No description available.

No description available.

No description available.

<p> As the fundamental basic building blocks of photonic circuits, optical waveguide structures play important roles in modem telecommunication and sensing systems. Various structures ranging from the dielectric waveguide utilizing the total internal reflection (TIR) to the more advanced structures based on the surface plasmon polaritions (SPPs) are widely investigated and studied in industrial and research areas. With the fast development of fabrication technologies, more and more complicated structures are predicated to emerge as the requirement of highly integrated photonic circuits. Modeling and simulation methods, as efficient as well as excellent cost performance tools comparing to costly facilities and time-consuming fabrication procedures, are demanded to explore and design the devices and circuits before their finalization. </p> <P> This thesis reports a series of techniques to model two dimensional waveguide structures, including the conventional planar and surface plasmon polariton waveguides. This thesis contains both the methods and their applications to model and investigate the mode and propagation characteristics including the guided waves and the radiative waves. The methods include mode solvers based on fmite difference method (FDM) and complex mode matching method (CMMM), furnished with perfect matching layer (PML) for both guided and radiation modes. Based on the developed techniques, solutions of design of Bragg gratings with deep corrugations are presented; also various surface plasmon polariton (SPPS) grating structures are investigated. </p> / Thesis / Master of Applied Science (MASc)

A long-period grating is obtained by introducing a periodic refractive index modulation in the core of a hydrogen-sensitized germanosilicate fiber. The phase-matching condition causes light from the fundamental guided mode to couple to discrete, forward-propagating cladding modes. These cladding modes attenuate rapidly on propagation and result in loss bands at distinct wavelengths in the grating transmission spectrum. We present a comprehensive analysis of the spectral modulation provided by long-period gratings. An analytical model is developed to predict the location of the resonance bands as functions of the grating period and the parameters of the host fiber. These gratings with small insertion loss and negligible back-ret1ection are shown to possess two different regions of operation, namely, normal and anomalous. The fabrication and high temperature annealing of these devices is detailed, and a novel method to obtain these gratings without employing ultra-violet radiation is presented. Long-period gratings are proposed as simple yet versatile optical fiber sensors. It is demonstrated that external temperature and axial strain introduce large spectral shifts in the resonance bands. A theoretical evaluation of the sensitivity reveals a strong dependence on the properties of the optical fiber, the grating periodicity, the order of the cladding mode, the writing and annealing conditions, and the index of refraction of the surrounding medium. Temperature-insensitive and strain-insensitive long-period gratings written in standard optical fibers are studied for their sensing characteristics. Long period grating-based refractive index sensors are obtained without etching the cladding of the fiber. It is demonstrated that long-period grating sensors can be implemented with simple demodulation schemes. Applications of these devices to structural health monitoring and biochemical sensing are presented. Finally, long-period gratings are demonstrated as effective sensors that can be used to separate temperature and axial strain acting simultaneously on the fiber. Strain-insensitive gratings are used to extend the dynamic range of the system in the presence of non-linearities and cross-sensitivities. / Ph. D.

The higher-order modes (HOMs) of an optical fiber has been demonstrated as a new dimension to transmitting signals with the development of mode-division multiplexing (MDM) technique. This dissertation aims to explore the HOMs as an extra degree of freedom for device innovation. In particular, with femtosecond (FS) laser point-by-point (PbP) inscription technique which opens up a unique possibility to explore the HOMs for device innovation, we design, fabricate, and characterize novel-structured fiber Bragg gratings (FBGs) written in the step-index two-mode fibers. We also develop a numerical model for the PbP gratings which has the potential for inverse design problem. Chapter 2 begins with a general framework of MDM with adaptive wavefront shaping in few-mode fibers (FMFs) and multimode fibers (MMFs), followed by two examples in slightly more detail. The fabrication setup and an short overview of the FS laser system will also be covered. In Chapter 3, we show the design, fabrication, and characterization of off-axis Bragg gratings in a step-index two-mode fiber (TMF). Through measuring the transmission and reflection spectra along with the associated reflected mode intensity profiles under different input polarization, we experimentally investigate the off-axis TM-FBGs (FBGs in a TMF) with multiple characteristics reported for the first time to our best knowledge. To highlight, we report the laser-induced birefringence exhibits strong offset dependence, the reflectivity heavily depends on the offset and polarization, and particularly the mode pattern can be controlled solely through polarization. The design and characterization of cross-axis TM-FBGs are presented in Chapter 4. Specifically, these gratings show six primary reflection peaks, which are identified through mode-decomposition based on the intensity profiles through nonlinear optimization problem. We also show in this chapter the development of a numerical model for the general PbP gratings, implementation of this model into standard coupled-wave analysis shows reasonable agreement to the experimental findings. In Chapter 5, discussions and suggestions for future studies are given. / Doctor of Philosophy / The higher-order modes (HOMs) of an optical fiber has been demonstrated as a new space for signal transmission, in the ``mode space'' one can use the modes as distinct multiplexing channel and therefore increase the data capacity of a single fiber. This work aims to explore if the the higher-order modes can also add some extra degree of freedom for device innovation. In particular, we use femtosecond (FS) laser point-by-point (PbP) technique for device fabrication, since the structural change induced by this fabrication methods is highly localized, typically ranging from a few hundred nanometers to a few micrometers. Hence this particular fabrication technique offers a unique possibility of exploiting the HOMs for device innovation. In this work, we fabricate, and characterize fiber Bragg gratings (FBGs) with novel structural designs written within the step-index two-mode fibers, with multiple characteristics reported for the first time as far as we know. We also develop a numerical model for the PbP gratings which has the potential for inverse design problem.

Structural health monitoring (SHM) has become a strong national interest because of the need of reliable and accurate damage detection methods for aerospace, civil and mechanical engineering infrastructure. Health monitoring of these structures usually requires the sensors to have such features as large area coverage, maintenance free or minimum maintenance, ultra-low cost per measurement point, and capability of operation in harsh environments. Fiber Bragg grating (FBG) has attracted considerable interest for this application because of its compactness, electromagnetic immunity, and excellent multiplexing capability. Several FBG multiplexing techniques have been developed to increase the multiplexing number and further reduce the unit cost. To the author's best knowledge, the current demonstrated maximum multiplexing number are 800 FBG sensors in a single array using optical frequency domain reflectometry (OFDR), whose maximum fiber span is limited by the coherence length of light source. In this work, we proposed and demonstrated a wavelength-scanning time-division multiplexing (WSTDM) of 1000 ultra-weak FBGs for distributed temperature sensing. In comparison with the OFDR method, the WSTDM method distinguishes the sensors by different time delays, and its maximum operation distance, which is limited by the transmission loss of the fiber, can be as high as tens of kilometers. The strong multiplexing capability and low crosstalk of the ultra-weak FBG sensors was investigated through both theoretical analysis and experiment. An automated FBG fabrication system was developed for fast FBG fabrication. With this WSTDM method, we multiplexed 1000 ultra-weak FBGs for distributed temperature sensing. Besides the demonstrated temperature measurement, the reported method can also be applied to measure other parameters, such as strain, pressure. / Ph. D.

Biosensors are detection devices that couple biological recognition elements to physiochemical transducers to generate quantifiable signals. Immunosensors are biosensors that use antibodies as the recognition element. The highly specific nature of antibody-antigen binding is exploited to create immunosensors that are sensitive to analytes in complex mixtures and demonstrate a rapid response. Fiber optical immunosensors based on long-period gratings have limited sensitivity at the refractive index of ordinary aqueous solutions (~1.33). A composite film was designed to raise the local refractive index of the sensor, thus increasing sensitivity. Titanium dioxide deposition raised the refractive index of the sensor to ~1.42. Bovine serum albumin was immobilized onto a dextran hydrogel and attached to the LPG element via reductive amination. The thickness of the hydrogel was estimated to be 500 nm using Environmental Scanning Electron Microscopy. The affinity film was probed by an evanescent wave to detect changes in refractive index due to the binding of anti-BSA IgG. Under these conditions, the sensor yielded a signal ratio of approximately 10-4 refractive index units per nm signal. Reproducible binding was shown over multiple exposures, with no cross reactivity for non-specific antibodies and other proteins. Anti-BSA IgG (20 µg/mL) in whole serum was recycled through the fiber holder with an accompanying peak wavelength shift that averaged 2 nm on an Optical Spectrum Analyzer with a noise level of 0.1 nm. The BSA affinity film was regenerated 50 times and showed a baseline shift of -1.3 nm. / Master of Science

Tesis por compendio / [ES] La tesis doctoral se centra en el desarrollo de un hidrogel sensible a analitos, funcionalizado con sondas de ADN, con estructura difractiva como transductor óptico para aplicaciones de diagnóstico in vitro. El primer capítulo incluye una visión general de los diferentes conceptos relacionados con el biosensado, los desarrollos recientes en el mercado del diagnóstico in vitro y, en particular, los biosensores de ADN. Además, se presenta la síntesis y caracterización de hidrogeles, su papel como matriz de soporte en biosensado y las estrategias de inmovilización. Por último, se explican los conceptos básicos de la holografía como nueva estrategia de detección y el papel de las diferentes redes de difracción en la biosensación. A continuación, en el Capítulo 2, se discuten los objetivos de este proyecto. El objetivo de esta investigación es desarrollar hidrogeles que incorporen sondas de ADN y dotarlas de una estructura difractiva para que actúen como transductores ópticos sin etiquetas. Se consideran dos tipos de estructuras difractivas: redes holográficas de relieve superficial (SRG) y redes de transmisión de volumen (VTG). La fase inicial de este trabajo se centró en la optimización de hidrogeles, ajustando su composición para que actuaran como biosensores holográficos. Se seleccionaron acrilamida y bisacrilamida para la preparación del hidrogel mediante reacción de polimerización por radicales libres. Además, para introducir la respuesta del analito en la red de hidrogeles 3D, hubo que investigar y poner a punto diferentes estrategias de inmovilización de biorreceptores. En el capítulo 3, la estrategia optimizada consiste en incorporar directamente sondas de ADN modificadas con acridita mediante copolimerización con monómeros de acrilamida durante la formación del hidrogel. Los hidrogeles funcionalizados con ADN se caracterizaron mediante imágenes de fluorescencia y se exploró su versatilidad mediante la fabricación de microarrays. Por último, el hidrogel optimizado sensible a los analitos se utilizó como plataforma para la preparación de SRG. El capítulo 4 describe otro enfoque adoptado para la funcionalización del hidrogel con sondas de ADN. Se añadió un comonómero de acrilato de propargilo al hidrogel de acrilamida, con el fin de introducir la presencia de residuos alcínicos y facilitar una mayor incorporación de las sondas de ADN. Las sondas de ADN utilizadas tenían grupos terminales tiol y se incorporaron mediante química de clic tiol-eno/tiol-yo, debido a la presencia de enlaces C-C dobles y triples. Con esta estrategia, se demostraron dos enfoques de inmovilización de sondas de ADN: durante y después de la síntesis del hidrogel. Los resultados preliminares mostraron que los SRGs tienen potencial para detectar directamente la hibridación de oligonucleótidos en un formato libre de etiquetas. En el capítulo 5, se optimizó el proceso de grabación de VTGs no inclinados en capas de hidrogel para mejorar el rendimiento del transductor. Tras una cuidadosa evaluación de los parámetros de grabación holográfica, las composiciones de las soluciones de incubación y los tiempos de incubación, las estructuras VTG se grabaron con una buena reproducibilidad, logrando una excelente eficiencia de difracción. Además, se estudió su estabilidad en agua para bioensayos. Por último, se observó que los VTG, modificados con oligonucleótidos, respondían selectivamente hibridándose sólo con la diana complementaria, a la vez que conservaban sus propiedades de difracción. El trabajo de investigación demostró la viabilidad de utilizar redes difractivas en capas de hidrogel como biosensores libres de etiquetas, capaces de detectar sondas de ADN, complementarias a la secuencia inmovilizada, en un medio acuoso. Por último, en el capítulo 6, se analizan comparativamente el rendimiento y la aplicabilidad de los distintos enfoques estudiados y se discuten las perspectivas futuras de los hidrogeles de ácidos nucleicos para la detección holográfica. / [CA] La tesi doctoral se centra en el desenvolupament d'un hidrogel sensible a anàlits, funcionalitzat amb sondes d'ADN, amb estructura difractiva com a transductor òptic per a aplicacions de diagnòstic in vitro. El primer capítol inclou una visió general dels diferents conceptes relacionats amb el biosensado, els desenvolupaments recents en el mercat del diagnòstic in vitro i, en particular, els biosensores d'ADN. A més, es presenta la síntesi i caracterització d'hidrogels, el seu paper com a matriu de suport en biosensado i les estratègies d'immobilització. Finalment, s'expliquen els conceptes bàsics de l'holografia com a nova estratègia de detecció i el paper de les diferents xarxes de difracció en la biosensación. A continuació, en el Capítol 2, es discuteixen els objectius d'este projecte. L'objectiu d'esta investigació és desenvolupar hidrogels que incorporen sondes d'ADN i dotar-les d'una estructura difractiva perquè actuen com a transductors òptics sense etiquetes. Es consideren dos tipus d'estructures difractivas: xarxes hologràfiques de relleu superficial (SRG) i xarxes de transmissió de volum (VTG). La fase inicial d'este treball es va centrar en l'optimització d'hidrogels, ajustant la seua composició perquè actuaren com biosensores hologràfics. Es van seleccionar acrilamida I bisacrilamida per a la preparació de l'hidrogel mitjançant reacció de polimerització per radicals lliures. A més, per a introduir la resposta de l'anàlit en la xarxa d'hidrogels 3D, va caldre investigar i posar a punt diferents estratègies d'immobilització de biorreceptores. En el capítol 3, l'estratègia optimitzada consisteix a incorporar directament sondes d'ADN modificades amb acridita mitjançant copolimerización amb monòmers d'acrilamida durant la formació de l'hidrogel. Els hidrogels funcionalitzats amb ADN es van caracteritzar mitjançant imatges de fluorescència i es va explorar la seua versatilitat mitjançant la fabricació de bioxips. Finalment, l'hidrogel optimitzat sensible als anàlits es va utilitzar com a plataforma per a la preparació de SRG. El capítol 4 descriu un altre enfocament adoptat per a la funcionalització de l'hidrogel amb sondes d'ADN. Es va afegir un comonómero de acrilato de propargilo a l'hidrogel d'acrilamida, amb la finalitat d'introduir la presència de residus alcínicos i facilitar una major incorporació de les sondes d'ADN. Les sondes d'ADN utilitzades tenien grups terminals tiol i es van incorporar mitjançant química de clic tiol-eno/tiol-ino, a causa de la presència d'enllaços C-C dobles i triples. Amb esta estratègia, es van demostrar dos enfocaments d'immobilització de sondes d'ADN: durant i després de la síntesi de l'hidrogel. Els resultats preliminars van mostrar que els SRGs tenen potencial per a detectar directament la hibridació de oligonucleótidos en un format lliure d'etiquetes. En el capítol 5, es va optimitzar el procés de gravació de VTGs no inclinats en capes d'hidrogel per a millorar el rendiment del transductor. Després d'una acurada avaluació dels paràmetres de gravació hologràfica, les composicions de les solucions d'incubació i els temps d'incubació, les estructures VTG es van gravar amb una bona reproducibilidad, aconseguint una excel·lent eficiència de difracció. A més, es va estudiar la seua estabilitat en aigua per a bioensayos. Finalment, es va observar que els VTG, modificats amb oligonucleótidos, responien selectivament hibridant-se només amb la diana complementària, alhora que conservaven les seues propietats de difracció. El treball de recerca va demostrar la viabilitat d'utilitzar xarxes difractivas en capes d'hidrogel com biosensores lliures d'etiquetes, capaces de detectar sondes d'ADN, complementàries a la seqüència immobilitzada, en un medi aquós. Finalment, en el capítol 6, s'analitzen comparativament el rendiment i l'aplicabilitat dels diferents enfocaments estudiats i es discuteixen les perspectives futures dels hidrogels d'àcids nucleics per a la detecció hologràfica. / [EN] The PhD thesis focuses on the development of an analyte-sensitive hydrogel, functionalised with DNA probes, with a diffractive structure as an optical transducer for in vitro diagnostic applications. The first chapter includes an overview of the different concepts related to biosensing, recent developments in the in vitro diagnostics market and, in particular, DNA biosensors. Furthermore, the synthesis and characterisation of hydrogels, their role as a support matrix in biosensing and immobilisation strategies are presented. Finally, the basic concepts of holography as a new detection strategy and the role of different diffraction gratings in biosensing are explained. Then, in Chapter 2, the objectives of this project are discussed. The aim of this research is to develop hydrogels that incorporate DNA probes and provide them with a diffractive structure to act as label-free optical transducers. Two types of diffractive structures are considered: surface-relief holographic gratings (SRGs) and volume transmission gratings (VTGs). The initial phase of this work focused on the optimisation of hydrogels, adjusting their composition to act as holographic biosensors. Acrylamide and bisacrylamide were selected for hydrogel preparation by free radical polymerisation reaction. Furthermore, in order to introduce the analyte response into the 3D hydrogel network, different bioreceptor immobilisation strategies had to be investigated and fine-tuned. In chapter 3, the optimised strategy is to directly incorporate acridite-modified DNA probes by copolymerisation with acrylamide monomers during hydrogel formation. The DNA-functionalised hydrogels were characterised by fluorescence imaging and their versatility was explored by microarray fabrication. Finally, the optimised analyte-responsive hydrogel was used as a platform for SRG preparation. Chapter 4 describes another approach adopted for functionalisation of the hydrogel with DNA probes. A propargyl acrylate comonomer was added to the acrylamide hydrogel in order to introduce the presence of alkyl residues and facilitate further incorporation of the DNA probes. The DNA probes used had thiol end-groups and were incorporated by thiol-ene/thiol-yo click chemistry, due to the presence of double and triple C-C bonds. With this strategy, two approaches to DNA probe immobilisation were demonstrated: during and after hydrogel synthesis. Preliminary results showed that SRGs have the potential to directly detect oligonucleotide hybridisation in a label-free format. In chapter 5, the recording process of unslanted VTGs in hydrogel layers was optimised to improve transducer performance. After careful evaluation of holographic recording parameters, incubation solution compositions and incubation times, the VTG structures were recorded with good reproducibility, achieving excellent diffraction efficiency. In addition, their stability in water for bioassays was studied. Finally, oligonucleotide-modified VTGs were found to respond selectively by hybridising only to the complementary target, while retaining their diffraction properties. The research work demonstrated the feasibility of using diffractive networks in hydrogel layers as label-free biosensors, capable of detecting DNA probes, complementary to the immobilised sequence, in an aqueous medium. Finally, in chapter 6, the performance and applicability of the different approaches studied are comparatively analysed and future prospects of nucleic acid hydrogels for holographic detection are discussed. / I would like to acknowledge the government of Valencia to for the PhD fellowship “Santiago Grisolia” and the BEFPI/2022 grant for a 4-months doctoral stay and also the Spanish Ministry of Economy and Competitiveness MINECO (ADBIHOL national project) for their financial support. / Zezza, P. (2023). Holographic biosensors made of DNA-functionalised hydrogels for in vitro diagnostic [Tesis doctoral]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/202597 / Compendio

Essa dissertação de mestrado é dedicada ao estudo, desenvolvimento e caracterização da resposta dinâmica de transdutores de deformação mecânica e de temperatura baseados em grades de Bragg inscritas em fibras ópticas (FBG). Como não se encontram referências diretas na literatura da área sobre a caracterização da resposta dinâmica de sensores de temperatura e deformação a FBG, percebeu-se a importância de realizar um trabalho com ênfase nesse aspecto. O desenvolvimento de transdutores FBG de deformação e de temperatura com resposta dinâmica rápida é de grande importância, já que as grades de Bragg são afetadas, de maneira intrínseca, simultaneamente pelas duas grandezas e que existe um amplo leque de aplicações em que uma delas, ou ambas, variam rapidamente. Nesses casos, diferenças em termos de tempos de resposta entre os sensores utilizados para medição de deformação e os usados para compensação de temperatura podem acarretar em erros significativos nas medidas, o que pode até inviabilizar o uso dos sensores a grades de Bragg em tais aplicações. Este trabalho apresenta um compêndio da teoria da tecnologia das FBG para aplicação em sensores ópticos de deformação e de temperatura. Buscando contribuir para o domínio das técnicas de fabricação de sensores a FBG no Brasil, também são apresentados os resultados experimentais da utilização de grades de Bragg inscritas em fibras ópticas fabricadas no laboratório da Subdivisão de Sensores (EFO-S), da Divisão de Fotônica do Instituto de Estudos Avançados (IEAv) do Comando-Geral de Tecnologia Aeroespacial (CTA), como elementos sensores em ensaios de deformação e de temperatura. Os resultados de caracterizações, tanto de FBG produzidas no IEAv quanto de sensores de deformação e de temperatura comerciais das empresas Micron Optics e Fiber Sensing, foram obtidos por meio de três interrogadores diferentes e são comparados e apresentados neste trabalho. Em uma análise realizada dos resultados apresentados de sensores a FBG, utilizados para medição de temperatura e de deformação mecânica em alguns arranjos experimentais, foram observados comportamentos dinâmicos não lineares que apresentam-se como um obstáculos a serem vencidos para a viabilização da aplicação desta técnica à medição desses parâmetros quando os mesmos são rapidamente variáveis. / This dissertation is devoted to the study, development and characterization of the dynamic response of mechanical strain and temperature transducers based on Bragg gratings inscribed in optical fibers (FBG). Since there are no direct references in the literature on the characterization of the dynamic response of FBG based temperature and strain sensors, it was realized the importance of conducting a study with emphasis on this aspect. The development of FBG strain and temperature transducers with fast dynamic response is of great importance, since the Bragg gratings are intrinsically and simultaneously affected by the two quantities and there is a wide range of applications in which one or both quantities vary rapidly. In such cases, differences in response times between the sensors used for measurement of strain and used for temperature compensation can result in significant errors, which may even preclude the use of FBG sensors in such applications. This work presents a compendium of the theory related to FBG technology for application in optical strain and temperature sensors. Seeking to master the techniques of manufacture of the FBG sensors in Brazil, experimental results from the use of FBG manufactured in the laboratory of Sensors Subdivision (EFO-S), of Photonics Division of Institute of Advanced Studies (IEAv) of General Command for Aerospace Technology (CTA) as sensor elements in strain and temperature trials are also presented. The results of both characterizations, of FBG produced in IEAv and strain and temperature commercial sensors, produced by Micron Optics and Fiber Sensing manufacturers, were obtained from three different interrogators and are compared and presented in this paper. In an analysis of the results of FBG sensors used for measuring temperature and mechanical deformation in some experimental arrangements, nonlinear dynamic behaviors were observed. Such behaviors present themselves as an obstacle to be overcome to achieve the feasibility of applying this technique to measurement of these parameters when they are rapidly changing.