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The largely dominant adaptationist argument is currently used as the framework within which hominid brain evolution is explained; however these adaptationist explanations are inherently problematic and only suffice to ‘clutter’ our knowledge of the possible causes of hominid brain evolution. This study addresses the caveats observed in the fossil record and aims to assess the relative influence of structural laws of form, phylogenetic constraints, and adaptive factors during the course of primate and hominid brain evolution. A combination of methods such as variance partitioning, phylogenetic regression procedures and path analysis indicate that constraints have played a critical role in the scaling attributes of the primate and hominid brain. In particular, developmental constraints governing the scaling attributes of the skull and body are shown to explain up to 50 % of the variation in body mass whereas phylogenetic constraints are purported to have played a lesser role (i.e. 0.8 -3.6 %). In addition, the scaling attributes of neural and non-neural components of the cranial vault suggest a highly constrained suite of traits and suggest that as much as 96 % of the variation in both brain mass and residual endocranial space may be explained by correlated scaling with the cranial vault. Constraints are observed to be far more pliable than traditionally thought – a feature highlighted by intraspecific analyses of scaling attributes in humans. Low regression coefficients typical reported for intraspecific curves are shown to arise during development as greater variation in body parameters is allowed with advancing age. Grade shifts in the scaling of brain and body size for primates and other mammalian orders is also emphasised by this current study and it is argued that correlated changes between the brain and body size may not necessarily impact upon the ‘complexity’ of the neural system as the functional integrity may be maintained via higher output states initiated at certain levels of organisation such as at the level of the cortical area. Although constraints should rightfully be given greater coverage in explanations concerning hominid brain expansion, it is only through implementation of research protocols that take a pluralistic approach to an understanding of the role of both constraints and adaptation in the formation of the brain that our interpretation of the likely mechanism for hominid brain expansion may be understood.

The Cradle of Humankind, famous for its abundance of hominid fossils, has been preserved as a pristine landscape throughout the modern era, thanks to the establishment of the site as a natural and cultural World Heritage Site in 1994 (Maropeng 2016). In this dissertation the complexity surrounding a world heritage hominid fossil site is investigated. Kromdraai Cave, one of the five original caves included in the World Heritage declaration on the Cradle of Humankind, is investigated as a point of connection between conflicting values within the world heritage context. Through the intervention the site is envisioned as connecting not only the values of the world heritage site, but also providing an understanding of the landscape as a whole. The site is envisioned as a centre of knowledge, relating the value of the site directly to the context. The distribution of knowledge will allow the heritage to be accessible, not only to the scientist but also to the community. / Die Wiegvan die Mensdom is bekend vir die oorvloed hominied-fossiele wat daar voorkom, en is dwarsdeur die moderne era as 'n ongerepte landskap bewaar, danksy die die feit dat dit in 1994 as 'n natuurlike en kulturele Werelderfenisgebied verklaar is (Maropeng 2016). Hierdie skripsie ondersoek die kompleksiteite wat so 'n hominied-werelderfenisgebied omring. Kromdraai-grot, een van die vyf oorspronklike grotte wat ingesluit is toe Werelderfenisstatus a an die Wieg van die Mensdom toegeken is, word as aansluitingspunt tussen teenstrydige waardes binne 'n werelderfeniskonteks ondersoek. Deur die voorgestelde ingryping word dit moontlik dat die terrein nie aileen 'n verband skep tussen die onderskeie waardes wat 'n werelderfenisgebied verteenwoordig nie, maar dat daar oak 'n beter begrip van die landskap as 'n geheel verskaf word. Die terrein word as 'n kennissentrum beskou, wat sy waarde direk met die konteks in verband bring. Die verspreiding van kennis sal die erfenis toeganklik maak vir nie net wetenskaplikes nie, maar ook vir die gemeenskap. / Mini Dissertation (MArch (Prof))--University of Pretoria, 2016. / Architecture / MArch (Prof) / Unrestricted

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<p>Humans are more carnivorous than other hominoids. It has been hypothesized that, during the evolution of this increased carnivory, hominins transitioned through a scavenging niche made viable by certain carnivoran taxa (especially sabertooths) that may have lacked the morphology necessary to fully utilize all parts of carcasses (e.g., marrow), therefore leaving an open niche in the form of high-quality scavengable remains available for hominins. In this dissertation, I examine the postcanine dentition of modern carnivorans, using quantifications of occlusal radii of curvature and intercuspid notches, and study the correlation of this morphology with carcass-processing behavior. I use these correlations to deduce the carcass-processing capabilities of the Plio-Pleistocene carnivores of South Africa (a guild for which we have a good appreciation of taxonomic diversity, and that existed at an important time during the evolution of our lineage - possibly the time that we transitioned into that guild), and compare these results with those of previous studies that relied on more conventional morphological measures.</p><p>Both radius of curvature and intercuspid notch data do a good job of separating taxa by dietary category, revealing subtle patterns including possible differences in the carcass-processing abilities of fossil and modern members of some extant species. Other strong trends confirm that the "hunting-hyena," Chasmaporthetes, was probably a hypercarnivore, and not a durophage like its modern confamilial taxa. Somewhat surprisingly, results do not support the hypothesis that sabertooth felids were more hypercarnivorous than modern felids. Furthermore, though the sympatric hypercarnivorous taxa were more numerous, so to were the durophageous taxa, with one taxon, Pachycrocuta, probably exceeding the durophageous capabilities of modern durophages.</p><p>As such, this dissertation shows no evidence that members of the paleo-carnivore guild were capable of producing higher quality scavengable carcasses than are modern carnivorans, and thus, based on these analyses of fossil carnivorans, it does not appear that high-quality scavengable remains were more available in the Plio-Pleistocene than there are today. Therefore, though there is clear evidence from other sources that hominins did scavenge at least occasionally, this dissertation does not support the hypothesis that there was an open niche consisting of high-quality scavengable remains.</p> / Dissertation

abstract: Identifying the ecological role, or niche, that a species occupies within their larger community elucidates environmental adaptability and evolutionary success. This dissertation investigates the occupied niche of chimpanzees (Pan troglodytes schweinfurthii) living in an open, dry savanna-woodland environment by examining patterns of resource use and interspecific interactions. Data were collected October 2010--November 2011 at Issa, in the Ugalla region of western Tanzania, which is one of the driest, most open, and seasonal habitats inhabited by chimpanzees. Unlike most primatological studies which employ methods that include focal follows, this study focused instead on observing 'resource patches' for chimpanzees. Patch focals allow for the observation of all animals within a study area; capture resources that are not used by the study species; and are particularly well suited for unhabituated communities. In order to better understand relationships between environment and behavior, data collected at Issa are compared with published data from other chimpanzee populations. Issa chimpanzees were expected to have broader resource use than forest chimpanzees, as well as increased competition with other fauna, due to fewer available resources. However, in contrast to the assumption of food scarcity in dry habitats, dietary resources were available throughout the year. Like other populations, the diet of Issa chimpanzees consisted of mostly fruit, but unlike at other sites, the majority of plants consumed were woodland species. Additionally, although chimpanzees and other fauna shared spatial and dietary resources, there was only nominal overlap. These results point to extremely low levels of indirect competition between chimpanzees and other fauna. Despite extensive study of forest chimpanzees, little is known about their role within their faunal community in open, dry habitats, nor about how greater seasonality affects resource use. This project addresses both of these important issues and fosters novel approaches in anthropological studies, especially in reference to chimpanzee ecology and evolution. Understanding current chimpanzee behavioral relationships with their environments shapes hypotheses about their pasts, and also informs predictions about behaviors of similar taxa in paleo-environments. Lastly, examining the ecological role of chimpanzees within their larger communities will influence the formation of, as well as evaluate, conservation strategies. / Dissertation/Thesis / Ph.D. Anthropology 2013

This thesis is about the pedagogical transformation of modern scientific knowledge from the field of palaeoanthropology and evolution anthropology to the teaching about human at the first and high schools in the Czech Republic. The main objective of this thesis (realised through four constituent research studies) is to analyse and to describe this complex and multilevel process. The first step was the content analyse of 32 textbooks. We also analysed the framework of the whole process. We realise questionnaire survey among 217 teachers and also interview with 10 teachers. The last research study about student's attitude and knowledge was questionnaire survey among 660 students. We found that there are no serious obstacles in the teaching of (human) evolution from the field of believers in the Czech Republic like in some other countries. It takes usually few decades to get new findings and conceptions into the textbooks, despite it some exceptions exist. Teachers seem to be the key participants of the process of pedagogical transformation. It is not only about the information they teach in their lessons but also about the way how they teach and about the attitude the build-up towards the topic among their students.

Einleitung: Der seit über 30 Jahren ausgiebig erforschte Transkriptionsfaktor p53 besitzt offenbar Funktionen, die über seine bekannte und gut untersuchte Aktivität als Tumorsuppressor hinausgehen. So scheint er auch an der Regulation der menschlichen Lebenserwartung - über die Vermittlung einer allgemeinen physischen Robustheit - sowie der weiblichen Fertilität beteiligt zu sein. Insbesondere Primaten zeichnen sich durch eine vergleichsweise lange Lebenserwartung und eine lange reproduktive Phase aus. Ob p53 hier eine Rolle spielen könnte, ist unbekannt. Unsere Arbeitsgruppe entdeckte vor einigen Jahren das humane endogene Retrovirus-K (HERV-K) Protein Np9, dessen Gen sich in mehreren Kopien nur bei Menschen, Schimpansen und Gorillas findet. Weitere Untersuchungen wiesen außerdem darauf hin, dass Np9 an den Tumorsuppressor p53 zu binden vermag. Ziele der Untersuchungen: Es stellte sich also die Frage, ob die Funktion von p53 durch die Bindung an Np9 moduliert werden kann. Eine derartige Modulation des multifunktionellen Transkriptionsfaktors wäre natürlich auf Hominiden beschränkt. In der vorliegenden Arbeit sollten einige Teilaspekte der Interaktion von p53 und Np9 näher untersucht werden. Material und Methoden: Für die Bindungskartierung von p53 und Np9 wurden GST-Pulldown-Analysen durchgeführt. Die GST-Protein-Plasmide wurden in E.coli BL21 transformiert und nach Induktion mit IPTG exprimiert. Sie dienten als „Fängerproteine“ und waren dank ihres Glutathion-S-Transferase-tags in der Lage an GST-Sepharose-Kügelchen zu binden. Der putative Interaktionspartner als „Beuteprotein“ wurde in vitro translatiert und in diesem Zuge auch mit 35S radioaktiv markiert. Dann wurde er mit den an die Beads gebundenen GST-Proteinen inkubiert und anschließend die Proben auf ein SDS-Gel aufgetragen und aufgetrennt. Das Gel wurde anschließend auf eine Membran übertragen und der Blot auf einen Radioaktivfilm aufgelegt, woraufhin die Protein-Protein-Bindungen anhand des radioaktiven Beuteproteins als Banden erkennbar waren. Abschließend wurde der Blot mit GST-Antikörper inkubiert, dann am Folgetag mit Anti-Mouse-Antikörper. Mittels ECL Substrat konnte nun die Bindung der GST-getaggten Proteine an die Sepharosebeads nachgewiesen werden. Für den Electrophoretic Mobility Shift Assay wurden verschiedene Versuchsansätze pipettiert, welchen nach einer Inkubationszeit das zuvor mit 32P radioaktiv markierte Oligonukleotid zugegeben wurde. Nach erneuter Inkubation wurden die Proben auf das nicht-denaturiende EMSA-Gel aufgetragen und elektrophoretisch aufgetrennt. Dabei wurden die Protein-Oligonukleotid-Verbindungen gemäß ihrer Ladung, Größe und Konformation getrennt. Die Gele wurden im Geltrockner getrocknet und direkt mit einer Verstärkerfolie auf den Radioaktivfilm in einer Radioaktivkassette aufgelegt. Ergebnisse: Zunächst war es notwendig, die Bindung der beiden Partner biochemisch zu kartieren. Dies geschah mittels der GST-Pulldown-Analyse, in der Fragmente der Proteine exprimiert, miteinander inkubiert und schließlich kopräzipitiert wurden. Es stellte sich heraus, dass p53 mit seinem C-Terminus an Np9 bindet. Np9 hingegen band mit seinen Aminosäureresten (aa) 1-64 (ohne den C-terminus mit den aa 65-74) an p53. Das Np9-Fragment 36-74 zeigte nur eine schwache Bindung an p53. Interessanterweise band das Np9-Fragment 36-64 stärker an p53 als Volllängen-Np9 (1-74), was auf eine die Interaktion hemmende Domäne im C-Terminus von Np9 hinweisen könnte. Um zu untersuchen, ob die Bindung von Np9 an den C-Terminus von p53 die p53-DNA-Interaktion beeinflusst, wurden Electrophoretic Mobility Shift Assays (EMSAs) durchgeführt. Es konnte gezeigt werden, dass Np9-zumindest in vitro-durch Bindung an die regulatorische Domäne von p53 und in Anwesenheit des p53-aktivierenden Antikörpers PAb421 in der Lage war, die spezifische Bindungsfähigkeit von p53 an DNA zu erhöhen und somit seine Funktion als Transkriptionsfaktor zu unterstützen. Schlussfolgerungen: Die Resultate weisen also erstmals darauf hin, dass das nukleäre HERV-K Protein Np9 spezifisch in Hominiden eine p53-abhängige Tumorsuppressoreigenschaft aufweisen könnte. Weitere Untersuchungen-insbesondere in vivo-sind nun notwendig. Dies könnte auch als Forschungsgrundlage zu endogenen Retrovirusproteinen beim Pferd dienen.:1 Einleitung und Zielsetzung der Arbeit 1 2 Literaturübersicht 2 2.1 Der Tumorsuppressor p53 2 2.2 Das Kernprotein Np9 7 2.2.1 Retroviren 7 2.2.2 Endogene Retroviren 8 2.2.3 Humane endogene Retroviren 8 2.2.4 HERV-K 10 2.2.5 Das nukleäre Protein Np9 10 3 Material und Methoden 15 3.1 Material 15 3.1.1 Chemikalien 15 3.1.2 Puffer und Lösungen 17 3.1.3 Antikörper 21 3.1.4 Enzyme 22 3.1.5 Reaktionskits 22 3.1.6 Bakterienstämme 23 3.1.7 Kulturmedien 23 3.1.8 Oligonukleotide für EMSA 23 3.1.9 Größenstandards 24 3.1.10 Plasmide 26 3.2 Methoden 28 3.2.1 Nukleinsäuretechniken 28 3.2.2 Protein-Methoden 31 3.2.3 Prokaryonten 40 4 Ergebnisse 42 4.1 Interaktion zwischen Np9 und dem Tumorsuppressorprotein p53 42 4.2 GST-Pulldown 43 4.2.1 Klonierung für die GST-Pulldown-Analysen 43 4.2.2 Induktion der Proteinexpression 48 4.2.3 GST-Pulldown-Experimente 53 4.3 EMSA (Electrophoretic Mobility Shift Assay) 57 4.3.1 Radioaktive Markierung der Sonden 58 4.3.2 EMSA-Experimente 58 5 Diskussion 63 6 Zusammenfassung 68 7 Summary 70 8 Literaturverzeichnis 72 Danksagung 86 Abbildungsverzeichnis 87 Tabellenverzeichnis 88 / Introduction: The transcription factor p53, extensively investigated for over 30 years, apparently has functions which exceeds his known and well examined activity as a tumor suppressor. It seems to be involved in the regulation of the human life expectancy – by providing a general physical robustness - as well as of the female fecundity. Primates too are characterized by a comparatively long life expectancy and long reproductive phases, yet the possible influence of p53 is unknown. Our research group has discovered some years ago the Np9 protein of human endogenous retrovirus K (HERV K), which is found in several copies only with humans, chimpanzees and gorillas. Other investigations by our group suggested that Np9 might be able to interact with the tumor suppressor p53. Objective of the investigations: To study whether the function of p53 can be modulated by the interaction with Np9. Such a modulation of the multifunctional transcription factor would of course be limited to hominids. In the present work some aspects of the interaction between p53 and Np9 were analysed. Materials and methods: For the mapping of the interaction of p53 and Np9, GST pulldown assays were carried out. The GST protein plasmids were transformed in E. coli BL21 and expressed after IPTG induction. They served as bait proteins and bound to GST sepharose beads because of their Glutathione S-transferase-tags. The putative interaction partner as a prey protein was translated in vitro and radioactively marked with 35S. After being incubated with the GST-proteins bound to the beads, the samples were transferred on a SDS gel and separated. The gel was transferred to a membrane and the blot was exposed to an X-ray film. Thus, the radioactively labelled prey protein forms bands that identify the protein-protein interaction. Finally the blot was incubated with GST antibody, then on the following day with anti-mouse antibody. Using ECL-substrate it was now possible to demonstrate that the GST-tagged proteins bound to the sepharose beads. For the Electrophoretic Mobility Shift Assay different samples were prepared and, after an incubation time, the oligonucleotide radioactively marked with 32P was added. After additional incubation it was transferred on non-denaturating EMSA gel and separated by electrophoresis. Thus the protein oligonucleotide conjugates were separated according to charge, size and conformation. The gels were dried in the gel dryer, transferred to a membrane and placed against an X-ray film in a cassette. Results: Initially a biochemical mapping of the binding of the two partners had to be carried out. This was done by means of the GST pulldown assay, in which fragments of the proteins were extruded, incubated together and finally co-precipitated. It turned out that the C-terminus of p53 bound to Np9. However, Np9 bound to p53 with his amino acid residues (aa) 1-64 (lacking the C-terminal aa 65-74). The Np9 fragment 36-74 showed only a weak binding to p53. Interestingly the Np9 fragment 36-64 was binding stronger to p53 than a full length Np9 (1-74), which could point to a C-terminal domain in Np 9 inhibiting the interaction. In order to examine whether the binding of Np9 to the C-terminal of p53 affects the interaction of p53 with DNA, Electrophoretic Mobility Shift Assays (EMSAs) were carried out. It could be shown that Np9 was able to raise the specific binding ability of p53 with DNA and to support therefore its function as a transcription factor, by binding to the regulatory domain of p53 in presence of the activating p53 antibody PAB421. Conclusions: The results show for the first time that, specifically in hominids, the nuclear HERV-K protein Np9 could have a tumor suppressing quality that is dependent on p53. Further investigations, in particular in vivo, are necessary. This could be the starting point for research on equine endogenous retrovirusproteins in horses.:1 Einleitung und Zielsetzung der Arbeit 1 2 Literaturübersicht 2 2.1 Der Tumorsuppressor p53 2 2.2 Das Kernprotein Np9 7 2.2.1 Retroviren 7 2.2.2 Endogene Retroviren 8 2.2.3 Humane endogene Retroviren 8 2.2.4 HERV-K 10 2.2.5 Das nukleäre Protein Np9 10 3 Material und Methoden 15 3.1 Material 15 3.1.1 Chemikalien 15 3.1.2 Puffer und Lösungen 17 3.1.3 Antikörper 21 3.1.4 Enzyme 22 3.1.5 Reaktionskits 22 3.1.6 Bakterienstämme 23 3.1.7 Kulturmedien 23 3.1.8 Oligonukleotide für EMSA 23 3.1.9 Größenstandards 24 3.1.10 Plasmide 26 3.2 Methoden 28 3.2.1 Nukleinsäuretechniken 28 3.2.2 Protein-Methoden 31 3.2.3 Prokaryonten 40 4 Ergebnisse 42 4.1 Interaktion zwischen Np9 und dem Tumorsuppressorprotein p53 42 4.2 GST-Pulldown 43 4.2.1 Klonierung für die GST-Pulldown-Analysen 43 4.2.2 Induktion der Proteinexpression 48 4.2.3 GST-Pulldown-Experimente 53 4.3 EMSA (Electrophoretic Mobility Shift Assay) 57 4.3.1 Radioaktive Markierung der Sonden 58 4.3.2 EMSA-Experimente 58 5 Diskussion 63 6 Zusammenfassung 68 7 Summary 70 8 Literaturverzeichnis 72 Danksagung 86 Abbildungsverzeichnis 87 Tabellenverzeichnis 88