A revascularização cardíaca utilizando a ponte de safena é um procedimento bastante utilizado para restabelecer o fluxo coronariano. Apesar do sucesso deste procedimento, a patência deste enxerto pode chegar a menos de 50% em 10 anos. Atribui-se parte deste insucesso a variações no processo adaptativo à nova condição hemodinâmica, onde o shear stress e o estiramento aumentados podem estar interferindo na função endotelial e vascular. Este processo envolve a participação de diversas proteínas e o estudo de como elas participam conjuntamente é uma importante abordagem para entender as alterações fisiológicas e patológicas que ocorrem no enxerto vascular. Neste trabalho, tecnologias proteômicas, gel 2-D e ICAT, foram utilizadas para identificar as proteínas que são modificadas nas fases precoces da arterialização do enxerto venoso. Foi utilizado um sistema ex vivo de perfusão controlada, desenvolvido em nosso laboratório, onde a veia safena humana foi cultivada tanto em regime hemodinâmico venoso (5 mL/min) e arterial (50 mL/min, 80 mmHg) por 24 horas. Dentre as proteínas identificadas, a maioria apresenta funções estruturais como, por exemplo, -actina de músculo liso, CRP1, colágeno VI, tropomiosina, miosina, desmina e vimentina. Para avaliação funcional foram selecionadas a -SMA e a CRP. A -SMA mostrou-se diminuída nas fases mais precoces da arterialização venosa, com quase desaparecimento após 3 dias da cirurgia, seguido de um aumento nos períodos subseqüentes. A CRP3 mostrou-se com expressão predominantemente arterial tanto em amostra humana como de rato. A arterialização de segmentos venosos induziu a expressão da CRP3, sendo dependente do aumento do estiramento (stretch) nas células musculares lisas e não do aumento do shear stress na superfície endotelial. Coletivamente, neste trabalho caracterizamos duas proteínas que foram modificadas durante o processo de arterialização e/ou adaptação da veia à condição hemodinâmica arterial. As proteínas identificadas contribuirão para o melhor entendimento do processo de arterialização venosa e poderão ser testadas como novos alvos terapêuticos para melhorar a patência destes enxertos / Coronary artery bypass surgery by saphenous vein graft is still widely used to revascularization of ischemic heart. Despite the success of this procedure, about 50% occlude after 5-10 years. The vein graft is subjected to increased tensile stress and the adaptive vein response to the arterial hemodynamic condition may predispose to bypass occlusion. Several proteins are modulated during arterialization, the understanding of the molecular changes of this process may be useful to new therapeutics approaches development attempting to increase vein graft patency. In this work, proteomics plataform, gel 2-D and ICAT, were used to identify the proteins that are modified in the early stages of vein graft rterialization. Human saphenous vein were cultured in an ex vivo flow through system in both venous (5 ml / min) and arterial (50 ml / min, 80 mm Hg) hemodymanic conditions for 24 hours. The identified proteins were related to cell structural function, such as -SMA, CRP1, collagen VI, tropomyosin, myosin, desmin and vimentin. To functional characterization, -SMA and CRP were selected. In rat vein arterialization model, - SMA showed to be decreased during the early stages of arterialization and almost disappeared after 3 days of surgery. Later on, -SMA-positive cells increase reaching similar expression levels of normal jugular vein. The expressiom of CRP3 showed to be predominantly to arterial beds both in human and rat. When vein segment were submitted to arterial hemodynamic condition, it was observed a significant induction of CRP3 expression. Interestingly, the increase of CRP3 is dependent of stretch stimulus in smooth muscle cells while shear stress did not modify its expression in endothelial cells. Collectively, we successfully identified proteins differentially expressed during the vein arterialization by using proteomic technique. -SMA and CRP3 were modified in vein segments exposed to arterial hemodynamic condition and efficiently discriminate smooth muscle cell phenotype. The identified proteins will contribute to the better understanding of the venous arterialization process and may be tested as new therapeutic targets for improving the patency these grafts

Asymmetric cell divisions constitute a basic foundation of animal development, providing a mechanism for placing specific cell types at defined positions in a developing organism. In a 4-cell stage embryo in Caenorhabditis elegansthe EMS cell divides asymmetrically to specify intestinal cells, which requires a polarizing signal from the neighboring P2 cell. Here we describe how the extracellular signal from P2 is transmitted from the membrane to the nucleus during asymmetric EMS cell division, and present the identification of additional components in the pathways that accomplish this signaling. P2/EMS signaling involves multiple inputs, which impinge on the Wnt, MAPK-like, and Src pathways. Transcriptional outputs downstream of these pathways depend on a homolog of β-catenin, WRM-1. Here we analyze the regulation of WRM-1, and show that the MAPK-like pathway maintains WRM-1 at the membrane, while its release and nuclear translocation depend on Wnt/Src signaling and sequential phosphorylation events by the major cell-cycle regulator CDK-1 and by the membrane-bound GSK-3 during EMS cell division. Our results provide novel mechanistic insights into how the signaling events at the cortex are coupled to the asymmetric EMS cell division through WRM-1. To identify additional regulators in the pathways governing gut specification, we performed suppressor genetic screens using temperature-sensitive alleles of the gutless mutant mom-2/Wnt, and extra-gut mutant cks-1. Five intragenic suppressors and three semi-dominant suppressors were isolated in mom-2 suppressor screens. One extragenic suppressor was mapped to the locus ifg-1, eukaryotic translation initiation factor eIF4G. From the suppressor screen using cks-1(ne549), an allele of the self-cleaving nucleopore protein npp-10 was identified as a suppressor of cks-1(ne549)and other extra-gut mutants. Taken together, these results help us better understand how the fate of intestinal cells are specified and regulated in early C. elegans embryos and broaden our knowledge of cell polarity and fate specification.

Enterohemorrhagic E. coli (EHEC) is a major cause of food borne diarrheal illness worldwide. While disease symptoms are usually self-resolving and limited to severe gastroenteritis with bloody diarrhea, EHEC infection can lead to a life threatening complication known as Hemolytic Uremic Syndrome (HUS), which strikes children disproportionately and is the leading cause of kidney failure in children. Upon infection of gut epithelia, EHEC produces characteristic lesions called actin pedestals. These striking formations involve dramatic rearrangement of host cytoskeletal proteins. EHEC hijacks mammalian signaling pathways to cause destruction of microvilli and rebuilds the actin cytoskeleton underneath sites of bacterial attachment. Here, we present a brief study on a host factor, Calpain, involved in microvilli effacement, and an in depth investigation on a bacterial factor, EspFU, required for actin pedestal formation in intestinal cell models. Calpain is activated by both EHEC and the related pathogen, enteropathogenic E. coli (EPEC), during infection and facilitates microvilli disassembly by cleavage of a key membrane-cytoskeleton anchoring substrate, Ezrin. Actin pedestal formation is facilitated by the injection of two bacterial effectors, Tir and EspFU, into host cells, which work in concert to manipulate the host actin nucleators N-WASP and Arp2/3. EspFU hijacks key host signaling proteins N-WASP and IRTKS by mimetic displacement and has evolved to outcompete mammalian host ligands. Multiple repeats of key functional domains of EspFU are essential for actin pedestal activity through proper localization and competition against the an abundant host factor Eps8 for binding to IRTKS.

No description available.

The absolute clarity of the lens of the eye is vital in the visual system. The unique structural and physiological properties of the lens are tightly integrated with highly ordered protein content to allow the lens to remain transparent. Consequently, any alteration or disturbance of these highly ordered proteins can affect the optical properties of the lens. In humans, cataracts are the major cause of blindness, yet the exact aetiology of cataract formation (cataractogenesis) is not fully understood. The purpose of the current research was to investigate whether deregulation of the Ca²⁺-dependent enzyme, calpains, following changes in lens Ca²⁺ homeostasis, is a key mechanism leading to undesired cleavage of a number of proteins that are linked with maintaining lens transparency and contributing to cataractogenesis. An ovine lens culture (in vitro) system and the heritable ovine cataract (in vivo) model were used to test the research hypothesis. The Ca²⁺ ionophore, ionomycin, was used to induce a Ca²⁺ overload and in vitro opacification during lens culture. Opacity in the lens was graded by a computer image analysis program. Protein profile (SDS-PAGE, 2-DE and Western detection), calpain activity (casein zymography), lens structure (microscopic view) and cytotoxicity level (LDH leakage assay) were analysed in Ca²⁺-induced opaque lenses. The involvement of calpain during opacification was further examined by applying synthetic exogenous calpain inhibitors to the in vitro system. Two novel exogenous calpain inhibitors were also assessed for their therapeutic potential in preventing the progression of cataracts in the in vivo cataract model by topical administration of the inhibitor direct to the sheep's eye over a 11 week period. HPLC was used to detect the penetration of these compounds into ocular tissues. Sustained Ca²⁺ influx into cultured lenses caused dense opacification. The opacity was characterised by formation of a turbid fraction and cell death in the outer cortex of the ovine lens. There was increased calpain autolysis associated with the progress of opacification, indicating increased calpain activity. Major degradation of the cytoskeletal proteins, spectrin and vimentin, was observed whilst there was limited degradation of the lens structural soluble proteins, crystallins, in response to a Ca²⁺ flux. Lens proteins were protected from degradation by adding synthetic calpain inhibitors to the culture medium. Topical administration of novel anti-calpain molecules failed to retard the progression of cataractogenesis in the ovine inherited cataract model. Further investigation of drug penetration showed that efficacy of inhibitory compounds was limited by permeability of these molecules across the cornea and the ability of the molecules to reach and penetrate into the lens. The ovine lens Ca²⁺-induced opacification (OLCO) model in this thesis has provided a model to understand the role of Ca²⁺ homeostasis in lens transparency. With sustained intracellular Ca²⁺ level, the degradation of cytoskeletal elements is highly correlated with calpain activity. Cataractogenesis is the pathological response to the loss of lens Ca²⁺ homeostasis in this model. The current results support the hypothesis that the deregulation of calpain activity is a trigger for a series of cascading events, leading to death of the cells in the lens.

Schaut man durch ein Mikroskop auf eine biologische Zelle mit angefärbten Zytoskelett, so erblickt man lange, mehr oder minder gerade Objekte. Mit ziemlicher Sicherheit gehören diese zu einer von drei Arten von Zytoskelettfilamenten -- Aktin- oder Mikrofilamente, Intermediärfilamente und Mikrotubuli. Schon seit mehreren Jahrzehnten versucht man die mechanischen Eigenschaften lebender Zellen nicht nur zu beschreiben, sondern ihr Verhalten von zwei tieferen Ebenen ausgehend zu verstehen: Inwiefern beschreiben die Eigenschaften von Filamentnetzwerken und -gelen die Zellmechanik und, noch tiefgreifender, wie bestimmen eigentlich die einzelnen Filamente die Netzwerkmechanik. Das Verständnis der Mechanik homogener und isotroper, verhedderter als auch quervernetzter Gele ist dabei erstaunlich detailreich, ohne jedoch vollständig dem jüngeren Verständnis von Zellen als glassartige Systeme zu entsprechen. In den letzten Jahren sind daher anisotrope Strukturen mehr und mehr in den Fokus gerückt, die die Bandbreite möglichen mechanischen Verhaltens enorm bereichern. Die vorliegende Arbeit beschäftigt sich mit solch einem hochgradig anisotropen System -- nämlich Aktinbündeln -- unter drei Gesichtspunkten. Mit Hilfe von aktiven Biegedeformationen wird ein funktionales Modul, das eine differentielle Antwort auf verschiedenen Zeitskalen liefert, identifiziert. Es handelt sich um Aktinfilamente, die durch transiente Quervernetzer gebündelt werden. Während sich das System nach kurz anhaltenden Deformation völlig elastisch verhält, sorgt eine Restrukturierung der Quervernetzer während langanhaltender Deformationen für eine plastische Verformung des Bündels. In einem weiteren Aspekt widmet sich die Arbeit der frequenz- und längenabhängigen Biegesteifigkeit. Die Methode des Bündel-Wigglings, das Induzieren von \"Seilwellen\", wird dabei genutzt, um aus der Wellenform die Biegesteifigkeit zu berechnen. Bündel von Aktinbündeln zeigen dabei ein Verhalten, das vom klassischen Worm-like-chain-Modell abweicht und stattdessen durch das Worm-like-bundle-Modell beschrieben werden kann. Der letzte Aspekt dieser Arbeit untersucht den Musterbildungsprozess bei der Entstehung von Aktinbündeln. Gänzlich unerwartet entstehen quasi-isotrope Strukturen mit langreichweitiger Ordnung, wenn der Bündelungsprozess erst nach der Polymerisation von Filamenten frei von zusätzlichen mechanischen Einwirkungen einsetzt. Da dieser Zustand nicht von der klassischen Flüssigkristalltheorie vorhergesagt wird, soll eine Simulation eine Hypothese zum Entstehungsmechanismus testen. Die Annahme einer lateralen Kondensation von Filamenten zu Bündeln reicht demnach aus, um die beobachteten Strukturen zu erzeugen. Diese Arbeit leistet somit einen Beitrag zum Verständnis hochgradig anisotroper Strukturen und deren Überstrukturen, wie sie auch in lebendigen Zellen reichlich vorhanden sind.:1 Actin filament bundles and patterns 1.1 Actin and other cytoskeletal filaments 1.2 Filament and bundle mechanics 1.2.1 Polymer models 1.2.2 Worm-like bundle theory 1.3 Filament bundling 1.4 Active crosslinkers – contraction and pattern formation 2 Materials and Methods, Instruments and Software 2.1 Actin purification and labeling 2.2 Optical tweezers 2.3 Software libraries for instrument integration 3 Bundle mechanics in the time domain 3.1 Bundle formation and sample preparation 3.2 Bundle bending experiment 3.2.1 LabView VI for bundle bending 3.2.2 Bundle bending 3.2.3 Image analysis and data survey 3.3 Bundle workout – Results of the bending experiments 3.3.1 Multiple bends and elastic response 3.3.2 Endurance test – Plastic response after longer holds 3.3.3 Purely elastic depletion-force induced bundles 3.4 Elastic and plastic deformations of F-actin bundles – Discussion 3.4.1 Bundle formation process and bundle thickness 3.4.2 Elastic response 3.4.3 Elastic versus plastic response 3.5 Differential mechanical response – Summary 4 Bundle mechanics in the frequency domain 4.1 Bundle wiggling – the method 4.2 Bundle formation and sample preparation 4.3 Bundle wiggling experiment 4.3.1 LabView VI for bundle wiggling 4.3.2 Wiggling images to wiggle data 4.4 Bundle wiggling – Results 4.4.1 Bead at end 4.4.2 Wiggling bundled bundles 4.4.3 Thick bundles connected to networks 4.5 Frequency-dependent elastic response of bundles – Discussion 5 Actin bundle networks 5.1 Actin condensation in confined environments – The experiment 5.2 Simulating filament condensation 5.2.1 Implementation details 5.3 Simulation of filament condensation to bundle networks 5.4 Condensation drives pattern formation – Discussion 6 Conclusion A Calculations A.1 Subcircular bending arc and radius of curvature A.2 Correction factor for relaxations times of bundles with bead B Protocols B.1 G-actin from rabbit skeletal muscle B.1.1 Acetone powder prep B.1.2 Actin prep B.1.3 Actin gel-filtration B.2 Buffers B.3 NEM-myosin beads B.3.1 NEM-inactivated myosin B.3.2 NEM-myosin coated beads B.4 Bundle preps B.4.1 Depletion force induced and ff-actinin crosslinked bundles B.4.2 Depletion force induced bundles for wiggling experiments Bibliography / Being the most basic unit of living organisms, the cell is a complex entity comprising thousands of different proteins. Yet only very few of which are considered to play a leading part in the cell’s mechanical integrity. The biopolymers actin, intermediate filaments and microtubules constitute the so-called cytoskeleton – a highly dynamic, constantly restructuring scaffold endowing the cell not only with integrity to sustain mechanical perturbations but also with the ability to rapidly reorganize or even drive directed motion. Actin has been regarded to be the protagonist and tremendous efforts have been made to understand passive actin networks using concepts from polymer rheology and statistical mechanics. In bottom-up approaches isotropic, homogeneous actin-gels are well-characterized with rheological methods that measure elastic and viscous properties on different time scales. Cells, however, are not exclusively isotropic networks of any of the mentioned filaments. Rather, actin alone can already be organized into heterogeneous and highly anisotropic structures like bundles. These heterogeneous structures have only come into focus recently with theoretical work addressing bundle networks. and, in the case of the worm-like bundle theory, individual bundles. This work aims at characterizing bundles and bundle-crosslinker systems mechanically in two complementary approaches – in the time as well as in the frequency domain. In addition, it illuminates a bundle formation mechanism that leads to bundle networks displaying higher ordering.:1 Actin filament bundles and patterns 1.1 Actin and other cytoskeletal filaments 1.2 Filament and bundle mechanics 1.2.1 Polymer models 1.2.2 Worm-like bundle theory 1.3 Filament bundling 1.4 Active crosslinkers – contraction and pattern formation 2 Materials and Methods, Instruments and Software 2.1 Actin purification and labeling 2.2 Optical tweezers 2.3 Software libraries for instrument integration 3 Bundle mechanics in the time domain 3.1 Bundle formation and sample preparation 3.2 Bundle bending experiment 3.2.1 LabView VI for bundle bending 3.2.2 Bundle bending 3.2.3 Image analysis and data survey 3.3 Bundle workout – Results of the bending experiments 3.3.1 Multiple bends and elastic response 3.3.2 Endurance test – Plastic response after longer holds 3.3.3 Purely elastic depletion-force induced bundles 3.4 Elastic and plastic deformations of F-actin bundles – Discussion 3.4.1 Bundle formation process and bundle thickness 3.4.2 Elastic response 3.4.3 Elastic versus plastic response 3.5 Differential mechanical response – Summary 4 Bundle mechanics in the frequency domain 4.1 Bundle wiggling – the method 4.2 Bundle formation and sample preparation 4.3 Bundle wiggling experiment 4.3.1 LabView VI for bundle wiggling 4.3.2 Wiggling images to wiggle data 4.4 Bundle wiggling – Results 4.4.1 Bead at end 4.4.2 Wiggling bundled bundles 4.4.3 Thick bundles connected to networks 4.5 Frequency-dependent elastic response of bundles – Discussion 5 Actin bundle networks 5.1 Actin condensation in confined environments – The experiment 5.2 Simulating filament condensation 5.2.1 Implementation details 5.3 Simulation of filament condensation to bundle networks 5.4 Condensation drives pattern formation – Discussion 6 Conclusion A Calculations A.1 Subcircular bending arc and radius of curvature A.2 Correction factor for relaxations times of bundles with bead B Protocols B.1 G-actin from rabbit skeletal muscle B.1.1 Acetone powder prep B.1.2 Actin prep B.1.3 Actin gel-filtration B.2 Buffers B.3 NEM-myosin beads B.3.1 NEM-inactivated myosin B.3.2 NEM-myosin coated beads B.4 Bundle preps B.4.1 Depletion force induced and ff-actinin crosslinked bundles B.4.2 Depletion force induced bundles for wiggling experiments Bibliography

<p>    </p> <p>When mammalian eggs are fertilized, they undergo an egg-to-embryo transition during which different egg activation events take place. Egg activation events include the establishment of blocks to polyspermy, which prevent multiple sperm from fertilizing an egg. One of these blocks to polyspermy occurs at the level of the egg plasma membrane (the membrane block to polyspermy). Previous work in our lab provides evidence that the mammalian membrane block to polyspermy is mediated by sperm-induced calcium signaling and the egg’s actomyosin cytoskeleton (McAvey et al., 2002). This thesis research builds upon this foundation, testing hypotheses about two specific effector molecules, one involved in calcium signaling and one with the actin cytoskeleton, and also developing the use of an actin probe for live-cell imaging, with the goal of imaging actin dynamics in eggs undergoing fertilization. Specifically, we examined the calcium effector molecule Ca2+/Calmodulin-dependent-protein kinase IIg (<strong>CaMKII</strong>g), based on previous studies showing that CaMKII plays a role in the membrane block (Gardner et al., 2007) and that the g isoform of CaMKII is necessary and sufficient for eggs to complete meiosis (Backs et al., 2010). We tested the hypothesis that CaMKIIg would mediate the membrane block to polyspermy but found that egg activation driven by expression of a constitutively active form of CaMKIIg was not sufficient to establish the membrane block. Our studies of the actin cytoskeleton focused on the Arp2/3 complex as a candidate. We tested the hypothesis that Arp2/3, which mediates actin filament branching, was involved in membrane block establishment, building on the finding that disruption of actin with the drug cytochalasin D impairs the membrane block (McAvey et al., 2022). These studies used the Arp2/3 inhibitor CK666, predicting that we would see increased sperm incorporation in CK666-treated eggs. However, an assay of sperm incorporation over time indicated that Arp2/3 may not play a significant role in the membrane block to polyspermy, although follow-up studies will be beneficial. Lastly, the actin probe SiR- Actin was assessed for use on oocytes undergoing live-cell imaging during meiosis I and II. Oocytes were treated with differing concentrations of SiR-Actin and live cell imaged while maturing through meiosis I or completing meiosis II. Higher doses and longer exposure to SiR- Actin caused abnormalities in oocytes during meiosis I but not in eggs completing meiosis II. Together, this work sets the stage of a range of future studies into the mammalian membrane block to polyspermy. </p>

No description available.

No description available.

<p dir="ltr">Cancer biological mechanisms are a vastly researched area in the field, yet they are not well understood in the various contexts in which cancer is found. Cancerous tumors often exist in harsh, stressful environments for normal cells, but cancer cells can thrive in these conditions. The tumor microenvironment (TME) typically has low oxygen levels (hypoxia), high acidity, and low nutrition. Exposure to the TME leads to many metabolic changes in the cells, enabling cancer to continue proliferating and migrating. However, these metabolic changes are not well understood, especially at the single-cell level. The ability to monitor cells in real time to determine the physical characteristics they undergo is critical to understanding the impact of these metabolic changes. Conventional methods focus on determining the genomic and proteomic changes in large numbers of cells, which may be overlooked if the changes are homogeneous across samples. In this work, we demonstrate the power of using multiple imaging techniques in combination with biochemical methods to visualize metabolic changes and determine the causes in various cancer cells under extreme hypoxia conditions.</p><p dir="ltr">The changes in the microtubule network that occur under hypoxia at the single-cell level are not widely researched. The use of confocal fluorescence microscopy can determine microtubule polymerization in conjunction with eGFP-transfected EB3, a protein that assists in microtubule polymerization. We have determined that hypoxic HeLa cells produce finger-like protrusions when exposed to hypoxia that help with cell migration and, ultimately, cancer cell metastasis. The formation of these protrusions is facilitated by localized mitochondria activities in the protrusions.</p><p dir="ltr">The metabolic changes in lipid droplets (LDs) under hypoxia at the single-cell level remain an elusive topic. The use of stimulated Raman spectroscopy (SRS) and coherent anti-Stokes Raman scattering (CARS) can determine the quantity and spatial-temporal distribution of LDs in cancer cells. We have found that LDs redistribute to the endoplasmic reticulum (ER) and increase in intensity in hypoxic MIA PaCa-2 and A549 cells. Time-lapse CARS microscopy revealed a release-accumulate process of these LDs on ER in hypoxia. We also studied the impact of carbon sources on LD formation and found that MIA PaCa2 cells prefer direct lipid uptake while glucose is also essential to reduce lipotoxicity. The use of hyperspectral stimulated Raman scattering (hSRS) also reveals that the content of the LDs changes to include less cholesteryl ester and a decrease in lipid saturation level.</p><p dir="ltr">Collectively, these findings shed new light on the understanding of cytoskeleton dynamics and lipid metabolism in hypoxic conditions. The discoveries made within this research would lead to better treatment strategies for effective treatment of hypoxia-resistant cancer cells.</p>