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Analytical and statistical methods for the study of movement and conservation of tree-roosting batsWieringa, Jamin G. 08 December 2022 (has links)
No description available.
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Simulation of Relaxation Processes in Fluorescence, EPR and NMR Spectroscopy / Simulering av Relaxationsprocesser inom Fluoresens, EPR och NMR SpektroskopiHåkansson, Pär January 2004 (has links)
Relaxation models are developed using numerical solutions of the Stochastic Liouville Equation of motion. Simplified descriptions such as the stochastic master equation is described in the context of fluorescence depolarisation experiments. Redfield theory is used in order to describe NMR relaxation in bicontinuous phases. The stochastic fluctuations in the relaxation models are accounted for using Brownian Dynamics simulation technique. A novel approach to quantitatively analyse fluorescence depolarisation experiments and to determine intramolecular distances is presented. A new Brownian Dynamics simulation technique is developed in order to characterize translational diffusion along the water lipid interface of bicontinuous cubic phases.
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Non-Coherent Photon Upconversion on Dye-Sensitized Nanostructured ZrO2 Films for Efficient Solar Light HarvestingLissau, Jonas Sandby January 2014 (has links)
Photon upconversion by sensitized triplet–triplet annihilation (UC-STTA) is a photophysical process that facilitates the conversion of two low-energy photons into a single high-energy photon. A low-energy photon is absorbed by a sensitizer molecule that produces a triplet excited state which is transferred to an emitter molecule. When two emitter triplet states encounter each other, TTA can take place to produce a singlet excited state which decays by emission of a high-energy (upconverted) photon. While traditional single-threshold dye-sensitized solar cells (DSSCs) have a maximum efficiency limit of ca. 30%, it has been predicted theoretically that implementation of UC-STTA in DSSCs could increase that efficiency to more than 40%. A possible way to implement UC-STTA into DSSCs, would be to replace the standard sensi- tized nanostructured TiO2 photoanodes by upconverting ones loaded with emitter molecules. Following TTA, the excited emitter molecule would be quenched by injection of a high-energy electron into the conduction band of the TiO2. To explore the practical aspects of this strategy for a highly efficient DSSC, in this thesis UC-STTA is studied in model systems based on nanostructured ZrO2 films. These ZrO2 films are a good proxy for the TiO2 films used in DSSCs, and allow for relatively easy optimization and study of UC-STTA by allowing measurements of the upconverted photons without the complications of electron injection into the film. Herein it is experimentally proven that UC-STTA is viable on nanostructured metal oxide films under non-coherent irradiation with intensities comparable to sunlight. Two different system architectures are studied, differing in the position of the molecular components involved in the UC-STTA mechanism. Both architectures have the emitter molecules adsorbed onto the ZrO2 surface, but the sensitizers are positioned either in solution around the nanostructure, or co-adsorbed with the emitters onto the ZrO2 surface. A set of challenges in the study and optimization of the UC-STTA process is identified for each type of system. Proposals are also given for how to further improve the understanding and UC-STTA optimization of these systems toward application in DSSCs to overcome the present solar energy conversion efficiency limit.
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A new approach to the analyses of fluorescence depolarisation experiments in the presence of electronic energy transportOpanasyuk, Oleg January 2011 (has links)
A new and general procedure is described for a detailed analysis of time-resolved fluorescence depolarisation data in the presence of electronic energy migration. An isotropic ensemble of bifluorophoric molecules (D1-R-D2) has been studied to demonstrate its utility. Intramolecular donor-donor energy migration occurs between the two donor groups (D), which are covalently connected to a rigid linker group (R). These groups undergo restricted reorientational motions with respect to the R group. The analysis of depolarisation data basically involves the search for best-fit parameters which describe the local reorienting motions, the interfluorophore D1-D2 distance, as well as the mutual orientations of the donors. For this, the analysis is partly performed in the Fourier domain and the best-fit parameters are determined by using an approach based on a Genetic Algorithm. The energy migration process has been described by using Monte Carlo simulations and an extended Förster theory. It is found that this theory provides the least time-consuming computational method. Since one-photon and two-photon excited fluorescence experiments can be applied for energy migration studies, a general and unified theoretical formulation is given. To exemplify the developed quantitative approach the depolarisation of the fluorescence in the presence of electronic energy migration within a bis-(9-anthrylmethylphosphonate) bisteroid molecule has been studied by time-resolved two-photon excited fluorescence depolarisation experiments. To solely obtain information about local reorientations of the 9-anthrylmethyl group, also the mono-(9-anthrylmethylphosphonate) bisteroid was studied, which enabled modelling of the ordering potential of the donor. Values of the two-photon absorption tensor components were obtained. To describe the discrepancy between the measured values of the initial anisotropy and fundamental anisotropy predicted by theory the distribution of absorption tensor caused by fast processes have been introduced. An angular parameter of absorption tensor was determined. Reasonable values of the distance between the 9-anthrylmethyl groups, as well as for their mutual orientation were obtained.
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Extended Förster Theory of Electronic Energy Transport within Pairs of Reorienting Chromophoric MoleculesNorlin, Nils January 2009 (has links)
An extended Förster theory (EFT), previously derived (L. B.-Å. Johansson et al. J. Chem. Phys., 1996,105) has theoretically been adapted and used in simulations of donor-acceptor energy transfer (DAET), which is a process often referred to as FRET. It was shown that the classical Förster theory is only valid in the initial part of the fluorescence decay. In this thesis an EFT is derived and outlined for electronic energy transport between two fluorescent molecules which are chemically identical, but photophysically non-identical. The energy migration within such asymmetric pairs is partially reversible and therefore referred to as partial donor-donor energy migration (PDDEM). The previously derived model of PDDEM (S. V. Kalinin et al. Spectrochim Acta Part A, 2002,58) is an approximation of the EFT. In particular, the EFT accounts for the time-dependent reorientations as well as the distance that influence the rate of electronic energy migration. The reorientation of the fluorophores transition dipole moments has been simulated using Brownian dynamics. As a result, the related “k2-problem” has been solved. The EFT of PDDEM has also been studied regarding the effect of PDDEM on experimental observables e.g. quantum yield of fluorescence and steady-state anisotropies
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Two-Photon Excited Fluorescence Depolarisation : Experimental and Theoretical DevelopmentRyderfors, Linus January 2008 (has links)
<p>We have studied fundamental aspects of time-resolved two-photon excited fluorescence depolarisation. The thesis presents experimental as well as theoretical progress. We show that a multi-photon induced instrumental response function obtained from a suspension of gold nanoparticles is appropriate for the analysis of two-photon excited fluorescence decays obtained using time-correlated single photon counting detection. Theoretical expressions have been derived for the fluorescence anisotropy decay obtained upon two-photon excitation of various molecular systems in liquid solutions: a) an anisotropic rigid rotor that undergoes rotational diffusion in the presence of ultrafast unresolved restricted reorientations, e.g. librations. b) a molecular group covalently attached to a stationary macromolecule, and undergoing local reorientation in a uniaxial ordering potential. A new approach to the analysis of two-photon excited fluorescence depolarisation experiments was developed, which combines data obtained by using linearly and circularly polarised excitation light, in a global manner. In the analysis, knowledge about unresolved reorientations was obtained from one-photon excitation studies of the corresponding systems. By means of this procedure it has been possible to obtain quantitative information about the molecular two-photon absorption tensor for perylene and two of its derivatives. Thereby the symmetry of the final excited and intermediate vibronic states could be assigned. The analysis reveals that the two-photon transition studied with the 800 nm laser exhibits mixed character. An important finding from the experiments was that the two-photon absorption tensor appears to be solvent dependent. Furthermore, the thesis presents the first theoretical treatment of two-photon excited donor-donor energy migration in the presence of molecular reorientation and which applies the extended Förster theory. Explicit expressions for molecules that belong to the point groups D<sub>2h</sub>, D<sub>2</sub> and C<sub>2v</sub> are given. Preliminary experiments are finally also reported on a two-photon excited donor-donor energy migration system consisting of a bisanthryl-bisteroid. </p>
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Two-Photon Excited Fluorescence Depolarisation : Experimental and Theoretical DevelopmentRyderfors, Linus January 2008 (has links)
We have studied fundamental aspects of time-resolved two-photon excited fluorescence depolarisation. The thesis presents experimental as well as theoretical progress. We show that a multi-photon induced instrumental response function obtained from a suspension of gold nanoparticles is appropriate for the analysis of two-photon excited fluorescence decays obtained using time-correlated single photon counting detection. Theoretical expressions have been derived for the fluorescence anisotropy decay obtained upon two-photon excitation of various molecular systems in liquid solutions: a) an anisotropic rigid rotor that undergoes rotational diffusion in the presence of ultrafast unresolved restricted reorientations, e.g. librations. b) a molecular group covalently attached to a stationary macromolecule, and undergoing local reorientation in a uniaxial ordering potential. A new approach to the analysis of two-photon excited fluorescence depolarisation experiments was developed, which combines data obtained by using linearly and circularly polarised excitation light, in a global manner. In the analysis, knowledge about unresolved reorientations was obtained from one-photon excitation studies of the corresponding systems. By means of this procedure it has been possible to obtain quantitative information about the molecular two-photon absorption tensor for perylene and two of its derivatives. Thereby the symmetry of the final excited and intermediate vibronic states could be assigned. The analysis reveals that the two-photon transition studied with the 800 nm laser exhibits mixed character. An important finding from the experiments was that the two-photon absorption tensor appears to be solvent dependent. Furthermore, the thesis presents the first theoretical treatment of two-photon excited donor-donor energy migration in the presence of molecular reorientation and which applies the extended Förster theory. Explicit expressions for molecules that belong to the point groups D2h, D2 and C2v are given. Preliminary experiments are finally also reported on a two-photon excited donor-donor energy migration system consisting of a bisanthryl-bisteroid.
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Electronic Energy Transfer within Asymmetric Pairs of Fluorophores: Partial Donor-Donor Energy Migration (PDDEM)Kalinin, Stanislav January 2004 (has links)
A kinetic model of electronic energy migration within pairs of photophysically non-identical fluorophores has been developed. The model applies to fluorescent groups that exhibit different photophysical and spectral properties when attached to different positions in a macromolecule. The energy migration within such asymmetric pairs is partially reversible, which leads to the case of partial donor-donor energy migration (PDDEM). The model of PDDEM is an extension of the recently developed donor-donor energy migration model (DDEM, F. Bergström et al, PNAS 96 (1999) 12477), and applies to quantitative measurements of energy migration rates and distances within macromolecules. One important distinction from the DDEM model is that the distances can be obtained from fluorescence lifetime measurements. A model of fluorescence depolarisation in the presence of PDDEM is also presented. To experimentally test the PDDEM approach, different model systems were studied. The model was applied to measure distances between rhodamine and fluorescein groups within on-purpose synthesised molecules that were solubilised in lipid bilayers. Moreover, distances were measured between BODIPY groups in mutant forms of the plasminogen activator inhibitor of type 2 (PAI-2). Measurements of both the fluorescence intensity decays and the time-resolved depolarisation were performed. The obtained distances were in good agreement with independent determinations. Finally, the PDDEM within pairs of donors is considered, for which both donors exhibit a nonexponential fluorescence decay. In this case it turns out that the fluorescence relaxation of a coupled system contains distance information even if the photophysics of the donors is identical. It is also demonstrated that the choice of relaxation model has a negligible effect on the obtained distances. The latter conclusion holds also for the case of donor-acceptor energy transfer.
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Fluorescence studies of complex systems : organisation of biomoleculesMarushchak, Denys January 2007 (has links)
The homo and hetero dimerisation of two spectroscopically different chromophores were studied, namely: 4,4-difluoro-4-bora-3a,4a-diazas-indacene (g-BODIPY) and its 5-styryl-derivative (r-BODIPY). Various spectroscopic properties of the r-BODIPY in different common solvents were determined. It was shown that g- and r-BODIPY in the ground state can form homo- as well as hetero dimers. We demonstrate that the ganglioside GM1 in lipid bilayers of 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC) exhibits a non-uniform lateral distribution, which is an argument in favour of self-aggregation of GM1 being an intrinsic property of the GM1. This was concluded from energy transfer/migration studies of BODIPY-labelled gangliosides. An algorithm is presented that quantitatively accounts for donor–donor energy migration (DDEM) among fluorophore-labelled proteins forming regular non-covalent polymers. The DDEM algorithm is based on Monte Carlo (MC) and Brownian dynamics (BD) simulations and applies to the calculation of fluorescence depolarisation data, such as the fluorescence anisotropy. Thereby local orientations, as well as reorienting motions of the fluorescent groups are considered in the absence and presence of DDEM among them. A new method, in which a genetic algorithm (GA) was combined with BD and MC simulations, was developed to analyse fluorescence depolarisation data collected by the time-correlated single photon counting technique. It was applied to study g-BODIPY-labelled filamentous actin (F-actin). The technique registered the local order and reorienting motions of the fluorophores, which were covalently coupled to cysteine 374 (C374) in actin and interacted by means of electronic energy migration within the polymer. Analyses of F-actin samples composed of different fractions of labelled actin molecules revealed the known helical organiszation of F-actin, and demonstrated the usefulness of this technique for structure determination of complex protein polymers. The distance from the filament axis to the fluorophore was found to be considerably less than expected from the proposed position of C374 at a high filament radius. In addition, polymerisation experiments with BODIPY-actin suggest a 25-fold more efficient signal for filament formation than pyrene-actin.
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Photon Upconversion Sensitized Rare-Earth Fluoride NanoparticlesMonks, Melissa-Jane 26 June 2023 (has links)
Aufkonversions-Nanokristalle (UCNC) zeichnen sich als einzigartige Lumineszenzreporter aus, die Nah-infrarotes Anregungslicht in Photonen höherer Energie umwandeln. Für die gezielte Anpassung von Eigenschaften, bedarf es ein tiefes Verständnis der Prozesse der Aufwärtskonversionslumineszenz (UCL) und deren Abhängigkeit von Material und Partikeldesign.
Diese Doktorarbeit untersucht die UCL-Prozesse von Yb3+,Er3+ dotierten SrF2-UCNC und zielt darauf ab, die UCL-Eigenschaften der bisher unterschätzten kubischen Wirtsgitter zu verstehen und zu steigern. Hierbei wird die fluorolytische Sol-Gel-Synthese als neuartige Syntheseroute für UCNC vorgestellt. Vorteile wie ausgezeichnete Reproduzierbarkeit, viele Freiheitsgrade bei der Temperaturbehandlung und Partikelgestaltung werden anhand von SrF2 UCNC demonstriert.
Die UCNC wurden mittels UCL-Spektren, UCL-Quantenausbeuten, leistungsdichte-abhängiger relativer spektraler Verteilung sowie der Lumineszenzabklingkinetiken unter Einbeziehung kristalliner Eigenschaften wie der Kristallphase, der Kristallitgröße, der Gitterparameter und der Teilchengröße untersucht.
Die Abhängigkeit der UCL-Eigenschaften von der Dotierungsmenge wurde mit einer umfassenden Dotierungsreihe beschrieben und der optimale Dotierungsbereich (Yb3+,Er3+) von kleinen, ungeschalten SrF2-UCNC eingegrenzt. Bei der Studie dotierter Kerne mit passivierenden Schalen wurde der Einfluss von Temperaturbehandlung auf die UCL-Mechanismen und die Kern-Schale-Vermischung untersucht. Anhand von unterschiedlich kalzinierten UCNC Pulvern wurde die Empfindlichkeit der UCL gegenüber der Änderung kristalliner Eigenschaften, wie Kristallphase, Kristallinität, und Kristallitgröße betrachtet. Zusammen liefern die Dotierungs-, die Kern-Schale- und die Kalzinierungsstudie wertvolle Einblicke in das gitterspezifische Verhalten der UCL-Eigenschaften als Funktion der Energiemigration und der Kristalleigenschaften. / Upconversion nanocrystals (UCNC) represent a unique type of luminescence reporters that convert near-infrared excitation light into higher energy photons. Tailoring UCNC with specific luminescence properties requires an in-depth understanding of upconversion luminescence (UCL) processes and their dependence on material and particle design.
This Ph.D. thesis focuses on the UCL processes of Yb3+,Er3+ doped SrF2-UCNC and aims to understand and enhance the UCL properties of the previously underestimated cubic host lattices. Herein, fluorolytic sol-gel synthesis is introduced as a novel synthetic route for UCNC. Advantages such as excellent reproducibility, high flexibility in temperature treatment and particle design are demonstrated using SrF2 UCNC.
The UCNC were characterized by UCL spectra, UCL quantum yields, excitation power density-dependent relative spectral distribution, and luminescence decay kinetics involving crystalline properties such as crystal phase, crystallite size, lattice parameters, and particle size.
The dependence of UCL properties on doping amount was described in a comprehensive doping study, and the optimal doping range (Yb3+,Er3+) of small, unshelled SrF2-UCNC was identified.
In a core-shell study of doped core UCNC with passivating shells, the influence of temperature treatment on UCL mechanisms and core-shell mixing was investigated. Further, using different calcined UCNC powders, the sensitivity of UCL to the change of crystalline properties, such as crystal phase, crystallinity, and crystallite size, was assessed. Together, the doping, core-shell, and calcination studies provide valuable insight into the lattice-specific behavior of UCL properties as a function of energy migration and crystal properties.
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