The Alpha Magnetic Spectrometer (AMS-02) is a cosmic ray detector operating aboard the International Space Station (ISS) since May 2011. The identification of cosmic ray deuterium and hydrogen particles is the main goal of this work. Using the data collected by the AMS-02 experiment between May 2011 and May 2014 we provide the measurement of the 2H to the 1H ratio between 0.7 and 7 GeV/n. Cosmic rays are mainly composed of hydrogen nuclei. No significant amount of deuterium nuclei is expected to be released from galactic sources since they are destroyed rather than formed in thermonuclear reactions inside stars. As a consequence of their production history, they are part of a class of secondary stable nuclei that provide information on the propagation of cosmic rays in the galaxy. Despite their relevance for propagation studies, very few measurements of deuterium exist above 1 GeV/n, due to the poor isotopic separation capacity of previous experiments. For this reason, the deuterium to hydrogen flux ratio is a very important measurement to be carried out using the data collected by the AMS-02 experiment. The mass and the isotopic composition of cosmic-rays nuclei can be measured by the AMS-02 experiment using measurements of the momentum (provided by the tracker) and velocity of the particles (provided by the Time-of-Flight and the RICH). This analysis is one of the first to be focused on hydrogen isotopic composition with AMS-02 data, and our results are in fair agreement with a similar and independent analysis that has been carried out within the Collaboration. / O Espectômetro Magnético Alpha (AMS-02) é um detetor de raios cósmicos operando na Estação Espacial Internacional (ISS) desde maio de 2011. O principal objetivo deste trabalho é a identificação de deutério e hidrogênio nos raios cósmicos. Usando dados coletados pelo experimento AMS-02 entre maio de 2011 e maio de 2014 foi medida a razão entre os fluxos de 2H e 1H entre 0.7 e 7 GeV/n. Raios cósmicos são compostos, principalmente, por núcleos de hidrogênio. Não é esperado que fontes galácticas de raios cósmicos liberem uma quantidade significativa de núcleos de deutério, já que eles são destruidos, em vez de formados, nas reações termonucleares no interior de estrelas. Assim, eles fazem parte de uma classe de partículas secundárias estáveis que fornecem informações acerca da propagação de raios cósmicos na galáxia. Apesar da relevância para o estudo da propagação de raios cósmicos, poucas medidas da sua quantidade acima de 1 GeV/n existem, devido à baixa capacidade de separação de isótopos de prévios experimentos. Por isso a razão entre os fluxos de deutério e hidrogênio é uma importante medida a ser feita com os dados do AMS-02. A massa, e portanto a composição isotópica dos raios cósmicos, pode ser medida pelo AMS-02 a partir das medições de momento (realizada pelo tracker) e velocidade (realizadas pelo ToF e RICH). Essa análise é uma das primeiras a focar na composição isotópica do hidrogênio com dados do AMS-02, e os resultados estão razoavelmente em acordo com análises independendes semelhantes realizadas na colaboração AMS.

La spectroscopie RMN 2D du deutérium en abondance naturelle (DAN) en utilisant les cristaux liquides chiraux comme solvant de RMN est une méthodologie efficace pour deux raisons: i) l’interaction quadrupolaire (interaction RMN sensible à l’ordre orientationnel des molécules et spécifique aux noyaux de spin I>1/2) n’est plus nulle en moyenne comme dans les liquides; ii) la chiralité du milieu permet de discriminer spectralement des énantiomères (molécule chirale) ou des directions énantiotopes (molécule prochirale). L'objectif principal de ce travail de Thèse était d'explorer le potentiel analytique de cette technique pour analyser le fractionnement isotopique naturel deutérium dans le cas d’ester d’acides gras saturés (AGS) et (poly)insaturés (AGI). Le but ultime de ce travail est de fournir de nouvelles informations (de nature stéréochimique) pour améliorer la compréhension de certains mécanismes enzymatiques impliqués au cours de leur biosynthèse. Dans ce contexte, nous avons montré que l'utilisation de solutions organiques orientées de polypeptides (mésophases chirales) utilisant des co-solvants polaires comme le DMF ou la pyridine (Py) fournissait les meilleurs résultats en termes d’(énantio)discrimination spectrale (nombre de sites et amplitude) sur la base des déplacements chimiques et des éclatements quadrupolaires du deutérium. Ainsi, la mésophase chirale (PBLG/Py) a été utilisée avec succès pour analyser les AGI comme le linoléate de méthyle (C18), pour lequel nous avons pu mesurer l'excès énantio-isotopomèrique (eei) au niveau de chaque site méthylène de la molécule. Pour la première fois, d'importantes informations relatives à la stéréochimie des mécanismes enzymatiques, inaccessibles par la méthode conventionnelle SNIF-NMR®, ont été déterminées. La même méthodologie impliquant la mésophase achirale (PBG/Py) et chirale (PBLG/Py) s’est révélée également être un excellent outil pour l'analyse des SAFA sous leur forme libre (C14 à C18) ou sous leur forme de triglycérides (3*C4 et 3*C14). L'attribution des doublets 2H détectés sur les spectres RMN 2D anisotropes des SAFA a été confirmée par l'élaboration d'un modèle théorique capable de prédire le comportement orientationnel de ces molécules flexibles. Comme exemple illustratif, la méthode a été appliquée pour étudier les mécanismes enzymatiques convertissant le linoléate en vernoléate dans deux plantes différentes. Enfin, pour améliorer la compréhension des interactions «soluté-polypeptide» impliquées dans les mécanismes d'orientation et d’énantio-discrimination, nous avons étudié par RMN 2D DAN, l'évolution des paramètres d'ordre (matrice de Saupe) de deux molécules prochirales, rigides et apolaires dissoutes dans une mésophase chirale préparée en mélangeant deux polypeptides de même stéréochimie (L), mais dont la nature chimique des chaînes latérales est différente, en fonction de leur proportion massique respective. / Natural abundance deuterium (NAD) 2D-NMR spectroscopy using (a)chiral liquid crystals as NMR solvent is a powerful method for two reasons: i) the quadrupolar interaction (an order-sensitive NMR interaction specific to spins I > ½) is not averaged to zero anymore as in liquids; ii) the chirality of medium allows enantiomers (chiral molecule) or enantiotopic directions (prochiral molecule) to be spectrally discriminated. The main objective of this Thesis work was to explore the analytical potential of this technique to analyze the natural distribution of deuterium in the case of esters of saturated fatty acids (SAFA) and (poly)unsaturated fatty acids (PUFA). The ultimate goal of this research is to collect new (stereochemical) information to improve the understanding of some enzymatic mechanisms involved during their biosynthesis. In this context, we have shown that the use of oriented solutions of polypeptide (chiral mesophases) using polar co-solvents such as DMF or pyridine (py) provided better results in terms of spectral (enantio)discrimination (number of sites and magnitude) on the the basis of chemical shifts and deuterium quadrupole splittings. Thus, the chiral mesophase (PBLG/py) has been applied successfully to analyse PUFA’s like the methyl linoleate (C18) for which we could measure the enantio-isotopomeric excess (eie) at each methylen site of the molecule. For the first time, important information related to the stereochemistry of enzymatic mechanisms, inaccessible by the conventional method SNIF-NMR®, have been determined. The same methodology using achiral (PBG / py) and chiral (PBG / py) mesophases, revealed also to be an excellent tool for analysing SAFA in their free form (C14 to C18), or in triglyceride forms (3*C4 and 3*C14). The assignment of 2H doublets detected on 2D-NMR spectra of SAFA’s was confirmed by developing a theoretical model predicting the orientational ordering behavior of these flexible molecules. As illustrative exemple, the method was applied for investigating the enzymatic mechanisms converting the linoleate into vernoleate in two different plants. Finally, to improve the understanding of “solute/polypeptide" interactions involved in the orientation and enantiodiscrimination mechanisms, we have investigated by NAD 2D-NMR the evolution of the order parameters (Saupe matrix) of two apolar, rigid prochiral molecules dissolved in a chiral mesophase made by mixing two polypeptides having the same stereochemistry (L) but different type of side chains, versus their respective mass proportion.

Le marquage isotopique par le deutérium et le tritium est largement utilisé en chimie, en biologie ainsi qu’en recherche pharmaceutique.De nombreuses méthodes de marquage par échange isotopique permettent d’atteindre des enrichissements isotopiques élevés, mais elles requièrent généralement l’utilisation de conditions drastiques (température élevée, acidité). Ainsi, une méthode générale de marquage, régiosélective et douce, applicable à une grande variété de substrats, reste encore à développer. Dans le premier volet de cette thèse, nous avons montré que des nanoparticules de ruthénium (RuNP@PVP), synthétisées par l’équipe du Pr. Bruno Chaudret (INSA Toulouse), catalysaient avec une grande efficacité la réaction d’échange H/D sur des amines, des pyridines et des indoles par C‒H activation, sous 2 bars de D2 à 55 °C. L’application à la deutération de huit molécules azotées d'intérêt biologique a montré que la réaction était efficace sans pour autant altérer l’intégrité chimique ou stéréochimique des composés. Cependant, le respect de la stéréochimie originelle d’un centre chiral C‒H activé demeurait un problème majeur. Nous avons donc entrepris l’étude de la réactivité des RuNP@PVP sur différentes classes de substrats azotés chiraux (amines, aminoacides et peptides) dans l’eau ou dans des solvants organiques. Nos résultats ont montré sans ambiguïté que la C-H activation des carbones C(sp3) chiraux s’effectuait efficacement, sélectivement et dans tous les cas avec une rétention totale de configuration. La large gamme d’application de cette procédure a été démontrée par le marquage de 3 amines chirales, 14 aminoacides naturels, 3 aminoesters aromatiques et 4 peptides. D’autre part, notre collaboration avec l’équipe du Pr. Romuald Poteau (INSA Toulouse) a permis d’identifier deux mécanismes réactionnels par simulation ab initio en parfait accord avec nos résultats expérimentaux : le mécanisme par métathèse de liaison σ et le mécanisme d’addition oxydante. Ces deux mécanismes impliquent deux atomes de ruthénium voisins agissant ensemble pour conduire à la formation d’un intermédiaire-clé original dimétallacycle à quatre centres.Le second volet de cette thèse est consacré au développement d’une nouvelle méthode de détermination de la conformation et de l’arrangement relatif de petites molécules auto-assemblées. Elle repose sur la synergie entre chimie de marquage, RMN du tritium à l’état solide et modélisation moléculaire. Nous nous sommes plus particulièrement intéressés au dipeptide diphénylalanine (Phe-Phe) qui, selon le solvant utilisé, peut former des cristaux (structure résolue) ou s’auto-assembler en nanotubes dont la structure atomique reste inconnue. Trois dipeptides Phe-Phe ditritiés sur des positions aromatiques, définies à l’aide de la modélisation moléculaire par le Dr. Yves Boulard (CEA Saclay), ont été synthétisés. La RMN du tritium à l’état solide a permis au Dr. Thibault Charpentier (CEA Saclay) de mesurer, sur des échantillons cristallisés, trois distances inter-tritiums très proches des distances de référence. Cette technique a également mis en évidence un éventuel désordre d’orientation d’un cycle aromatique de Phe-Phe cristallisé. Une modélisation ab initio nous a également incités à entreprendre un double marquage Caryl et Cα de Phe-Phe, ce dernier utilisant les nanoparticules de ruthénium. Les essais de marquage au deutérium avec RuNP@PVP sont très encourageants et des études complémentaires sont en cours dans notre laboratoire pour parvenir au marquage au tritium. Ainsi, nous espérons mettre au point un nouvel outil d’étude structurale permettant d’accéder à la structure atomique de petites molécules intégrées dans des ensembles supramoléculaires complexes (nanotubes, peptides amyloïdes ou membranaires). / Isotopic labeling with deuterium and tritium is extensively used in chemistry, biology and pharmaceutical research.Numerous methods of labeling by isotopic exchange allow high isotopic enrichments but generally require harsh conditions (high temperatures, acidity). As a consequence, a general, regioselective and smooth labeling method that might be applicable to a wide diversity of substrates remains to develop. In the first part of this thesis, we demonstrated that the use of ruthenium nanoparticles, synthesized by Pr. Bruno Chaudret’s team (INSA Toulouse), allowed the mild (2 bar of deuterium gas at 55°C), effective and selective H/D exchange reaction of a large variety of nitrogen-containing compounds, such as pyridines, indoles and primary, secondary and tertiary alkyl amines. The usefulness and the efficiency of this novel methodology was demonstrated by the deuteration of eight nitrogen-containing molecules of biological interest without altering their chemical and stereochemical properties. However, the conservation of the original stereochemistry of an activated chiral C-H center remains a major issue. We studied the reactivity of RuNP@PVP on different categories of nitrogen-containing substrates (amines, aminoacids and peptides) in water or in organic solvents. Our results showed that C-H activation of chiral carbons C(sp3) took place efficiently, selectively and, in all cases, with total retention of configuration. The wide range of applications of this procedure was demonstrated by the labeling of three chiral amines, fourteen aminoacids, three aromatic aminoesters and four peptides. Moreover, our collaboration with Pr. Romuald Poteau’s team (INSA Toulouse) led to the identification of two mechanisms by ab initio simulation in agreement with our experimental results: the σ-bond metathesis mechanism and the oxidative addition mechanism. These two mechanisms imply two vicinal ruthenium atoms leading to the formation an original dimetallacycle key-intermediate with four centers.The second part of this thesis deals with the development of a new method for the determination of the conformation and the relative arrangement of auto-assembled small molecules. It is based on the synergy between labeling chemistry, tritium solid-state NMR and molecular modeling. We focused on the diphenylalanine dipeptide (Phe-Phe) which forms either crystals or self-assembled nanotubes depending on the solvent. If the crystalline atomic structure of Phe-Phe has been solved, the structure of the self-assembled nanotubes of Phe-Phe is still unknown. Three Phe-Phe dipeptides ditritiated on aromatic positions, determined with the help of molecular modeling by Dr. Yves Boulard (CEA Saclay), were synthesized. Tritium solid-state NMR allowed Dr. Thibault Charpentier (CEA Saclay) to measure, on crystallized samples, three inter-tritiums distances very close to the reference distances. This technique also revealed a possible orientational disorder on an aromatic cycle of crystallized Phe-Phe. Ab initio modeling led us to set a double labeling Caryl and Cα on Phe-Phe with ruthenium nanoparticles. Deuteration with RuNP@PVP are very promising and supplementary studies are in progress to perform tritium labeling. We expect to set a new tool of structural study to determine atomic structures of small molecules integrated in supramolecular complexes (nanotubes, amyloid peptides or membranes).

<p>In this thesis, methods for studying different aspects of proteomics were developed with Fourier Transform Ion Cyclotron Resonance, (FTICR), mass spectrometry. The FTICR technique provides ultra-high mass resolving power, mass accuracy at sub ppm level and sensitivity in the attomole region.</p><p>Methods for quantifying biomarkers in body fluids such as cerebrospinal fluid, (CSF), and plasma were developed. Two sets of global markers with different properties were used for quantitative analysis; S-Methyl Thioacetimidate, (SMTA), and S-Methyl Thiopropionimidate, (SMTP), and [H₄]- and [D₄]-1-Nicotinoyloxy succinimide ester. Reduced ion suppression and higher sensitivity was obtained by coupling a High Performance Liquid Chromatography, (HPLC), system to the FTICR mass spectrometer.</p><p>In body fluids, proteins and peptides are present in a broad dynamic concentration range. Therefore, depleting abundant proteins prior to analysis results in decreased ion suppression and increased sensitivity. Two commercial depletion kits were evaluated with the SMTA- and SMTP-markers.</p><p>For both types of global markers, the experimental error for quantitative analysis of abundant proteins was less than 30%. This provides a lower limit for the protein up- and down regulations in complex solutions that can be monitored with HPLC-FTICR mass spectrometry.</p><p>Together with the identity and quantity of selected proteins the structure, dynamics and interactions with other molecules are of great importance. The later can be elucidated with Hydrogen/Deuterium Exchange, (HDX), mass spectrometry. Structural information at high resolution can be obtained with Collision-Induced Dissociation, (CID), HDX mass spectrometry. In this thesis, exchange rates of amide hydrogens in peptides were in excellent agreement with NMR results.</p><p>In some cases, the CID-fragments have different gas-phase exchange properties and as a consequence the solution phase exchange process can not be monitored. By applying Electron Capture Dissociation, (ECD), at ultra-high vacuum, the exchange process at a specific residue could be monitored.</p>

In this thesis, methods for studying different aspects of proteomics were developed with Fourier Transform Ion Cyclotron Resonance, (FTICR), mass spectrometry. The FTICR technique provides ultra-high mass resolving power, mass accuracy at sub ppm level and sensitivity in the attomole region. Methods for quantifying biomarkers in body fluids such as cerebrospinal fluid, (CSF), and plasma were developed. Two sets of global markers with different properties were used for quantitative analysis; S-Methyl Thioacetimidate, (SMTA), and S-Methyl Thiopropionimidate, (SMTP), and [H4]- and [D4]-1-Nicotinoyloxy succinimide ester. Reduced ion suppression and higher sensitivity was obtained by coupling a High Performance Liquid Chromatography, (HPLC), system to the FTICR mass spectrometer. In body fluids, proteins and peptides are present in a broad dynamic concentration range. Therefore, depleting abundant proteins prior to analysis results in decreased ion suppression and increased sensitivity. Two commercial depletion kits were evaluated with the SMTA- and SMTP-markers. For both types of global markers, the experimental error for quantitative analysis of abundant proteins was less than 30%. This provides a lower limit for the protein up- and down regulations in complex solutions that can be monitored with HPLC-FTICR mass spectrometry. Together with the identity and quantity of selected proteins the structure, dynamics and interactions with other molecules are of great importance. The later can be elucidated with Hydrogen/Deuterium Exchange, (HDX), mass spectrometry. Structural information at high resolution can be obtained with Collision-Induced Dissociation, (CID), HDX mass spectrometry. In this thesis, exchange rates of amide hydrogens in peptides were in excellent agreement with NMR results. In some cases, the CID-fragments have different gas-phase exchange properties and as a consequence the solution phase exchange process can not be monitored. By applying Electron Capture Dissociation, (ECD), at ultra-high vacuum, the exchange process at a specific residue could be monitored.

Investigation of the catalytic formation, reactivity and synthetic scope of sp³-gem-organodimetallic palladio(II)/main group metal (main group metal = tributylstannyl, dialkylalumino) alkane species has been carried out. Insight was expanded regarding the inter- and intramolecular reactivity of vinylmetallic reagents in presence of transition metal catalysts. New Pd-catalysed methodologies for carbon-carbon bond formation were developed, such as cyclopropanation of strained olefins, as well as tandem vinylalane arylation/1,2-methyl transfer and 1,2-diarylation. On the one hand, geminal π-allylpalladio(II)/tributylstannylalkane intermediates are produced by oxidative addition of Pd(0) catalysts to α-tributylstannylpropenyl acetate derivatives. They adopt ambiphilic behaviour depending on the transition metal pre-catalyst, presence or absence of phosphine ligands, and reaction temperature. In presence of tetrakis(triphenylphosphine)palladium(0) with additional bidentate ligand, the carbenoid reactivity of these gem-organobismetallic species is exposed by reaction with dimethyl malonate. Deuterium-labeling studies demonstrated sequential functionalisation of the C-Sn and C-Pd bonds. Conversely, phosphine-free catalyst bis(dibenzylideneacetone)palladium(0) uncovers metal-carbene reactivity, and dimerisation and strained alkene cyclopropanation reactions are observed. The nature of the palladium catalyst controls the reactivity of the carbenoid species. Finally, bis(cyclooctadienerhodium(I) chloride) catalytically activates the alkenylstannane moiety, leaving the allylic acetate leaving group available for further transformations. On the other hand, gem-disubstituted trifluoromethanesulfonyloxy- and iodopalladio(II)/ dialkylaluminoneopentane species are generated by intramolecular migratory insertion of 2,2-disubstituted-1-butenyldialkylalanes with σ-arylpalladium(II) triflate and iodide intermediates. Using excess Lewis-basic 1,4-diazabicyclo[2.2.2]octane, electron-rich tris(para-methoxyphenyl)phosphine ligand and acetonitrile as solvent, tandem arylation/1,2-alkyl migration from aluminum to carbon affords 7-substituted-1-ethyl-1-methylindanes containing an all-carbon quaternary stereogenic centre in good yields. This reaction is tolerant of 6-aryl methyl ethers, thioethers and trimethylsilanes. Deuterium labeling established that protiodealumination of the key neopentyl(methyl)aluminum triflate intermediate is caused by the acetonitrile solvent. The organodimetallic species in that study were shown to be configurationally stable, hence the stereospecificity of the process that proceeds via carbopalladation, transmetalation and reductive elimination of an alkylpalladium(II) intermediate. When applied to 1-naphthyl triflate-tethered vinylalanes, the same reaction conditions mediate stereospecific 1,2-diarylation, leading to 2,3,3a,4-tetrahydro-1H-cyclopenta[def]phenanthrenes in excellent yields. The influence of DABCO, tether length and solvent polarity was studied. Selective tandem arylation/1,2-methyl migration could also be achieved in non-polar solvent in absence of Lewis base. While steric properties took precedence over electronic considerations when inducing product selection, preagostic C-H···Pd interactions were postulated to facilitate 1,3-metal migration in the production of 1H-cyclopenta[def]phenanthrene derivatives.

Investigation of the catalytic formation, reactivity and synthetic scope of sp³-gem-organodimetallic palladio(II)/main group metal (main group metal = tributylstannyl, dialkylalumino) alkane species has been carried out. Insight was expanded regarding the inter- and intramolecular reactivity of vinylmetallic reagents in presence of transition metal catalysts. New Pd-catalysed methodologies for carbon-carbon bond formation were developed, such as cyclopropanation of strained olefins, as well as tandem vinylalane arylation/1,2-methyl transfer and 1,2-diarylation. On the one hand, geminal π-allylpalladio(II)/tributylstannylalkane intermediates are produced by oxidative addition of Pd(0) catalysts to α-tributylstannylpropenyl acetate derivatives. They adopt ambiphilic behaviour depending on the transition metal pre-catalyst, presence or absence of phosphine ligands, and reaction temperature. In presence of tetrakis(triphenylphosphine)palladium(0) with additional bidentate ligand, the carbenoid reactivity of these gem-organobismetallic species is exposed by reaction with dimethyl malonate. Deuterium-labeling studies demonstrated sequential functionalisation of the C-Sn and C-Pd bonds. Conversely, phosphine-free catalyst bis(dibenzylideneacetone)palladium(0) uncovers metal-carbene reactivity, and dimerisation and strained alkene cyclopropanation reactions are observed. The nature of the palladium catalyst controls the reactivity of the carbenoid species. Finally, bis(cyclooctadienerhodium(I) chloride) catalytically activates the alkenylstannane moiety, leaving the allylic acetate leaving group available for further transformations. On the other hand, gem-disubstituted trifluoromethanesulfonyloxy- and iodopalladio(II)/ dialkylaluminoneopentane species are generated by intramolecular migratory insertion of 2,2-disubstituted-1-butenyldialkylalanes with σ-arylpalladium(II) triflate and iodide intermediates. Using excess Lewis-basic 1,4-diazabicyclo[2.2.2]octane, electron-rich tris(para-methoxyphenyl)phosphine ligand and acetonitrile as solvent, tandem arylation/1,2-alkyl migration from aluminum to carbon affords 7-substituted-1-ethyl-1-methylindanes containing an all-carbon quaternary stereogenic centre in good yields. This reaction is tolerant of 6-aryl methyl ethers, thioethers and trimethylsilanes. Deuterium labeling established that protiodealumination of the key neopentyl(methyl)aluminum triflate intermediate is caused by the acetonitrile solvent. The organodimetallic species in that study were shown to be configurationally stable, hence the stereospecificity of the process that proceeds via carbopalladation, transmetalation and reductive elimination of an alkylpalladium(II) intermediate. When applied to 1-naphthyl triflate-tethered vinylalanes, the same reaction conditions mediate stereospecific 1,2-diarylation, leading to 2,3,3a,4-tetrahydro-1H-cyclopenta[def]phenanthrenes in excellent yields. The influence of DABCO, tether length and solvent polarity was studied. Selective tandem arylation/1,2-methyl migration could also be achieved in non-polar solvent in absence of Lewis base. While steric properties took precedence over electronic considerations when inducing product selection, preagostic C-H···Pd interactions were postulated to facilitate 1,3-metal migration in the production of 1H-cyclopenta[def]phenanthrene derivatives.

Thesis (Ph.D.); Submitted to the Univ. of California, Berkeley, CA (US); 24 Nov 2004. / Published through the Information Bridge: DOE Scientific and Technical Information. "UCRL-TH-208645" Allen, M. 11/24/2004. Report is also available in paper and microfiche from NTIS.

Thesis (M.S.)--Uniformed Services University of the Health Sciences, 2005. / Typescript (photocopy).

Deuteration is the replacement of a hydrogen atom by deuterium atom in a molecule. The replacement begins at the most acidic hydrogen in the molecule. In ATP, the deshielded hydrogen is C8-H which is the first replaced during deuteration. During ATP deuteration some of the ATP is hydrolysed to ADP concurrently. Using kinetic analysis, it was confirmed that the ATP hydrolysis that occurs is 1st order in ATP concentration, while the hydrogen replacement is 2nd order. The ATP and its C8 deuterated analogue were tested against three enzymes shikimate kinase (SK), acetate kinase (AK) and glutamine synthetase (GS) to determine if a kinetic isotope effect (KIE) exists in these systems. With AK and GS, the KIED increased as the KIEH decreased, while with SK the KIED decreased as the KIEH increased as the concentration of the ATP or deuterated analogue increased. Deuteration of imidazole and purine compounds reduced the specific activity of AK or SK at low concentrations in an enzyme-catalysed reaction. From a library of imidazole-containing compounds that inhibited SK, three compounds were selected and their IC50 values were determined on the SK-catalysed reaction. These compounds show a differential potency and efficiency between their protonated and deuterated analogues when compared in a 1:1 mixture. Synthesized purines incorporating three different substituents at N-9 were tested against AK or SK for their ability to lower the specific activity of the enzymes used / Physics / M. Sc. (Physics)