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A Saccharomyces cerevisiae, un increment de la temperatura comporta diversos efectes deleteris en l’organització interna de la cèl∙lula i indueix una inducció ràpida, massiva i transitòria d’expressió gènica, que es controla principalment pels factors de transcripció Hsf1 i Msn2/4. En aquest estudi, fent servir un crivatge genètic a gran escala, hem identificat el conjunt d’activitats que es requereixen per a l’adaptació cel∙lular a l’estrés tèrmic. A més, hem trobat que el complex de desacetilació d’histones de Rpd3 és un component essencial per a l’adaptació i la supervivència a l’estrés tèrmic, i que es requereix per a l’adequada regulació de l’expressió gènica. Concretament, Rpd3 es necessita per a l’activació dels gens depenents de Msn2/4 en resposta a estrés tèrmic. A més, hem trobat que és el complex gran de Rpd3, però no el petit, el qui media l’adaptació cel∙lular. Un increment en l’osmolaritat externa activa la quinasa activada per estrés (SAPK) Hog1, que és essencial per induir diverses respostes adaptatives, com la regulació de l’expressió gènica. Hog1 controla al menys cinc factors de transcripció. Aquí ensenyem que els factors de transcripció Rtg1 i Rtg3 regulen l’expressió d’un conjunt de gens en resposta a estrés osmòtic, d’una manera depenent de Hog1. En resposta a estrés osmòtic, Hog1 es requereix per a l’acumulació nuclear del complex de transcripció de Rtg1/3. Un cop al nucli, Hog1 es recluta als promotors i la seva activitat es requereix per a la unió de Rtg1/3 a la cromatina. A més, la fosforilació de Rtg3 per Hog1 és un pas important per a l’adequada activació transcripcional. / In Saccharomyces cerevisiae, increases in temperature lead to deleterious effects on the internal organization of the cell, and lead to a massive and transient induction of gene expression, mainly controlled by Hsf1 and Msn2/4 transcription factors. In this study, by using a genome‐wide genetic screen, we identified the network of essential activities required for cell adaptation to heat stress. Moreover, we found that the Rpd3 histone deacetylase (HDAC) complex is an essential component for adaptation and survival to heat stress and it is required for proper regulation of gene expression. Specifically, Rpd3 is needed for activation of the Msn2/4‐dependent genes in response to heat stress. Moreover, we found that the large, but not the small Rpd3 complex mediates cell adaptation. Increases in the extracellular osmolarity activate the Hog1 stress‐activated protein kinase (SAPK), which is essential for the induction of diverse osmoadaptive responses, such as regulation of gene expression. At least five transcription factors have been shown to be controlled by Hog1. Here we show that the Rtg1 and Rtg3 transcription factors regulate the expression of a set of genes upon osmostress in a Hog1‐dependent manner. In response to osmostress, Hog1 is required for the nuclear accumulation of the Rtg1/3 transcription complex. Once in the nucleus, Hog1 is recruited at promoters and its activity is required for the binding of Rtg1/3 to chromatin. Moreover, Rtg3 phosphorylation by Hog1 is an important step for proper transcriptional activation.

Résumé<p>L’objectif de ce travail a été d’évaluer la toxicité du butyrate de sodium (NaBu), un inhibiteur des<p>histones désacétylases (HDACs), et ses mécanismes d’action sur les cellules de cancer du sein<p>humain, les cellules MCF-7 déficientes pour la caspase-3, et lignées dérivées :les cellules MCF-<p>7/caspase-3, et les cellules VCREMS résistantes à la vincristine, et dans une moindre mesure à la<p>doxorubicine. La contribution de l’apoptose dans la létalité induite par le NaBu a été recherchée<p>dans les cellules MCF-7wt en estimant l’exposition de la phosphatidylsérine ainsi que le clivage de<p>la PARP. La présence de caspase-3, n’a ni amplifié ni accéléré l’apoptose qui a impliqué le<p>rhéostat Bax/Bcl-2 en faveur d’une induction de Bax. La cytostasie du NaBu dans les cellules<p>MCF-7 s’est manifestée par un blocage des cellules en phase G2/M. L’évaluation du niveau<p>d’expression des régulateurs du cycle cellulaire dans les cellules MCF-7wt et MCF-7/caspase-3 a<p>montré une surexpression de p21, de façon indépendante de p53. L’action cytostatique du NaBu<p>a été associée à une accumulation légère et modeste des formes non-phosphorylées de pRB, un<p>facteur dont la phosphorylation par les complexes cycline D/cdk4,6 et cycline E/cdk2 est<p>nécessaire à la transition G1/S. Dans ces conditions, les niveaux de cdk2 et de Cdc25A, une<p>oncoprotéine activatrice de cdk2, sont restés stables. Le NaBu est une molécule à effet<p>pléïotropique, l’utilisation de la trichostatine A, inhibiteur par excellence des HDACs, a permis<p>d’établir la relation de causalité entre l’inhibition des HDACs et la toxicité du NaBu. La plupart<p>des inhibiteurs des HDACs induisent l’apoptose en perturbant le métabolisme oxydatif de la<p>mitochondrie ce qui pourrait modifier le statut redox cellulaire. Nous avons cherché une<p>implication du métabolisme du glutathion (GSH), le thiol anti-oxydant non-protéique majoritaire<p>de la cellule, dans la toxicité induite par le NaBu. Les résultats montrent que le NaBu induit une<p>déplétion du GSH dans les cellules MCF-7wt et dérivées de façon dose-dépendante, corrélée avec<p>la mortalité cellulaire. Devant l’éventualité d’une consommation accrue de GSH par les enzymes<p>associées à son métabolisme, nous avons évalué le niveau des activités des enzymes glutathion<p>peroxydase, glutathion réductase et glutathion S-transférases. Dans les cellules MCF-7, le NaBu a<p>induit de façon significative ces enzymes anti-oxydantes, à l’exception des GSTs, de même que la<p>catalase, une enzyme indépendante de ce système. Les expériences visant à libérer le pool de<p>GSH lié aux protéines ont montré que la déplétion du GSH intracellulaire est parallèle à celle du<p>GSH lié aux protéines. Par conséquent, la consommation du GSH est réellement la cause de la<p>chute du niveau de GSH générant un stress oxydant. La doxorubicine, un inhibiteur des<p>topoisomérases, a une utilisation clinique limitée en raison de ses effets secondaires irréversibles<p>(cardiotoxicité entre autres). Dans le but d’améliorer son efficacité, nous avons expérimenté des<p>combinaisons NaBu/doxorubicine sur les cellules VCREMS et MCF-7, étant donné la capacité<p>du NaBu à induire l’expression des topoisomérases et favoriser la conformation déployée de la<p>chromatine. L’utilisation de la technique isobologramme nous a permis de déterminer les index<p>de combinaison pour une application simultanée ou séquentielle des drogues. Les résultats<p>indiquent que le NaBu sensibilise les cellules VCREMS et MCF-7 à l’action de la doxorubicine.<p>Dans les cellules VCREMS, cet effet s’est produit en dépit de la stimulation des enzymes de<p>détoxication, GSTs et GPX. L’ensemble de ces résultats indique que l’utilisation du NaBu en<p>combinaison avec certains anticancéreux constitue une stratégie très intéressante en<p>cancérothérapie. / Doctorat en sciences biomédicales / info:eu-repo/semantics/nonPublished

Multiple myeloma and its aggressive variant, plasma cell leukemia, are still considered to be incurable diseases despite the progressive treatment approaches comprising novel drugs. This can be attributed to the presence of the bone marrow microenvironment which plays an important role in drug resistance of myeloma cells. Hematopoietic cell lines derived from hematologic malignancies are suitable models for the study of etiopathogenesis of these malignant diseases and for testing new potential drugs. Establishment of these cell lines is still considered to be coincidental and rare event. The first part of the thesis is focused on establishment and characterization of the cell line UHKT-944 derived from a patient with primary plasma cell leukemia, and on completion of characterization of the cell line UHKT-893 derived from a patient with multiple myeloma. Additional analysis of UHKT-893 cell line were performed including sequence analysis of IgVH gene rearrangements and cytogenetic analysis which contributed to more detailed characterization of this cell line. During cultivation of UHKT-944 cells, we monitored the cell growth and confirmed dependence on interleukin-6 (IL-6). Immunophenotype analysis revealed the presence of surface markers characteristic of malignant plasma cells. UHKT-944 cells...

Ce travail rapporte la synthèse et l'évaluation biologique des molécules hybrides de type isocombrétastatine A-4/belinostat. L'évaluation biologique de cette nouvelle série nous a permis d'identifier deux molécules inhibitrices de la polymérisation de la tubuline ainsi que de la HDAC8 possédant une puissante activité anti-proliférative dans la gamme du nanomolaire. De plus, nous démontrons que le système de catalyseur PtO2/PTSA-MeOH/H2O est très efficace pour convertir les alcynes internes et terminaux en cétones et qu’il est compatible avec une grande variété de groupes fonctionnels. / In this work, we report the synthesis and biological evaluation of isocombretastatin A-4/belinostat hybrid molecules. The biological evaluation of these new series has identified two molecules with potent anti-proliferative activity in the nanomolar range, which exhibit inhibitory activity on tubulin assembly and HDAC8. Second, we demonstrate that the PtO2/PTSA-MeOH/H2O catalyst system is very efficient in converting internal and terminal alkynes to ketones and that it is compatible with a wide variety of functional groups.

Das Pankreaskarzinom bleibt trotz verbesserter Diagnose- und Therapiemöglichkeiten weiterhin eine Krankheit mit einer sehr schlechten Prognose und Lebenserwartung nach Diagnosestellung. Eine innovative Therapiemöglichkeit stellt eine Gruppe von Histondeacetylase-Inhibitoren dar, die einen direkten Einfluss auf die Regulation der Genexpression in Tumorzellen haben. Das Ziel der vorliegenden Arbeit bestand darin, die Wirkung des HDAC-Inhibitors 4-Phenylbutyrat auf Pankreaskarzinomzellen in-vitro und vor allem in-vivo zu untersuchen. Neben dem Einfluss auf die Zellproliferation in-vitro und in-vivo wurde in-vivo im subkutanen und orthotopen Tumormodell der Einfluss auf Tumorwachstum, Zellproliferation, Nekroseausbreitung, Regulation des Connexin 43 und Histonacetylierung im Tumorgewebe untersucht. Die Untersuchungen zeigen, dass 4-PB durch seinen hemmenden Effekt auf das Wachstum von Xenografttumoren und auf die Proliferation von Pankreastumorzellen sowie durch seine fördernde Wirkung auf die Expression von Connexin 43, Acetylierung von H4 und Bildung eine Pseudokapsel, ein potentiell wirksames Medikament bei der experimentellen Behandlung des Pankreaskarzinoms ist.

Zinc-binding proteins represent approximately one tenth of the proteome and a good portion of them are zinc-dependent hydrolases. This thesis focuses on biochemical and structural characterization of glutamate carboxypeptidase II (GCPII) and histone deacetylase 6 (HDAC6), two members of the zinc-dependent metallohydrolase superfamily. We describe here their interactions with natural substrates and inhibitors. GCPII is a homodimeric membrane protease catalyzing hydrolytic cleavage of glutamate from the neurotransmitter N-acetylaspartylglutamate (NAAG) and dietary folates in the central and peripheral nervous systems and small intestine, respectively. This enzyme is associated with several neurological disorders and also presents an ideal target for imaging and treatment of prostate cancer. GCPII inhibitors typically consist of a zinc-binding group (ZBG) linked to an S1' docking moiety (a glutamate moiety or its isostere). As such, these compounds are highly hydrophilic molecules therefore unable to cross the blood-brain barrier and this hampers targeting GCPII to the central nervous system. Different approaches are adopted to alter the S1' docking moiety of the existing inhibitors. As a part of this thesis, we present different strategies relying on replacement of the canonical P1' glutamate residue...

Indiana University-Purdue University Indianapolis (IUPUI) / Friedreich’s Ataxia (FRDA) is a rare and poorly understood autosomal recessive disease caused by a pathological deficiency of the mitochondrial protein frataxin. Patients suffer neurodegeneration, ataxia, diabetes, and heart failure. In an effort to understand the mechanisms of heart failure in FRDA, we investigated the role of the protein modification acetylation, which is highly abundant on mitochondrial proteins and has been implicated in regulating intermediary metabolism. Using mouse models of FRDA, we found that cardiac frataxin deficiency causes progressive hyperacetylation of mitochondrial proteins which is correlated with loss of respiratory chain subunits and an altered mitochondrial redox state. Mitochondrial protein hyperacetylation could be reversed by the mitochondria-localized deacetylase SIRT3 in vitro, suggesting a defect in endogenous SIRT3 activity. Consistently, frataxin-deficient cardiac mitochondria showed significantly decreased rates of fatty acid oxidation and complete oxidation to carbon dioxide. However, the degree of protein hyperacetylation in FRDA could not be fully explained by SIRT3 loss. Our data suggested that intermediary metabolites and perhaps acetyl-CoA, which is required for protein acetylation, are accumulating in frataxin-deficient mitochondria. Upon testing the hypothesis that mitochondrial protein acetylation is non-enzymatic, we found that the minimal chemical conditions of the mitochondrial matrix are sufficient to cause widespread non-enzymatic protein acetylation in vitro. These data suggest that mitochondrial protein hyperacetylation in FRDA cardiomyopathy mediates progressive post-translational suppression of mitochondrial oxidative pathways which is caused by a combination of SIRT3 deficiency and, likely, an accumulation of unoxidized acetyl-CoA capable of initiating non-enzymatic protein acetylation. These findings provide novel insight into the mechanisms underlying a poorly understood and fatal cardiomyopathy and highlight a fundamental biochemical mechanism that had been previously overlooked in biological systems.

Indiana University-Purdue University Indianapolis (IUPUI) / Cytokines are extracellular proteins that mediate communication between cells. T helper cell subsets secrete specific cytokines that promote the development of inflammation. Naïve CD4+ T cells activated and primed in the presence of TGF-β and IL-4 predominantly secrete IL-9, a cytokine that acts as a growth factor for T cells and mast cells, and promotes allergic inflammation. The transcription factors downstream of TGF-β- and IL-4-induced signaling, and that are required for expression of IL-9, have not been previously examined. IL-4 signaling induces the expression of IRF4, a transcription factor required for the development of Th9 cells. IL-4 and the downstream-activated factor STAT6 also interfere with the expression of the transcription factors T-bet and Foxp3 that inhibit IL-9 production from Th9 cells. The TGF-β pathway induces the expression of PU.1, another transcription factor required for Th9 development. In the absence of PU.1 there is increased association of a subset of histone deacetylases to the Il9 promoter. In developing Th9 cells, PU.1 can bind to the Il9 promoter and recruit specific histone acetyltransferases, including Gcn5 to the Il9 gene. Gcn5 functionally contributes to Il9 expression as IL-9 production is diminished when Gcn5 expression is reduced, although other cytokines expressed by Th9 cells are not affected. While Gcn5 is not required for PU.1 or IRF4 binding to Il9, it is important for controlling histone acetylation at the Il9 gene promoter. Together these data define the STAT6-dependent transcription factor network in Th9 cells and the mechanism of PU.1-dependent IL-9 induction in Th9 cells and might indicate that targeting IL-9 regulation is a viable approach for treating inflammatory disease.

SABP2 (Salicylic Acid Binding Protein 2) plays a vital role in the salicylic acid signaling pathway of plants both regarding basal resistance and systemic acquired resistance against pathogen infection. SIP-428 (SABP2 Interacting Protein-428) is a Silent information regulator 2 (SIR2) like deacetylase enzyme that physically interacts with SABP2 in a yeast two-hybrid interaction and confirmed independently by a GST pull-down assay. We demonstrated that SIP- 428 is an NAD+ dependent SIR2 deacetylase enzyme. Transgenic tobacco plants silenced in SIP- 428 expression via RNAi showed enhanced basal resistance to microbial pathogens. Moreover, these SIP-428-silenced lines also exhibited a robust induction of systemic acquired resistance. In contrast, the transgenic tobacco lines overexpressing SIP-428 showed compromised basal resistance and failed to induce systemic acquired resistance. These results indicate that SIP-428 is likely a negative regulator of SA-mediated plant immunity. Experiments using a SABP2 inhibitor showed that SIP-428 likely functions upstream of SABP2 in the salicylic acid signaling pathway. It also indicates that SABP2 is dependent on SIP-428 for its role in the SA signaling pathway. Subcellular localization studies using confocal microscopy and subcellular fractionation showed that SIP-428 localized in the mitochondria. These results clearly show a role for SIP-428 in plant immunity.