The goal of this research is to investigate the role of the slr1098 gene in the cyanobacterium Synechocystis sp. PCC 6803, a gene with similarity to cpcE which encodes a subunit of an enzyme involved in bilin attachment to phycocyanin. This protein is hypothesized to be involved in oligomerization of phycocyanin due to previous results showing the mutant made shorter phycocyanin rods. The recombinant Slr1098 protein was produced and purified from E. coli cells. Binding assays showed interaction between Slr1098 and both apo- and holo-phycocyanin, but not to apo-allophycocyanin. Slr1098 blocked bilin addition at Cys-82 on CpcB by the CpcS/CpcU bilin lyase. Size exclusion chromatography and sucrose density gradient analysis of complexes formed suggest that Slr1098 strongly interacts with all intermediate forms of phycocyanin and may be an important checkpoint in the biosynthesis and oligomerization of this protein, but that by itself, Slr1098 does not increase oligomerization of phycocyanin.

Structural evolution and its effect on optical absorption/emission behavior of fluorene-thiophene conjugated alternate copolymers and naphthalene-thiophene conjugated alternate copolymers and polystyrene-poly-3octylthiophene-polystyrene triblock copolymer of upon isothermal heat treatment at elevated temperatures, and the well £k-£k stack at interchain species (ordered aggregates) be formed in dilute solutions and its effect the UV-vis and PL spectra. These conjugated polymer with mono- or disubstituted with alkyl side chain and with alkyl or alkoxyl flexible side-chains. This studied by means of a combination of polarized light microscopy, x-ray diffraction, ultraviolet-visible spectroscopy, light scattering spectroscopy and photoluminescence spectroscopy. According to the results of the experiment, the fluorene-based polymer can be observed emission from order aggregate in the solution state, but not found in naphthalene-based and triblock copolymer.

Optical modulation has shown the selective and sensitive signal improvement in high background systems in cell imaging; however, cell applications are still limited due to biocompatibility and delivery issues. Fluorescent proteins have a variety of optically accessible states that make them ideal candidates for investigation of modulatability. Combining the optical modulation technique with the biocompatibility of fluorescent proteins is a major advance. This work focuses on evaluation fluorescent proteins and their optical states for modulation, as well demonstrations of cellular imaging. Herein, we evaluate a green fluorescent protein with interesting photophysical properties favorable for optical modulation. Positive for optical modulation, further investigation of the state dictating modulation reveals the presence of a slow component on the order of milliseconds. To better understand the mechanism responsible modulation, blue fluorescent proteins are created to modify the chromophore environment. Extraction of photophysics confirm the alteration timescales of the modulated state. Motivated by the ability to improve imaging and decode hidden dynamics, demodulation of these proteins demonstrates the selective recovery of signal in the presence of high cellular background. The continued investigation of several other fluorescent proteins identifies modulatable proteins across the visible wavelength region. Additionally, solvent environmental factors show varying timescales which, when combined with mutagenesis, suggest a cis/trans isomerization coupled with a proton transfer. This information of the properties dictating optical modulation allows for the engineering of improved modulatable proteins to study cellular dynamics.

No description available.

The goal of this research was to develop an understanding of the impact of component modifications on spectroscopic properties, DNA interaction, and bioactivity of tridentate, terpyridine containing ruthenium-based chromophores and chromophore coupled cisplatin analogs. The coupling of a light absorbing unit to a bioactive site offers the potential for developing supramolecules with multifunctional interactions with DNA and other biomolecules. A series of supramolecular complexes of the form [(TL)RuCl(dpp)](PF₆) and [(TL)RuCl(BL)PtCl₂](PF₆) with the BL (bridging ligand) = 2,3-bis(2-pyridyl)pyrazine (dpp) and varying TL (terminal ligand) (tpy = 2,2'':6'',2''-terpyridine, MePhtpy = 4''-(4-methylphenyl)- 2,2'':6'',2''- terpyridine, or tBu3tpy = 4,4'',4''-tri-tert-butyl-2,2'':6'',2''-terpyridine) have been designed and developed. The investigations described in this thesis were focused on the design and development of multifunctional supramolecules with improved DNA interaction and antibacterial properties. The impact of component modifications on photophysical and biological properties of the designed the supramolecular complexes was investigated. A series of supramolecular complexes of the type, [(TL)RuCl(dpp)](PF₆) and [(TL)RuCl(dpp)PtCl₂](PF₆), have been synthesized using a building block approach. Electronic absorption spectroscopy of these types of complexes displayed intense ligand-based transitions in the UV region and metal to ligand charge transfer (MLCT) transitions in the visible region. The Ru to dpp MLCT transitions in RuIIPtII bimetallic complexes were found to be red-shifted relative to the monometallic synthons. The MLCT transitions for [(TL)RuCl(dpp)](PF₆) and [(TL)RuCl(dpp)PtCl₂](PF₆) were centered at ca. 520 and 545 nm, in CH₃CN respectively. The RuIIPtII bimetallic complexes with (TL = tpy, MePhtpy, and tBu3tpy) displayed reversible RuII/III couples at 1.10, 1.10, and 1.01 V vs. Ag/AgCl, respectively. The tpy0/- reductions occurred for TL = tpy, MePhtpy, and tBu3tpy at -1.43, -1.44, and -1.59 V vs. Ag/AgCl, respectively. The RuIIPtII complexes displayed a more positive potential for the dpp0/- couples (-0.50 -0.55, -0.59 V for tpy, MePhtpy, and tBu3tpy, repectively) relative to their monometallic synthons (-1.15, -1.16, and -1.22 V), consistent with the coordination of electron deficient Pt(II) metal center. This research also presents first extensive DNA photocleavage studies of these relatively unexplored tridentate, tpy-containing chromophores. The DNA binding and photocleavage properties of a series of homoleptic and heteroleptic chromophores and RuIIPtII bimetallic complexes were investigated using agarose gel electrophoresis and equilibrium dialysis experiments. The heteroleptic complexes, [(MePhtpy)RuCl(dpp)](PF₆), [(tpy)RuCl(dpp)](PF6), and [(tBu3tpy)RuCl(dpp)](PF6), were found to photocleave DNA more efficiently than homoleptic complexes, [Ru(MePhtpy)2]2+, [Ru(tpy)2]2+, and [Ru(tBu₃tpy)2]2+, in the presence of oxygen. Coupling of [(TL)RuCl(BL)] subunit to a cis-PtIICl2 site provides for the application of typically shorter lived RuII(tpy) based chromophores in DNA photocleavage. The [(TL)RuCl(dpp)PtCl₂]+, complexes displayed covalent binding to DNA and photocleavage upon irradiation with visible light modulated by TL identity. The impact of component modifications on antibacterial properties of the designed molecules was explored for the first time. Both the RuIIPtII bimetallic complexes and their monometallic analogs displayed antibacterial properties. [(MePhtpy)RuCl(dpp)](PF₆) was found to be the most efficient antibacterial agent in the series of monometallic and RuIIPtII bimetallic complexes, displaying cell growth inhibition at 0.05 mM concentration compared to 0.1 mM concentration of [(MePhtpy)RuCl(dpp)PtCl₂](PF₆) needed to display the similar effect. A direct correlation was found to exist between the DNA interaction and bactericidal properties of the designed supramolecules. The effects of light on antibacterial properties of [(MePhtpy)RuCl(dpp)](PF₆) were also briefly examined. This complex represents the first inorganic chromophore-based photodynamic antibacterial agent. / Ph. D.

Le 3D-SiP, 3D-System in package, est une branche de la microélectronique visant à intégrer de manière hétérogène divers composants pour obtenir des microsystèmes compacts, pensants et communiquants. Cette thèse a pour objet l'étude de deux procédés laser pour fabriquer des microsystèmes 3D-SiP sur support flexibles. On étudie dans un premier temps l'ablation laser de polymère pour réaliser des cavités dans lesquelles des composants microélectroniques peuvent être placés. On utilise du poly(méthacrylate de méthyle) (PMMA) dopé et greffé avec du pyrène, chromophore absorbant dans l'UV et on montre que, bien que le greffage du chromophore sur les chaînes du polymère améliore l'homogénéité, la qualité de l'ablation est suffisante lorsque le pyrène est simplement dispersé. On modifie également le PMMA avec du N3 pour le rendre réticulable et on constate l'apparition de structures surfaciques périodiques après ablation, dont on explique les mécanismes de formations probables. Dans un second temps, on étudie le dépôt de lignes conductrices par LIFT, Laser-Induced Forward Transfer, technique permettant de transférer par laser un matériau préalablement déposé sur un substrat donneur transparent. On utilise une encre contant des nanoparticules d'argent fusionnant après recuit pour imprimer goutte après goutte des lignes conductrices. On étudie l'éjection et le dépôt d'encre à grande vitesse (0,5 MHz) et on obtient pour la première fois des images d'éjections de plusieurs jets d'encre successifs. On démontre la possibilité d'imprimer des lignes conductrices à la vitesse de 4,3 m/s et on discute les critères clefs pour le contrôle de ce procédé. / 3D-System in package (3D-SiP) is a branch of microelectronics that aims at integrating several heterogeneous components into the same package, thus forming a compact device able to communicate and process data. The goal of this thesis is to study two laser processes to build 3D-SiP microsystems on flexible substrates. In a first part, we study the laser ablation of cavities in polymer in which microchips can be inserted. We use poly(methyl methacrylate) (PMMA) doped and grafted with pyrene, a chromophore which absorbs in the UV range. We show that grafting the pyrene on the polymer side-chains increases the homogeneity but that the quality of ablation is sufficient when the pyrene is simply dispersed in the matrix. We also modify the PMMA with N3 to make it cross-linkable and we observe the formation of laser-induced periodic surface structures upon laser irradiation. We discuss the mechanism most likely to explain their formation. On a second part, we use the LIFT (laser-induced forward transfer) technique, which uses a laser pulse to print a material deposited on a transparent donnor substrate. Using a silver nanoparticles ink, we deposit droplets that coalesce and form lines. We study the ejection and printing at high speed (0,5 MHz) and we visualize for the first time the ejection of several succesive jets. We show that it is possible to print electrical connections at 4.3 m/s and we discuss the criteria to control the process.

Des supramolécules basées sur la reconnaissance de viologènes par des curcubit[n]urils (CB[n]) ont été étudiées. Les systèmes développées incluent des [3]-, [4]- et [7]pseudorotaxanes, composés de multimères à base de viologène et de CB[7] ou CB[8]. L’étude physicochimique a montré que ces supramolécules sont interconverties électrochimiquement entre un état complexé, défini par les pseudorotaxanes, et un état dissocié comprenant chacun des partenaires. Le désassemblage résulte d’une pimérisation intra/intermoléculaire entre radicaux viologènes.L’étude physicochimique de complexes pentacoordinés basés sur la reconnaissance d’azo-aryl-imidazoles par une porphyrine à anse phénanthroline a été menée; l’objectif étant d’utiliser les propriétés d’isomérisation photoinduite trans-cis d’azo-chromophores pour dissocier ces complexes. Les complexes initiaux sont alors régénérés par relaxation thermique. La stabilité et les propriétés cinétiques des complexes pentacoordinés ont été évaluées. / Supramolecules based on the recognition of redox-active bipyridiniums by cucurbit[n]uril (CB[n]) have been studied. The investigated systems include a [3]-, a [4]- and a [7]pseudorotaxane, each of them composed of a multimeric viologen-based thread molecule and CB[7] or CB[8]. The physicochemical approach emphasized that these systems can be electrochemically switched between a complexed state, defined by the pseudorotaxanes, and an uncomplexed state comprising their components. The disassembly results from intra/intermolecular pimerization of the viologen radicals.A physicochemical approach of pentacoordinated complexes of a phen-strapped porphyrin with azo-arylimidazoles has been undertaken with the aim to use the photoinduced trans-cis isomerization properties of azo-chromophores to dissociate the complexes. Thermal equilibration reinstates the thermodynamically favoured complexes. The strength and the kinetic properties of these pentacoordinated species have been evaluated.

Depuis les années 60, la génération d’acide fort de Brönsted par un processus photoinduit à un photon est utilisée dans des nombreux domaines de recherche de plus en plus nombreux. Cependant, de tels acides peuvent-être facilement obtenus par voie biphotonique ce qui présente de nombreux avantages comme par exemple : une meilleure réactivité via une excitation direct du photoacide, l’utilisation possible d’une atmosphère non contrôlée, l’utilisation de microlasers à impulsions sub-nanosecondes peu couteux, mais aussi l’augmentation de la résolution spatiale des micro-objets 3D fabriqués. La génération d’acide se fait généralement par transfert d’électron entre un sensibilisateur et un générateur de photoacide (PAG). Une approche prometteuse consiste à associer, sur une même molécule, un PAG et un chromophore actif à deux photons. Il a donc semblé intéressant de développer de nouveaux PAG capables, par excitation biphotonique, d’amorcer directement la photopolymérisation. Nous avons choisi de préparer des systèmes capto-datifs stilbéniques, de nature neutre ou ionique. Aussi, une série de PAG neutres substitués par des groupements diphénylamino- donneur et iminosulfonates -cyanés accepteurs a été synthétisée. Nous avons également commencé, mais non achevé, la synthèse de PAG neutres portant des groupements iminosulfonates -trifluorométhylés. Puis, nous avons cherché à synthétiser des PAG ioniques substitués soit par un groupement éthoxy soit par un groupement diphénylamino soit par un groupement julolidine. Néanmoins, la dernière étape de la synthèse est pour l’instant un verrou synthétique. / Since the 60’s, the generation of strong Brönsted acids by a one-proton photoinduced process has been used in more and more research areas. Recently, it has been shown, that such acids are easily obtained by a two-photon process. This offers many advantages such as: i) a better reactivity owing to a direct excitation of the photoacid, ii) the possible use of a non-controlled atmosphere, iii) the use of inexpensive microlasers with sub-nanosecond impulsions, iv) the increase of spatial resolution in 3D microfabrication. The acid generation generally proceeds through a photo-induced electro transfer from an excited sensitizer to the photoacid generator (PAG). A promising approach should be the introduction on a single molecule of both a PAG and a two-photon active chromophore moiety. In this context, we have developed new PAGs able to initiate photopolymerisation through a two-photon activation process. The syntheses were focused on stilbenic push-pull systems having either a neutral or an ionic nature. A series of neutral PAGs bearing a diphenylamino donor group and an α-cyano iminosulfonate acceptor moiety has been synthesized. The preparation of neutral PAGs bearing iminosulfonate α-trifluoromethylated groups were not yet completed. The syntheses of ionic PAGs substituted by an ethoxy group, a diphenylamino group or a julolidine one, could not be completed either.

New methodologies for the efficient syntheses of 4,4-difluoro-4-bora-3a,4adiaza- s-indacenes (BODIPYs) and rosamines were developed. A serendipitous discovery led to a new reaction which afforded BODIPYs in high yields. Systematic studies of the kinetics and mechanisms of the new reaction were performed. A series of BODIPYs were successfully prepared using the new approach. A simple and efficient synthesis of rosamines with cyclic-amine substituents was devised. These new rosamines showed interesting anti-tumor activities. Several types of novel fluorescent compounds were prepared. Highly fluorescent GFP-chromophore analogs were designed and synthesized. The correlation between the optical properties and the structures was investigated. New pyronin dyes with mesoheteroatom substituents were efficiently prepared. The fluorescence properties of these compounds were highly dependent on the nature of the meso-substituents. A set of BODIPY dyes that fluoresce brightly above 600 nm were made. They were then used as acceptors to prepare water-soluble through-bond energy transfer cassettes. All the cassettes had complete energy transfer and high quantum yields in MeOH. A few also had good fluorescence properties in aqueous media and even on proteins. The through-bond energy transfer cassettes were used to monitor protein-protein interactions. In order to test our hypothesis, an artificial protein interaction system was built by utilizing the biotin/(strept)avidin interactions. Thus Atto425-BSA-biotin, streptavidin-cassette1 and avidin-cassette2 were prepared. The interactions between Atto425-BSA-biotin and cassette labeled (strept)avidin were successfully detected in vitro and in living cells by fluorescence techniques.

Chapter 1: Reaction of benzoaldehyde with wittig agents or isophone to build up conjugate carbon chain, then combined with electron acceptor to furnished the chromophores. The charge-transfer chromophores, which have the first molecular hyperpolarizability