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Eicosanoids are potent mediators of inflammatory response whose role has been well established in inflammatory disorders. Release of arachidonic acid by group IVA cytosolic phospholipase A2 α (cPLA2α) is the initial rate limiting step for the production of eicosonoids in response to inflammatory mediators. Previous findings from our laboratory have demonstrated that cPLA2α is directly activated by the emerging bioactive sphingolipid, ceramide-1-phosphate (C1P). In this study, we have developed a modified Triton X-100/phosphatidylcholine (PC) mixed micelle assay which was utilized to determine the kinetics and specificity of this lipid-enzyme interaction. Using this assay, the activity of the enzyme increased in a dose dependent manner with increasing amount of C1P in the mixed micelle and the stoichiometry of this interaction was found to be 2 molecules of C1P to achieve full activation. This activation was found to be lipid specific as other phospholipids such as PE, PS, PA, DAG, and S1P had insignificant effect on cPLA2α activity. Furthermore, based on previous studies we hypothesized that the specific interaction site for C1P was localized to the cationic β-groove (R57, K58, R59) of the C2 domain of cPLA2α. In this regard, mutants of this region of cPLA2α were generated ((R57A/K58A/R59A), (R57A/R59A), (K58A/R59A), (R57A/K58A), (R57A), (K58A), and (R59A)) and examined for C1P affinity by surface plasmon resonance (SPR). The triple, the double mutants, and the single mutant (R59A) demonstrated significantly reduced affinity for C1P containing vesicles compared to wild-type cPLA2α. Examining these five mutants for enzymatic activity demonstrated significant reduction in the ability of C1P to increase the Vmax of the reaction and significantly decreased the dissociation constant (KSA) of the reaction as compared to the wild-type enzyme. The mutational effect was specific for C1P as all of the cationic mutants of cPLA2α demonstrated normal basal activity as well as normal affinities for PC and PtdIns(4,5)P2 compared to wild-type cPLA2α. Finally, we demonstrated these amino acids were critical for translocation of cPLA2α in A549 lung adenocarcinoma cells in response to inflammatory agonists like A23187 and IL-1β. Lastly, we also demonstrated the mechanistic difference between activation of cPLA2α by the two anionic lipids, C1P and PI(4,5)P2.

Ceramide-1-phosphate (C1P) is a bioactive lipid that has been implicated in many biological processes. Our laboratory has conclusively demonstrated its role in inflammation via activation of cPLA2α. The only known enzyme to date responsible for direct synthesis of C1P is ceramide kinase. Very little was known about this enzyme in terms of its enzyme kinetics and substrate specificity. As CERK is an enzyme that acts on membrane lipids, its kinetics cannot be studied using standard bulk dilutions methods. Thus we developed a surface dilution approach using Triton X 100 mixed micelles for studying the kinetics of CERK. We discovered that ceramide kinase has an affinity for naturally occurring long chain ceramides while ceramides containing shorter than 8 carbons are very poor substrates for the enzyme. Also of note is the discovery that there is no discrimination between the naturally occurring long chain ceramides leading to the conclusion that the preponderance of D-e-C16 C1P in cells are due to an availability effect. We also investigated the chain length specificity of interaction between C1P and cPLA2α. Our data indicate that cPLA2α is activated by C1P’s containing acyl chains longer than two carbons. The study showed C2 C1P as being unable to activate cPLA2α thus establishing a tool for the investigation of cPLA2α dependent and independent effects of C1P. In the course of the study we investigated the ethanol/dodecane delivery system as a means of safely delivering lipids to cells. Our data conclusively demonstrate that this delivery system successfully delivers lipids to the internal membranes where their biological action takes place and that at low lipid concentration (<1µM), is non toxic to cells. A significant technical hurdle in the study of C1P was the lack of accurate and reproducible method of quantitatively and qualitatively analyzing the lipid. Using a mass spectrometric approach we developed an accurate technique that now allows us to quantify the lipids in cells. Using this and radiolabeling studies we discovered evidence for production of C1P from S1P via an acyl transferase pathway. Further studies are currently being carried out to identify the enzyme/s responsible for this pathway.

O presente estudo indica que o pHi basal do segmento S3 do túbulo proximal é 7.10 ? 0.007 (n = 444/2117), sendo a extrusão celular de H+ feita pelo trocador Na+/H+ (marjoritariamante) e pela H+-ATPase. Nossos resultados sugerem um papel do cálcio citosólico na regulação do processo de recuperação do pHi após carga ácida, mediada pelo trocador Na+/H+ e pela H+-ATPase. O trocador é estimulado por Aldosterona (10-12, 10-10 e 10-8 M) e inibido por Aldosterona (10-6 M) via ação genômica e não-genômica. Esses resultados são compatíveis com a estimulação do trocador por moderado aumento da [Ca2+]i citosólico (com Aldosterona 10-12 M) e sua inibição por pronunciado aumento da [Ca2+]i (com Aldosterona 10-6 M). A H+-ATPase é estimulada por Aldosterona em todas as doses utilizadas via ação genômica e não-genômica e esses resultados são coincidentes com um aumento da [Ca2+]i, dose dependente. Esses nossos achados são também compatíveis com a demonstração de uma ação hormonal não-genômica (após 1 ou 15 min) e genômica (após 1 hora) na [Ca2+]i, no trocador e na H+-ATPase. Adicionalmente, nossos resultados indicando que os efeitos hormonais genômicos ocorrem via receptor MR são coincidentes com nossos dados demonstrando a expressão desses receptores no segmento S3. Esses efeitos da Aldosterona que acabamos de descrever podem representar uma regulação fisiológica relevante, em condições de depleção e expansão de volume no animal intacto. / The present study indicate that the basal pHi of proximal S3 segment is 7.10 ? 0.007 (n = 444/2117), being made the extrusion by of Na+/H+ exchanger (mainly) and H+-ATPase. Our results suggest a role for cell calcium in regulating the process of pHi recovery after the acid load induced by NH4Cl, mostly mediated by a basolateral Na+/H+ exchanger, and stimulated by Aldosterone (10-12, 10-10 e 10-8 M) and impaired by Aldosterone (10-6 M) via a genomic and nongenomic action. They are compatible with stimulation of the Na+/H+ exchanger by increases in cell calcium in the lower range (at Aldosterone 10-12 M) and inhibition at high cell calcium levels (at Aldosterone 10-6 M). The H+-ATPase is stimulated in all the used doses via a genomic and nongenomic action, this is coincident with the dose-dependent increase in [Ca2+]i. This finding is also compatible with the demonstration of a hormonal nongenomic (after 1 min or 15 min) and genomic (after 1 h) action on [Ca2+]i, on the Na+/H+ exchanger and on H+-ATPase. Our results indicating that the genomics effects are via MR receptor are in accordanc with our finding showing expression of the receptors in the proximal S3 segment of rat. These Aldosterone effects may represent physiologically relevant regulation in conditions of volume depletion or expansion in the intact animal.

MHC-Klasse-I präsentierte Epitope werden überwiegend durch den proteasomalen Abbau von Poly-Ubiquitin markierten Proteinen und defekten ribosomalen Produkten (DRiPs) generiert. Die post-proteasomale Prozessierung durch zytosolische Exo- und Endopeptidasen führt jedoch hauptsächlich zur Epitop-Zerstörung und nur ein sehr geringer Anteil der Peptide entkommt der Degradation. Bisher ist noch unklar, wie die enzymatischen Aktivitäten des heterogenen Peptidase-Pools im Zytosol die finale Epitop-Prozessierung beeinflussen. In der vorliegenden Arbeit wurden heteromere Interaktionen von zytosolischen Peptidasen analysiert und ihre Wirkung auf die Prozessierung und Präsentation von proteasomal generier-ten Vorläuferpeptiden in Bezug auf die HCMVpp65495-503 Epitop-Generierung untersucht. Glycerolgradientenzentrifugationen und Immunpräzipitationsexperimente zeigten, dass die zytosolischen Peptidasen Nardilysin (NRDc) und Aminopeptidase-B (AP-B) in den gleichen Fraktionen sedimentieren und zu heteromeren Komplexen interagieren. Die siRNA- abhängige Reduktion der Proteinexpression beider Peptidasen hatte einen positiven Effekt auf die HCMVpp65 spezifische CTL-Antwort. Demnach vermindert der Peptidase-Komplex die HCMVpp65-spezifische Epitop-Präsentation auf der Zelloberfläche. Im Gegensatz dazu bewirkte ein in vitro rekonstituierter trimerer Peptidase-Komplex jedoch die verstärkte HCMVpp65 Epitop-Generierung aus einem proteasomal generierten Vorläuferpeptid. Auf der anderen Seite führte gereinigte AP-B zu der anhaltenden Zerstörung des Epitops. Die Ergeb-nisse deuten somit darauf hin, dass sowohl einzelne als auch verschiedene Interaktionen von zytosolischen Peptidasen die Prozessierung und Präsentation des HCMVpp65-Epitops unterschiedlich modulieren und somit die HCMVpp65-spezifische antivirale Immunantwort beeinflussen. / MHC class I presented antigens are generated by the degradation of poly- ubiquitinated pro-teins and defective ribosomal products (DRiPs) by a major protease, the 26S proteasome. However, the post- proteasomal processing by cytosolic exo-and endopeptidases mainly leads to epitope destruction and only a very small proportion of the peptides escape degradation. So far, it is still unclear how the enzymatic activity of the heterogeneous pool of peptidases in the cytosol affects final epitope processing and therewith immune response. In the present work heteromeric interactions of cytosolic peptidases and their effect on pro-cessing and presentation of proteasomal generated peptides were analysed with regard to HCMVpp65495-503 epitope generation. Glycerol gradient centrifugation and immunoprecipitation experiments indicate that the cyto-solic peptidases Nardilysine (NRDc) and Aminopeptidase B (AP-B) sediment in the same fractions and interact to heteromeric complexes. The siRNA dependent reduction of protein expression of these two peptidases had a positive effect on the HCMVpp65 specific CTL re-sponse. Thus the peptidase complex reduces HCMVpp65 epitope presentation on the cell sur-face possibly due to epitope destruction. In contrast to the findings of the CTL assays, an in vitro reconstituted trimeric peptidase complex resulted in the increased generation of HCMVpp65 epitopes from a proteasomal generated peptide precursor. On the other hand pu-rified AP-B led to the ongoing destruction of the epitope. The findings obtained show that single cytosolic peptidases and various interactions of cytosolic peptidases regulate the pro-cessing and presentation of the HCMVpp65 epitope differently, thereby influencing the HCMV-specific antiviral immune response.

This thesis comprises of diverse projects all focused towards analysis of mitochondrial translation in unicellular parasites. As only two mitochondrially encoded genes are required during the life cycle stage when Trypanosoma brucei resides in the bloodstream of a mammalian host, this protist provides a simplified background in which to study mitochondrial translation termination phase. The leading project utilizes T. brucei to examine mitochondrial translation termination factor TbMrf1 by gene knockout. Subsequently, it is suggested that the peptidyl-tRNA hydrolase TbPth4 is able to abate the TbMrf1 knockout phenotype by its ability to rescue mitoribosomes that become stalled when TbMrf1 is absent. Additionally, modifying methyltransferase of TbMrf1, the TbMTQ1, was characterized. And finally, this work contributed to the development of the protein expression regulation method in Leishmania parasites, a protocol for measurement of proton pumping activity of FoF1 ATPase complex in native mitochondria, and optimization of purification protocol for hydrophobic recombinant proteins.

O presente estudo indica que o pHi basal do segmento S3 do túbulo proximal é 7.10 ? 0.007 (n = 444/2117), sendo a extrusão celular de H+ feita pelo trocador Na+/H+ (marjoritariamante) e pela H+-ATPase. Nossos resultados sugerem um papel do cálcio citosólico na regulação do processo de recuperação do pHi após carga ácida, mediada pelo trocador Na+/H+ e pela H+-ATPase. O trocador é estimulado por Aldosterona (10-12, 10-10 e 10-8 M) e inibido por Aldosterona (10-6 M) via ação genômica e não-genômica. Esses resultados são compatíveis com a estimulação do trocador por moderado aumento da [Ca2+]i citosólico (com Aldosterona 10-12 M) e sua inibição por pronunciado aumento da [Ca2+]i (com Aldosterona 10-6 M). A H+-ATPase é estimulada por Aldosterona em todas as doses utilizadas via ação genômica e não-genômica e esses resultados são coincidentes com um aumento da [Ca2+]i, dose dependente. Esses nossos achados são também compatíveis com a demonstração de uma ação hormonal não-genômica (após 1 ou 15 min) e genômica (após 1 hora) na [Ca2+]i, no trocador e na H+-ATPase. Adicionalmente, nossos resultados indicando que os efeitos hormonais genômicos ocorrem via receptor MR são coincidentes com nossos dados demonstrando a expressão desses receptores no segmento S3. Esses efeitos da Aldosterona que acabamos de descrever podem representar uma regulação fisiológica relevante, em condições de depleção e expansão de volume no animal intacto. / The present study indicate that the basal pHi of proximal S3 segment is 7.10 ? 0.007 (n = 444/2117), being made the extrusion by of Na+/H+ exchanger (mainly) and H+-ATPase. Our results suggest a role for cell calcium in regulating the process of pHi recovery after the acid load induced by NH4Cl, mostly mediated by a basolateral Na+/H+ exchanger, and stimulated by Aldosterone (10-12, 10-10 e 10-8 M) and impaired by Aldosterone (10-6 M) via a genomic and nongenomic action. They are compatible with stimulation of the Na+/H+ exchanger by increases in cell calcium in the lower range (at Aldosterone 10-12 M) and inhibition at high cell calcium levels (at Aldosterone 10-6 M). The H+-ATPase is stimulated in all the used doses via a genomic and nongenomic action, this is coincident with the dose-dependent increase in [Ca2+]i. This finding is also compatible with the demonstration of a hormonal nongenomic (after 1 min or 15 min) and genomic (after 1 h) action on [Ca2+]i, on the Na+/H+ exchanger and on H+-ATPase. Our results indicating that the genomics effects are via MR receptor are in accordanc with our finding showing expression of the receptors in the proximal S3 segment of rat. These Aldosterone effects may represent physiologically relevant regulation in conditions of volume depletion or expansion in the intact animal.

This study demonstrates the presence of protein kinase C activity in both cytosolic and membrane fractions of bovine lens epithelial cells in culture. Protein kinase C activity is similar in normal and hyperglycemic cells. Furthermore, the ability of the enzyme to translocate from the cytosol to the membrane following phorbol ester treatment is unimpeded by hyperglycemic conditions. Moreover, protein kinase C activation had no effect on myoinositol uptake either in normal cells or in cells exposed to hyperglycemic conditions.

The Master Thesis focuses on monitoring of intracellular ion concentrations in bacteria Escherichia coli and yeast Saccharomyces cerevisiae using genetically encoded fluorescent probes with green fluorescent protein (GFP). Aquired knowledge about this protein and its spectral characteristics is summarized in the introduction. For experimental study a pH-sensitive sensor which displays a ratio change of two excitation fluorescence peaks - pHluorin - was chosen. This probe was tested in bacteria and yeast cells. The experiments concentrated on the ability of the cell to maintain a constant cytosolic pH under various conditions like different pH values of the suspension, addition of glucose or KCl to the suspension. Another topic discussed in the thesis is the elimination of the cell autofluorescence from the GFP signal. For this purpose the synchronous fluorescence scan technique was succesfully used. I have found out that by using this method the measurements of cytosolic pH values are even more accurate thanks to the improved signal to noise ratio.

Les mitochondries jouent un rôle majeur dans le métabolisme de l'ATP des cellules eucaryotes. Le maintien de l'ADN mitochondrial (ADNmt) est fondamental pour la production d'énergie chez les organismes aérobie stricte. De grandes délétions de ADNmt sont à l'origine d'anomalies mitochondriales entrainant des maladies chez l'homme. Plusieurs gènes nucléaires impliqués dans le métabolisme de l’ADNmt ont été identifiés et caractérisés chez l'homme. Cependant, l’ensemble des facteurs et leurs activités requis pour le maintien de l'ADNmt reste largement inconnu. L'identification de ces facteurs et la détermination de leurs activités dans des systèmes modèles simples peuvent contribuer à l’étude du maintien de l'ADNmt et à la compréhension des mécanismes induisant des délétions de l’ADNmt chez l'homme. Le champignon filamenteux Podospora anserina est un modèle d'étude du maintien de l’ADNmt. Chez P. anserina, l’accumulation de délétions région-spécifiques de l’ADNmt (Δmt) est corrélée à la présence de la mutation AS1-4 dans le gène nucléaire codant la protéine cytosolique ribosomale S15. L'altération de la protéine S15 pourrait modifier la traduction de transcrits codant des protéines impliquées dans le maintien de l'ADNmt et indirectement causer l'accumulation des Δmt. Par une approche globale (translatome), nous avons analysé l’ensemble des transcrits associés aux ribosomes AS1-4 en cours de traduction. A partir des données obtenues, deux gènes candidats, PaIML2 et PaYHM2 potentiellement impliqués dans le maintien de l'ADNmt, ont été identifiés et étudiés. L'analyse fonctionnelle a été principalement développée pour PaYHM2. La protéine PaYHM2 partage 68% d’identité avec la protéine mitochondriale bi-fonctionnelle Yhm2 de levure, impliquée dans le transport de métabolites dans la mitochondrie et possèdant un domaine de liaison à l'ADN. J'ai démontré que le gène PaYHM2 est essentiel pour P. anserina, un organisme aérobie stricte et que la protéine PaYHM2 est mitochondriale. Par mutagénèse, j'ai montré que c'est la fonction de transport qui est essentielle à la survie du champignon et non pas la putative capacité à se lier à l'ADN. Les résultats obtenus suggèrent également que PaYHM2 participe au métabolisme de l'acétyl-CoA chez P. anserina. / Mitochondria play main role as adenosine triphosphate (ATP)-energy factories of the eukaryotic cells. To ensure energy production, mitochondrial DNA (mtDNA) maintenance is essential for all obligate-aerobe eukaryotic organisms. Large-scale mtDNA deletions are major causes of mitochondrial dysfunction in human diseases. Several nuclear genes implicated in mtDNA metabolism were identified and characterized in human. Nuclear-encoded factors and their activities required for mtDNA maintenance are, however largely unknown. Identification of these factors and discovery of their activities in simple model systems can contribute to the comprehension of mtDNA maintenance and of the mechanisms leading to mtDNA deletions in human. The filamentous fungus Podospora anserina is a useful model system for studying mtDNA maintenance. An S15 cytosolic ribosomal protein mutant in P. anserina, named AS1-4 mutant, shows a positive correlation with the accumulation of specific large mtDNA deletion (Δmt) at the time of death. Alteration of S15 protein might modify translation of transcripts encoding proteins related to mtDNA maintenance and indirectly cause Δmt accumulation. Polysome profiling (called translatome), a global approach giving genome-wide informations about modified transcripts on translation, was performed on AS1-4 mutant. From the data of this translatome, two candidate genes potentially related to mitochondrial DNA maintenance, the PaIML2 gene and PaYHM2 gene has been identified and functionally analyzed. The function of the PaYHM2 gene has been especially characterized in this project. This gene encodes a protein sharing 68% of identity with yeast Yhm2, a bi-functional protein as a mitochondrial carrier and as a protein with DNA-binding activity. I demonstrated that the PaYHM2 gene is essential for P. anserina, an obligate-aerobe organism and that the PaYHM2 protein localizes to mitochondria. Through mutagenesis approach, I showed that the transport function decides the essentiality of mitochondrial carrier PaYHM2 while the putative DNA binding activity of PaYHM2 protein is important for P. anserina. Furthermore, I found that the function of PaYHM2 probably participates in the cytosolic acetyl-CoA metabolism.