Le Virus Herpès Simplex de type 1 (HSV-1) est un agent infectieux qui cause l’herpès chez une grande proportion de la population mondiale. L’herpès est généralement considéré comme une maladie bénigne dont la forme la plus commune est l'herpès labial (communément appelé « bouton de fièvre »), mais elle peut se révéler très sérieuse et causer la cécité et l’encéphalite, voir létale dans certain cas. Le virus persiste toute la vie dans le corps de son hôte. Jusqu'à présent, aucun traitement ne peut éliminer le virus et aucun vaccin n’a été prouvé efficace pour contrôler l’infection herpétique. HSV-1 est un virus avec un génome d’ADN bicaténaire contenu dans une capside icosaèdrale entourée d’une enveloppe lipidique. Treize glycoprotéines virales se trouvent dans cette enveloppe et sont connues ou supposées jouer des rôles distincts dans différentes étapes du cycle de réplication viral, incluant l'attachement, l'entrée, l’assemblage, et la propagation des virus. La glycoprotéine M (gM) qui figure parmi ces glycoprotéines d’enveloppe, est la seule glycoprotéine non essentielle mais est conservée dans toute la famille herpesviridae. Récemment, l’homologue de gM dans le Pseudorabies virus (PRV), un autre herpesvirus, a été impliqué dans la phase finale de l’assemblage (i.e. l’enveloppement cytoplasmique) au niveau du réseau trans-Golgi (TGN) en reconnaissant spécifiquement des protéines tégumentaires et d’autres glycoprotéines d’enveloppe ([1]). Toutefois, il a été proposé que cette hypothèse ne s’applique pas pour le HSV-1 ([2]). De plus, contrairement à la localisation au TGN dans les cellules transfectées, HSV-1 gM se localise dans la membrane nucléaire et sur les virions périnucléaires durant une infection. L’objectif du projet présenté ici était d’éclaircir la relation de la localisation et la fonction de HSV-1 gM dans le contexte d’une infection. Dans les résultats rapportés ici, nous décrivons tout abord un mécanisme spécifique de ciblage nucléaire de HSV-1 gM. En phase précoce d’une infection, gM est ciblée à la membrane nucléaire d'une manière virus ii dépendante. Cela se produit avant la réorganisation du TGN normalement induite par l’infection et avant que gM n’entre dans la voie de sécrétion. Ce ciblage nucléaire actif et spécifique de gM ne semble pas dépendre des plusieurs des partenaires d’interaction proposés dans la littérature. Ces données suggèrent que la forme nucléaire de gM pourrait avoir un nouveau rôle indépendant de l’enveloppement final dans le cytoplasme. Dans la deuxième partie du travail présenté ici, nous avons concentré nos efforts sur le rôle de gM dans l’assemblage du virus en phase tardive de l’infection et en identifiant un domaine critique de gM. Nos résultats mettent en valeur l’importance du domaine carboxyl-terminal cytoplasmique de gM dans le transport de gM du réticulum endoplasmique (RE) à l’appareil de Golgi, dans l’enveloppement cytoplasmique et la propagation intercellulaire du virus. Ainsi, l’export du RE de gM a été complètement compromis dans les cellules transfectées exprimant un mutant de gM dépourvu de sa région C-terminale. La délétion la queue cytoplasmique de gM cause une réduction légère du titre viral et de la taille des plaques. L'analyse de ces mutants par microscopie électronique a démontré une accumulation des nucléocapsides sans enveloppe dans le cytoplasme par rapport aux virus de type sauvage. Étrangement, ce phénotype était apparent dans les cellules BHK mais absent dans les cellules 143B, suggérant que la fonction de gM dépende du type cellulaire. Finalement, le criblage de partenaires d’interaction du domaine C-terminal de gM identifiés par le système de double-hybride nous a permis de proposer plusieurs candidats susceptibles de réguler la fonction de gM dans la morphogénèse et la propagation de virus. / Herpes Simplex Virus type 1 (HSV-1) is an infectious agent causing herpes, which affects a large population worldwide. Herpes is generally considered a benign disease whose most common form is oral herpes (commonly called "cold sores"), but it can be very serious and cause herpetic blindness and encephalitis, and even be lethal in some cases. The virus can persist throughout life in the body of its host. So far, no treatment can eliminate the virus and no vaccine has proven effective in controlling herpes infections. HSV-1 has a double-stranded DNA genome embedded in an icosahedral capsid surrounded by a lipid envelope. Thirteen viral glycoproteins are located in the envelope and are known or believed to play different roles in different stages of the viral replication cycle, including attachment, entry, assembly, and viral propagation. Among these envelope glycoproteins, glycoprotein M (gM) is the only nonessential glycoprotein but is conserved in all the herpesviridae family. Recently, the homologue of gM in Pseudorabies virus (PRV), another herpesvirus, has been implicated in the final phase of assembly (e.g. the cytoplasmic envelopment) at the trans-Golgi network (TGN) ([1]). However, it was suggested that this does not apply to HSV-1 ([2]). Moreover, unlike its TGN localization in transfected cells, HSV-1 gM localizes to the nuclear membrane and on the perinuclear virions during infection. The objective of the project presented here was to clarify the relationship of the location and function of HSV-1 gM in the context of an infection. In the results reported here, we first describe a specific and active mechanism of nuclear targeting of HSV-1 gM. In early phase of infection, gM is targeted to the nuclear membrane in a virus dependent manner. This occurs before the known reorganization of the TGN induced by the virus and before gM enters the secretory pathway. This active and specific nuclear targeting of gM seemingly does not depend on the functional interaction partners proposed in the literature. These data suggest that nuclear gM could have a new role independent of that in the final envelopment in the cytoplasm. In the second part of the work presented here, we focused iv our efforts on the role of gM in virus assembly in the late phase of infection and define an important functional domain within gM. Our results highlight the importance of the carboxyl-terminal domain of gM in the intracellular transport of gM from endoplasmic reticulum (ER) to Golgi apparatus, in the cytoplasmic envelopment of the capsids and the intercellular spread of the virus. Hence, gM ER export was completely compromised in transfected cells after deletion of its C-terminal tail. Deletion of the gM cytoplasmic tail in mutant viruses resulted in a slight reduction in viral titer and plaque size. The analysis of these mutants by electron microscopy showed an accumulation of nucleocapsids without envelope in the cytoplasm compared to wild-type virus. Interestingly, this phenotype is apparent in BHK cells but not in 143B cells, hinting that the importance of gM may be cell type specific. Finally, screening of interaction partners of C-terminal domain of gM identified by the two-hybrid system allowed us to propose several interesting candidates that may regulate the function of gM in the virus morphogenesis and propagation.

L’élimination des cellules infectées par apoptose constitue un mécanisme de défense antivirale. Les virus de l’herpès simplex (HSV) de type 1 et 2 encodent des facteurs qui inhibent l’apoptose induite par la réponse antivirale. La sous-unité R1 de la ribonucléotide réductase d’HSV-2 (ICP10) possède une fonction anti-apoptotique qui protège les cellules épithéliales de l’apoptose induite par les récepteurs de mort en agissant en amont ou au niveau de l’activation de la procaspase-8. Puisqu’une infection avec un mutant HSV-1 déficient pour la R1 diminue la résistance des cellules infectées vis à vis du TNFα, il a été suggéré que la R1 d’HSV-1 (ICP6) pourrait posséder une fonction anti-apoptotique. Le but principal de cette thèse est d’étudier le mécanisme et le potentiel de la fonction anti-apoptotique de la R1 d’HSV-1 et de la R1 d'HSV-2. Dans une première étude, nous avons investigué le mécanisme de la fonction anti-apoptotique de la R1 d’HSV en utilisant le TNFα et le FasL, deux inducteurs des récepteurs de mort impliqués dans la réponse immune anti-HSV. Cette étude a permis d’obtenir trois principaux résultats concernant la fonction anti-apoptotique de la R1 d’HSV. Premièrement, la R1 d’HSV-1 inhibe l’apoptose induite par le TNFα et par le FasL aussi efficacement que la R1 d’HSV-2. Deuxièmement, la R1 d’HSV-1 est essentielle à l’inhibition de l’apoptose induite par le FasL. Troisièmement, la R1 d’HSV interagit constitutivement avec la procaspase-8 d’une manière qui inhibe la dimérisation et donc l’activation de la caspase-8. Ces résultats suggèrent qu’en plus d’inhiber l’apoptose induite par les récepteurs de mort la R1 d’HSV peut prévenir l’activation de la caspase-8 induite par d’autres stimuli pro-apoptotiques. Les ARN double-brins (ARNdb) constituant un intermédiaire de la transcription du génome des HSV et activant l’apoptose par une voie dépendante de la caspase-8, nous avons testé dans une seconde étude l’impact de la R1 d’HSV sur l’apoptose induite par l’acide polyriboinosinique : polyribocytidylique (poly(I:C)), un analogue synthétique des ARNdb. Ces travaux ont montré qu’une infection avec les HSV protège les cellules épithéliales de l’apoptose induite par le poly(I:C). La R1 d’HSV-1 joue un rôle majeur dans l’inhibition de l’activation de la caspase-8 induite par le poly(I:C). La R1 d’HSV interagit non seulement avec la procaspase-8 mais aussi avec RIP1 (receptor interacting protein 1). En interagissant avec RIP1, la R1 d’HSV-2 inhibe l’interaction entre RIP1 et TRIF (Toll/interleukine-1 receptor-domain-containing adapter-inducing interferon β), l’adaptateur du Toll-like receptor 3 qui est un détecteur d’ARNdb , laquelle est essentielle pour signaler l’apoptose induite par le poly(I:C) extracellulaire et la surexpression de TRIF. Ces travaux démontrent la capacité de la R1 d’HSV à inhiber l’apoptose induite par divers stimuli et ils ont permis de déterminer le mécanisme de l’activité anti-apoptotique de la R1 d’HSV. Très tôt durant l’infection, cFLIP, un inhibiteur cellulaire de la caspase-8, est dégradé alors que la R1 d’HSV s’accumule de manière concomitante. En interagissant avec la procapsase-8 et RIP1, la R1 d’HSV se comporte comme un inhibiteur viral de l’activation de la procaspase-8 inhibant l’apoptose induite par les récepteurs de mort et les détecteurs aux ARNdb. / Elimination of infected cells by apoptosis constitutes an ancestral mechanism of host defense against viral infection. Herpes simplex viruses (HSVs) encode several viral factors to counteract the apoptotic antiviral response. Among them, the R1 subunit of HSV type-2 ribonucleotide reductase (HSV-2 R1, also named ICP10), protects cells by interrupting death receptor-mediated signaling at, or upstream of, caspase-8 activation. Since protection against tumor necrosis factor alpha (TNFα)-induced apoptosis is decreased un cells infected with an HSV type-1 R1 null mutant, it has been proposed that HSV-1 R1 (ICP6) could also possess an antiapoptotic activity. The fundamental goal of this thesis is to better understand the mechanism and the potential of the HSV R1s antiapoptotic activity. In a first study, we investigated the mechanism of the antiapoptotic activity of HSV R1s by using TNFα and Fas ligand (FasL), two death-receptor inducers involved in anti-HSVs immune response. From this work, we report three main findings on the antiapoptotic activity of HSV R1s. First, HSV-1 R1 like HSV-2 R1 has the ability to protect cells against TNFα- and FasL-induced apoptosis. Second, HSV-1 R1 contributes in protecting infected cells against FasL. Third, HSV R1s and procaspase-8 interact in a way that inhibits the dimerization/activation of caspase-8. These results suggest that in addition to counteracting death receptor-induced apoptosis, HSV R1s could inhibit apoptosis induced by other signals that trigger caspase-8 activation during HSV infection. Double-stranded RNA (dsRNA) are viral intermediates notably produced by HSVs and have been shown to induce apoptosis via caspase-8 activation. We tested in a second study whether HSV R1s have the ability to counteract apoptosis triggered by polyriboinosinic : polyribocytidylic acid (poly(I:C)), a synthetic analog of dsRNA that triggers caspase-8 activation. We showed that HSVs infection protect epithelial cells from apoptosis induced by poly(I:C). We established that HSV-1 R1 is essential for the protection of HSV-1-infected cells against poly(I:C)-induced caspase-8 activation. HSV R1s interact not only with procaspase-8 but also with the receptor interacting protein 1 (RIP1). The interaction between RIP1 and HSV-2 R1 inhibits the binding of RIP1 to the Toll/interleukine-1 receptor-domain-containing adapter-inducing interferon β (TRIF), the adaptor of Toll-like receptor 3 that is an extracellular dsRNA sensor, which is required to activate caspase-8 following extracellular poly(I:C) stimulation and TRIF overexpression. Thus, HSV R1s have the ability to inhibit poly(I:C)-induced apoptosis at several levels by preventing caspase-8 dimerization/activation and TRIF RIP1 interaction. This work sheds light on the ability of HSV R1s to manipulate apoptosis. Early during the lytic cycle, protein levels of the cellular inhibitors of caspase-8 as cFLIP drop but HSV R1s accumulate concomitantly and act as a viral inhibitor of apoptosis by binding to procaspase-8 and RIP1 in a way that impairs caspase-8 activation by death-receptors and dsRNA detectors stimulation.

No description available.

Le parvovirus humain Adeno-Associé (AAV) est un Dependoparvovirus qui ne peut accomplir son cycle réplicatif qu’en présence d’un virus auxiliaire tel que l’Adénovirus (AdV) ou le virus de l’Herpès Simplex de type 1 (HSV-1). En absence de virus auxiliaire, l’AAV va persister sous forme épisomale ou intégrée. Cette intégration survient de façon préférentielle dans un locus spécifique, au site AAVS1, présent sur le chromosome 19 du génome humain.Des travaux précédents ont porté sur l’étude du contrôle de la réplication de l’AAV par les facteurs cellulaires de réparation des cassures d’ADN. En particulier, le complexe MRN (Mre11/Rad50/Nbs1), un senseur majeur des cassures de l’ADN double brin (CDB), a été montré comme pouvant inhiber les réplications virales de l’AAV et de l’AdV lors d’une co-Infection. L’AdV est capable de contrer cet effet en induisant la délocalisation et la dégradation de MRN. A l’opposé, MRN participe de façon positive à la réplication de l’HSV-1 et se retrouve localisé dans les centres de réplication viraux (CR) de l’AAV induits par HSV-1. Ceci nous a conduits à explorer plus en détail le rôle de ce complexe sur la réplication de l’AAV en présence d’HSV-1. Les résultats obtenus indiquent, qu’en absence de MRN, la réplication du génome de l’AAV est réduite de façon significative dans des cellules co-Infectées avec le virus HSV-1, sauvage ou muté pour son activité polymérase. Cette diminution est spécifique à l’AAV sauvage car aucune perturbation n’est observée sur la réplication des vecteurs AAV recombinants lorsque MRN est absent. La régulation positive de la réplication de l’AAV par MRN est dépendante de l’activité de pontage de l’ADN exercée par Rad50. De façon intéressante, l’absence de MRN inhibe également de façon significative l’intégration préférentielle de l’AAV au site AAVS1, que ce soit en absence ou en présence d’HSV-1.Ce travail de thèse suggère que le complexe MRN régulerait de façon différentielle la réplication de l’AAV en fonction du virus auxiliaire qui l’accompagne et identifie, pour la première fois, MRN comme un facteur clé pour l’intégration du génome de l’AAV au site AAVS1. / Adeno-Associated Virus (AAV) is a helper dependent Dependoparvovirus that requires co-Infection with adenovirus (AdV) or herpes simplex virus type 1 (HSV-1) to productively replicate. In the absence of the helper virus, AAV can persist in an episomal or integrated form. Integration occcurs preferentially at a specific locus called AAVS1 and based on human chromosome 19.Previous studies have analyzed the DNA damage response induced upon AAV replication to understand how it controls AAV replication. In particular, it was shown that the Mre11-Rad50-Nbs1 (MRN) complex, a major player of the DNA damage response induced by double-Stranded DNA breaks and stalled replication forks, could negatively regulate AdV and AAV replication during co-Infection. AdV counteracts this effect by inducing the delocalization and degradation of MRN. In contrast, MRN favors HSV-1 replication and our previous studies showed that it was recruited to AAV replication compartments that were induced in the presence of HSV-1. In this study we examined the role of MRN during AAV replication induced by HSV-1. Our results indicated that knockdown of MRN significantly reduced AAV DNA replication after co-Infection with polymerase deleted or wild type HSV-1. This reduction was specific of wild type AAV since it did not occur with recombinant AAV vectors. Positive regulation of AAV replication by MRN was dependent on its DNA tethering and nuclease activities. Importantly, knockdown of MRN could also negatively regulate AAV site-Specific integration within the human AAVS1 site, an event which occurred at a significant level during AAV replication induced by co-Infection with HSV-1. Altogether, this work demonstrates that MRN can differentially regulate AAV replication depending on the helper virus which is present and identifies a new function of this DNA repair complex during site-Specific integration of the AAV genome.

[pt] A eletrocoagulação é um método emergente de tratamento de efluentes que combina os benefícios da coagulação, flotação e eletroquímica. Devido à complexidade inerente às operações de uma estação de tratamento de efluentes, é um desafio reagir com rapidez e precisão às condições dinâmicas necessárias para manter a qualidade do efluente. Portanto, esta tese tem como objetivo identificar a condição operacional de uma estação de tratamento de efluentes que adotou a eletrocoagulação para o tratamento de efluentes de panificação. Três condições operacionais baseadas em clarificação do efluente e lodo da reação foram as variáveis-alvo. A tese está dividida em dois ensaios. O primeiro usou sete métodos de seleção de atributos para selecionar as variáveis mais importantes em um determinado conjunto de dados. O desempenho dos modelos de classificação de redes neurais treinados no conjunto de atributos original foi comparado ao desempenho daqueles que foram treinados em um subconjunto curado usando técnicas de seleção de atributos. O modelo que utilizou a seleção de atributos apresentou o melhor desempenho (F1-score = 0,92) e uma melhoria de mais de 30 por cento na prevenção de falsos positivos. A segunda contribuição trouxe um modelo que poderia detectar o comportamento anômalo do processo usando apenas imagens coloridas da superfície do efluente obtidas através de dois módulos de câmera de tamanho pequeno. O desempenho de vários métodos, incluindo MLP, LSTM, SVM e XGBoost foi avaliado. O modelo LSTM superou os outros em termos de Precisão (84,620 por cento), Recall (84,531 por cento) e F1-score (84,499 por cento), mas o modelo XGBoost vem em segundo lugar com Precisão (83,922 por cento), Recall (82,272 por cento) e F1-score (83,005 por cento). / [en] Electrocoagulation is an emerging wastewater treatment method that combines the benefits of coagulation, flotation, and electrochemistry. As a result of the inherent complexity of processes associated with wastewater treatment plants, it is difficult to respond swiftly and correctly to the dynamic circumstances that are necessary to ensure effluent quality. Therefore, this thesis aims to identify the operational condition of a wastewater treatment plant that has adopted electrocoagulation for treating bakery wastewater. Three operational conditions based on effluent clarification and reaction sludge were the target variables. The thesis is divided into two essays. The first endeavor used seven feature selection methods to select the most important features in a given dataset. The performance of neural network classification models trained on the original feature set was compared to the performance of those that were trained on a subset of features that had been curated using feature selection techniques. The model that utilised feature selection was found to have the best performance (F1-score = 0.92) and an improvement of more than 30 percent in preventing false positives. The second contribution brought a model that could detect anomalous process behavior using only wastewater surface color images from two small-size camera modules. The performance of various methods, including MLP, LSTM, SVM, and XGBoost was assessed. The LSTM model outperformed the others in terms of macro average Precision (84.620 percent), Recall (84.531 percent), and F1-score (84.499 percent), but the XGBoost model comes closely in second with Precision (83.922 percent), Recall (82.272 percent), and F1-score (83.005 percent).

Background. Head and neck cancers (HNC) are among the most common malignancies worldwide, and about 90–92% of oral neoplasias are oral squamous cell carcinomas (OSCC). Alcohol and tobacco consumption have been recognized as the main risk factors for OSCC development. Oncogenic viruses, such as human papillomavirus (HPV) or Epstein-Barr virus (EBV), as well as genetic alterations may also contribute to tumour formation.  Aims. To study the prevalence of HPV, EBV, Herpes simplex type-1 (HSV-1), and HPV-16 and their integration status as well as the molecular mechanisms that can serve as a basis for the development of OSCC. Results. In Paper I we reported a statistically significant increase in the prevalence of HPV-16 in oral epithelial dysplasia (OED) and OSCC samples compared to controls. A statistically significant increase was also seen in integrated HPV-16 compared to episomal viral forms when comparing OED and OSCC samples. Paper II reported the detection of HSV-1 in 54% of healthy samples, in 36% of oral leukoplakia samples, and 52% of OSCC samples. However, these differences were not statistically significant. In Paper III we reported a statistically significant increase in the detection of HPV-positive samples when comparing nested polymerase chain reaction (PCR) with single-PCR results in OSCC and fresh oral mucosa. Paper IV reported that the highest prevalence of HPV (65%) was seen in Sudan, while an HSV-1 prevalence of 55% and an EBV prevalence of 80% were seen in the UK. Finally, Paper V reported that the mRNA levels of Bcl-2, keratin 1, keratin 13, and p53 were significantly lower and that the level of survivin was significantly higher in the OSCC samples of the toombak users than in their paired control samples. Significant downregulation in keratin 1 and keratin 13 expression levels was found in the OSCC samples of the non-toombak users relative to their normal control samples. Conclusion. HPV-16 integration was increased in oral epithelial dysplasia and OSCC compared to normal oral mucosa. Nested PCR is a more accurate method of establishing HPV prevalence in samples containing low copy numbers of HPV DNA. HPV and EBV may be a risk factor in OSCC development. Our findings confirmed the role of survivin in OSCC carcinogenesis and survivin might be interesting as a biomarker to be monitored. The results presented here provide both clinical and biological insights that will bring us closer to the goal of managing this disease and improving treatment and outcomes for future patients.

This paper describes the "strucplot" framework for the visualization of multi-way contingency tables. Strucplot displays include hierarchical conditional plots such as mosaic, association, and sieve plots, and can be combined into more complex, specialized plots for visualizing conditional independence, GLMs, and the results of independence tests. The framework's modular design allows flexible customization of the plots' graphical appearance, including shading, labeling, spacing, and legend, by means of "graphical appearance control" functions. The framework is provided by the R package vcd.

Herpes simplex virus (HSV) infection of the cornea leads to a blinding immuno-inflammatory condition of the eye also called stromal keratitis (SK). SK immunopathology is characterized by the infiltration of CD4+ T cells of Th1 phenotype as well as the development of new blood vessels into the normally avascular cornea. Studies in mouse models of SK have firmly established the role of CD4+ T cells, and particularly of Th1 phenotype, as the principal mediators of SK immunopathology. However, with the recent discovery of IL-17A and Th17 cells, the role of this cytokine as well as Th17 cells remains to be further defined. Recently it was shown that the normal cornea expresses VEGF-A, however its biological activity is impeded by its binding to a soluble form of VEGF-A receptor-1 (sVEGFR-1). Past studies have implicated the role of vascular endothelial growth factor-A (VEGF-A) in HSV induced corneal angiogenesis, however the source of VEGF-A as well as molecular mechanisms, particularly in the context of VEGF-A/sVEGFR-1 balance during HSV infection, are poorly understood. The first part of this dissertation (I) reviews past literature on HSV induced corneal SK immunopathology. It focuses on the understanding of HSV-1 induced events that particularly results in corneal angiogenesis as well as tissue damage mediated by different type of cells as well as their secreted products. The next three parts (II-IV) focus on the mechanisms of HSV induced corneal angiogenesis as well as the relative role of Th1 and Th17 cells in SK immunopathology. Results in part II focuses on the relative role of IFN-γ/IL-17 as well as Th1/Th17 cells in HSV induced corneal immunopathology. The third section evaluate the significance of VEGF-A/sVEGFR-1 balance in HSV induced corneal neovascularization. Results in part IV focus on the role of IL-17A in altering the balance between VEGF-A and sVEGFR-1 post ocular HSV infection and subsequent corneal angiogenesis. Collectively these studies identified novel mechanisms by which HSV infection of the cornea leads to the development of angiogenesis as well as corneal tissue damage and subsequent SK immunopathology, the most common cause of infectious blindness in the Western World.

Most oral squamous cell carcinoma (OSCC) is believed to develop via a multistep process of cumulative gene damage in epithelial cells. Increasing incidence of OSCC and evidence that traditional risk factors may not be responsible directed us to investigate the prevalence of virus in pre- and malignant samples.The integration of the DNA from human papillomavirus (HPV), Epstein-Barr virus (EBV), and Herpes simplex (HSV) into the human genome is associated with the expression of oncogenes and the down-regulation of tumor-suppressor genes in OSCC carcinogenesis. This thesis compared samples from India and Sudan, two countries on two continents having a documented high incidence of oral cancer, with specimens from Sweden, with its known low incidence of oral cancer. Each region has, in addition to smoking, a unique non-smoked tobacco habits with documented carcinogenic effects. These countries also typify areas of low and high socioeconomic living conditions with their expected impact on disease development. The study populations were selected from tobacco users and nonusers with OSCC, oral sub-mucous fibrosis (India), oral lichen planus (Sweden), oral leukoplakia with and without dysplasia and snuff-induced lesions (Sweden and Sudan). An expedient method was developed for extracting DNA from old formalin-fixed and paraffin-embedded biopsies. The prevalence of HPV, EBV, and HSV was investigated using PCR/DNA sequencing and southern blot hybridization analysis. We found HPV and EBV to be most prevalent in samples of tissue characterized as normal, with decreasing prevalence in dysplastic and malignant lesions. This intriguing finding that prevalence decreases as neoplastic development proceeds warrants further investigation. Our data do not at first sight support the conclusion that viruses and tobacco use jointly interact with cell mechanisms in the development of oral cancer.

Le virus Herpes Simplex de type 1 (HSV-1) possède un mode d'infection particulier dit bimodal. Il peut soit se répliquer de manière active lors d'une phase dite lytique soit migrer dans les neurones et rester en latence. Il peut réactiver pour rétablir une infection lytique. Une protéine virale majeure dans la réactivation de HSV-1 est ICP0. C'est une protéine nucléaire à activité E3 ubiquitine ligase, qui possède la particularité d'induire la dégradation par le protéasome de plusieurs protéines centromériques constitutives, ce qui provoque une déstabilisation du centromère interphasique. Mon équipe a découvert une réponse cellulaire à l'instabilité centromérique, induite par la protéine ICP0, et nommée iCDR (pour interphase Centromere Damage Response.). L'objectif général de ma thèse est de déterminer les modifications structurales que subissent les centromères endommagés par ICP0 à l'origine de l'iCDR et probablement de la réactivation. J'ai pu démontrer qu'ICP0 affectait toute la structure protéique étroitement associée aux centromères durant l'interphase. Suite à ces résultats, j'ai pu démontrer, par des analyses de digestion de chromatine à la nucléase microccocale (MNAse), que l'occupation nucléosomique de la chromatine centromérique suite à l'activité d'ICP0 était affectée de façon significative. Une étude in vivo effectuée à partir de tissus nerveux provenant de souris infectées de manière latente, a permis de démontrer une co-localisation entre les génomes HSV-1 latents et les centromères. Cette co-localisation est associée à une répression transcriptionnelle du virus. Les résultats de ma thèse montrent donc que les effets d'ICP0 sur la déstabilisation des centromères sont en relation avec un rôle de ces centromères durant la latence. Ceci suggère fortement une implication de la déstabilisation des centromères dans le processus de réactivation contrôlé par ICP0.