters have prevented the direct observation of Notch activity levels required for determining the relationships. In this thesis, I describe a genetically-encoded Sensor Able to detect Lateral Signaling Activity, or SALSA, which uses changes in nuclear Red:Green fluorescence to indicate Notch activity. I demonstrated that SALSA captures expected Notch activity patterns in four paradigms in C. elegans, encompassing both Notch homologs, and reports low levels of Notch activity that were predicted but undetectable with other Notch activity reporters. Using SALSA, I showed that the first-born α cell is able to develop an advantage in Notch activity prior to the birth of the other α cell when the time interval between α cell births is long, but the α cell that gains the Notch activity advantage is random with respect to birth order when the time interval between α cell births is short. These results agree with the current model of the AC/VU decision. I also describe Flexon, a method for the conditional activation of strong gene expression in specific cell lineages using a lox-stop-lox cassette encoded into an artificial exon flanked by two artificial introns. A flexon can be placed into the coding region of a gene to prevent translation of a functional gene product; gene expression is restored to specific lineages through expression of a tissue-specific Cre driver that excises the flexon. I show that flexon can be used to make bright, long-lasting, tissue-specific fluorescent lineage markers. I also showed that the flexon could be used for conditional activation of an endogenous gene by inserting a flexon into rde-1 to severely reduce RNAi activity and restore gene function in specific tissues using Cre drivers.

No description available.

Hepatitis B virus (HBV) is a leading cause of liver disease. Its success as a human pathogen is related to the immense production of subviral envelope particles (SVPs) contributing to viral persistence by interfering with immune functions. To explore cellular pathways involved in SVP formation and egress, we investigated host–pathogen interactions. Yeast-based proteomics revealed Sec24A, a component of the coat protein complex II (COPII), as an interaction partner of the HBV envelope S domain. To understand how HBV co-opts COPII as a proviral machinery, we studied roles of key Sec proteins in HBV-expressing liver cells. Silencing of Sar1, Sec23, and Sec24, which promote COPII assembly concomitant with cargo loading, strongly diminished endoplasmic reticulum (ER) envelope export and SVP secretion. By analysing Sec paralog specificities, we unexpectedly found that the HBV envelope is a selective interaction partner of Sec24A and Sec23B whose functions could not be substituted by their related isoforms. In support, we found that HBV replication upregulated Sec24A and Sec23B transcription. Furthermore, HBV encountered the Sec24A/Sec23B complex via an interaction that involved the N-terminal half of Sec24A and a di-arginine motif of its S domain, mirroring a novel ER export code. Accordingly, an interference with the COPII/HBV cross-talk might display a tool to effectively inhibit SVP release.

This dissertation introduces assembly of spherical particles as a novel topography-based anti-biofouling coating. It also provides new insights on the effects of surface topography, especially local curvature, on cell–surface and cell–cell interactions during the evolution of biofilms. I investigated the adhesion, colonization, and biofilm formation of the opportunistic human pathogen Pseudomonas aeruginosa on a solid coated in close-packed spheres of polystyrene, using flat polystyrene sheets as a control. The results show that, whereas flat sheets are covered in large clusters after one day, a close-packed layer of 630–1550 nm monodisperse spheres prevents cluster formation. Moreover, the film of spheres reduces the density of P. aeruginosa adhered to the solid by 80%. Our data show that when P. aeruginosa adheres to the spheres, the distribution is not random. For 630 nm and larger particles, P. aeruginosa tends to position its body in the confined spaces between particles. After two days, 3D biofilm structures cover much of the flat polystyrene, whereas 3D biofilms rarely occur on a solid with a colloidal crystal coating of 1550 nm spheres. On 450 nm colloidal crystals, the bacterial growth was intermediate between the flat and 1550 nm spheres. The initial preference for P. aeruginosa to adhere to confined spaces is maintained on the second day, even when the cells form clusters: the cells remain in the confined spaces to form non-touching clusters. When the cells do touch, the contact is usually the pole, not the sides of the bacteria. The observations are rationalized based on the potential gains and costs associated with cell-sphere and cell-cell contacts. I concluded that the anti-biofilm property of the colloidal crystals is correlated with the ability to arrange the individual cells. I showed that a colloidal crystal coating delays P. aeruginosa cluster formation on a medical-grade stainless-steel needle. This suggests that a colloidal crystal approach to biofilm inhibition might be applicable to other materials and geometries. The results presented in appendix 1 suggest that colloidal crystals can also delay adhesion of Methicillin resistant staphylococcus aureus (MRSA) while it supports selective adhesion of this bacterium to the confined spaces. / Ph. D.

The rapid identification of protein-protein interactions has been significantly enabled by mass spectrometry (MS) proteomics-based methods, including affinity purification-MS, crosslinking-MS, and proximity-labeling proteomics. While these methods can reveal networks of interacting proteins, they cannot reveal how specific protein-protein interactions alter cell signaling or protein function. For instance, when two proteins interact, there can be emergent signaling processes driven purely by the individual activities of those proteins being co-localized. Alternatively, protein-protein interactions can allosterically regulate function, enhancing or suppressing activity in response to binding. In this work, we investigate the interaction between the tyrosine phosphatase PTP1B and the adaptor protein Grb2, which have been annotated as binding partners in a number of proteomics studies. This interaction has been postulated to co-localize PTP1B with its substrate IRS-1 by forming a ternary complex, thereby enhancing the dephosphorylation of IRS-1 to suppress insulin signaling. Here, we report that Grb2 binding to PTP1B also allosterically enhances PTP1B catalytic activity. We show that this interaction is dependent on the proline-rich region of PTP1B, which interacts with the C-terminal SH3 domain of Grb2. Using NMR spectroscopy and hydrogen-deuterium exchange mass spectrometry (HDX-MS) we show that Grb2 binding alters PTP1B structure and/or dynamics. Finally, we use MS proteomics to identify other interactors of the PTP1B proline-rich region that may also regulate PTP1B function similarly to Grb2. This work presents one of the first examples of a protein allosterically regulating the enzymatic activity of PTP1B and lays the foundation for discovering new mechanisms of PTP1B regulation in cell signaling.