In this thesis, the vital cell functions performed by integral membrane proteins (IMPs) are briefly discussed. Such proteins are under-represented in most protein studies due to the hydrophobic nature of IMPs, which seriously complicate their solubilization, sample handling, preparation, separation and analysis. Conventional analytical techniques include for example matrix-assisted laser desorption/ionization mass spectrometry (MALDIMS), capillary electrophoresis (CE) and reversed phase high-performance liquid chromatography (RP-HPLC). Presented here are methods and protocols, which have been developed especially for IMP and hydrophobic peptide analysis, using the abovementioned techniques. The fluorinated organic solvent hexafluoroisopropanol (HFIP) has previously been shown beneficial as an additive for solubilization of hydrophobic analytes, which are poorly soluble in commonly used organic solvents or water. In Papers I-IV, HFIP is successfully exploited as solvent for the investigated IMPs and peptides. The simple fabrication and the focusing effect of a new structured MALDI target plate are presented in Paper I. This target plate contains concentrating sample spots, specifically designed to provide increased sensitivity for hydrophobic protein and peptide MALDI-MS analysis. When replacing a regular steel target with this new structured MALDI plate, more than a five-fold increase in average sensitivity is achieved for HFIP solubilized hydrophobic peptides. The full-length IMP bacteriorhodopsin (BR) and a cyanogen bromide digest thereof are used as model samples for the development of sample handling procedures in Paper II, and the peptides were used for evaluation of the MALDI-target plate in Paper I. Furthermore, the CE separation of the peptides, fractionation onto the structured MALDI plate and following MS analysis is presented in Paper III. Nine of the ten theoretical BR peptides were detected using this method. A protocol for the purification and analysis of chloroplast membrane proteins from the green macroalga Ulva lactuca has been described in Paper IV. The highest protein yield was achieved when proteins were extracted in HFIP, directly from the chloroplasts. The MALDI-MS analysis of samples with and without previous RP-HPLC fractionation revealed proteins with molecular weights ranging between 1 and 376 kDa. In Paper V, a closed-open-closed CE system is presented, containing an open microchannel for off-line MALDI detection. The electroosmotic flow and band broadening of this system has been evaluated. / QC 20100916

Paper and cellulosic materials hold a good promise of being candidates for flexible packaging materials provided suitable barrier properties such as water repellence and grease resistance are imparted to them. One of the methods to achieve these objectives is to surface modify paper/cellulose by applying thin fluorocarbon coatings on the surface. Fluorocarbon thin films produced by plasma enhanced chemical vapor deposition (PECVD) offer several advantages over the films produced by conventional polymerization means. Plasma deposited films are pinhole-free, chemically inert, insoluble, mechanically tough, thermally stable and highly coherent and adherent to variety of substrates. In this work, we investigate the use of PECVD technique to produce barrier films on paper and cellulosic materials. These films, with composition and properties not much different from PTFE, repel water and act as a good barrier to lipophilic materials. Two different monomers, pentafluoroethane (PFE; CF3CHF2) and octafluorocyclobutane (OFCB; C4F8), were investigated and compared in terms of deposition rates and final film properties. Various analytical techniques (XPS, FT-IR, SEM, Ellipsometry, Contact Angle Goniometry, etc.) were used to characterize the fluorocarbon films. The fluorocarbon coated paper exhibited hydrophobic character as evidenced by high water contact angles. Although the films allow water vapor diffusion, the films are hydrophobic and are not wetted when liquid water contacts these layers. Based on various thickness of these films deposited on surface of cellulose, there was a minimum PFE film thickness required to achieve a stable hydrophobic behavior. The fluorocarbon films investigated in this work also exhibited good resistance to lipophilic materials (e.g. oils, fatty acids, etc.). While techniques such as oleic acid penetration and TAPPI "oil-kit" test are commonly used in paper industry to qualitatively test the grease barrier properties of paper/cellulose, this work attempts to quantify the grease barrier properties of fluorocarbon coated paper using techniques such as magnetic resonance imaging (MRI) and quartz crystal microbalance (QCM). Finally, the feasibility of deposition of dual layer films by PECVD was investigated using PFE and n-isopropylacrylamide (NIPAAM) as precursors for applications in barrier packaging and printing.

Biotreatment for air pollution control can generally be categorized as biofilter, bioscrubbing and biotrickling filter systems. Generally, biotreatments could be effective and more economical treatment for containment waste gas if designed and operated properly. A two stage down-flow biofilter (2.18 m in height and 0.4 m¡Ñ0.4 m in cross-sectional area) was constructed to develop a biofilter packed only with fern chips for the removal of air-borne propylene glycol monomethyl ether acetate (PGMEA). Both stages were packed with fern chips of 0.30 m in height and 0.40 m ¡Ñ0.40 m in cross section. Fern chips could avoid the shortcomings of traditional media, such as compaction, drying, and breakdown, which lead to the performance failure of the biofilters. In addition, the fern chip medium has the following merits: (1) simplicity in composition, (2) low pressure drop for gas flow (< 20 mmH2O m-1), (3) simple in humidification, nutrient addition, pH control, and metabolite removal, (4) economical (USD$ 174 ¡V 385 m-3), and (5) low weight (wet basis around 290 kg m-3). Results indicate that with operation conditions of media moisture content controlled in the range of 50 ¡V 74%, media pH of 6.5 ¡V 8.3, EBRT (empty bed retention time) of 0.27 ¡V 0.4 min, influent PGMEA concentrations of 100 to 750 mg m-3, volumetric organic loading of < 170 g m-3 h-1, and nutrition rates of Urea-N 66.0 g m-3.day-1, KH2PO4-P 13.3 g m-3.day-1 and milk powder 1.0 g m-3 day-1, the fern-chip packed biofilter could achieve an overall PGMEA removal efficacy of around 94%. Instant milk powder or liquid milk was essential to the good and stable performance of the biofilter for PGMEA removal. An activated sludge aeration basin (20 cm i.d., 140 cm height) equipped with either a coarse air diffuser (a plastic pipe perforated with 56 orifices of 2 mm in diameter) or a fine diffuser (porous plastic type with 100-micrometer pores) was utilized to treat an air-borne hydrophobic VOC (toluene, 700 ¡V 800 mg m-3). The purposes of this study were to test the influences of both MLSS and diffuser type on the VOC removal efficiency. Results show that higher MLSS (mixed liquor suspended solids) such as 10,000 ¡V 40,000 mg L-1 in the mixed liquor did not enhance greatly the transfer and removal of the introduced toluene. Instead, activated sludge basins with a normal MLSS (e.g., 2,000 ¡V 4,000 mg L-1) in the mixed liquor and an efficient gas diffusion system with volumetric VOC transfer coefficient of around 10 ¡V 15 h-1 can be used for the removal of hydrophobic VOCs from the introduced gas. For achieving a removal of over 95% of the introduced toluene or similar hydrophobic VOCs, commercial air diffusers for aerobic biological wastewater treatment basins can be used with a submerged liquid depth of over 0.40 m over the diffusers and an aeration intensity (air flow rate/basin cross-sectional area) of lower than 5.0 m3 m-2 h-1.

Amyotrophic lateral sclerosis (ALS) is a devastating disease. Currently, there is no cure for this disease, and effective treatment strategies are greatly needed. Calpain activation plays a major role in the motor neuron degeneration that causes ALS. Therefore, therapeutic strategies can inhibit calpain activity in the central nervous system (CNS) have great clinical potential. The calpain inhibitors AK295 and MDL-28170 have been demonstrated to be neuroprotective in animal models of neurological injury, and should have great potential to treat ALS; however delivery problems have hindered their clinical success. Therefore, development of a new strategy that can locally deliver the calpain inhibitors to the central nervous system could significantly improve the treatment of ALS. The objectives of my thesis research were (1) to develop high molecular weight polyketals that provide sustained release properties for hydrophobic molecules, (2) to formulate calpain inhibitor-encapsulated polyketal microparticles which have a release half life of one month in vitro, (3) and to evaluate the performance of polyketal microparticles for delivering calpain inhibitors to the spinal cord in vivo. In completing these specific aims, we have developed biodegradable polymeric microparticles for the delivery of calpain inhibitors, AK295 and MDL-28170 to treat ALS. The results of calpain assays showed that both AK-PKMs and MDL-PKMs maintained most of their inhibitory activities even after the robust emulsion process. The in vitro release profile of MDL-28170 in MDL-PKMs showed that 50 % of the drug was released in the first 30 days. Experiments using dye-encapsulated microparticles showed that polyketal microparticles (1-2 ìm) are not easily cleared in the neutral physiological environment and can have potential to continuously release drug from the injection sites in the spinal cord. The efficacy of calpain inhibitor-encapsulated PKMs were studied by evaluation the behavior and survival of SOD1G93A rats, a genetic rat model for ALS. We observed the trend toward improvements in grip strength and rotarod performance in the first two months from the AK-PKMs treated group, however, further improvements are needed to enhance their in vivo efficacy.

The framework of this thesis aims to fabricate materials, which change surface characteristics in response to environmental conditions. This response may be employed to improve material characteristics as adhesion, wettability, interaction with cells etc. The mixed brushes introduce adaptive and switching behavior in different surrounding media. Two main approaches were employed to fabricate mixed polymer brushes: &amp;quot;grafting to&amp;quot; and &amp;quot;grafting from&amp;quot;. Mixed PS/PVP polymer brushes were synthesized via step-by-step grafting of these two polymers from polyamide (PA) surfaces. NH3 plasma was used for the introduction of amino and OH functionalities on PA surfaces with following attachment of azo initiator of radical polymerizaton. The mixed brushes prepared on the surface of PA textiles combine both the switching effect and effect of composite surface (i.e. micrometer scale roughness) which substantially amplifies the switching range. Mixed polymer brushes prepared from P(S-b-2VP-b-EO) and P(S-b-4VP) block copolymers were grafted to both the flat surface of Si wafers and to the surface of silica nanoparticles via quaternization reaction of the pyridine nitrogen. This one step grafting technique has a substantial advantage over the multistep grafting of mixed polymer brushes. We have demonstrated that combination of the two level hierarchical organization of polymer films at macroscopic and nanoscopic levels resulted in the formation of self adaptive surfaces switchable in controlled environment from ultra-hydrophobic to hydrophilic energetic states. The PFS/PVP mixed brush was grafted onto the pre-treated PTFE surface (plasma etching) with the needle like topography. The size of vertical needles was at micron scale. If the brush is switched to the hydrophobic state the layer has shown a unique ultra-hydrophobic behavior (complete non-wetting) with the contact angle approaching value of 160o. If the mixed brush was switched into the hydrophilic state the surface became completely wetted due to the capillary forces in the pores formed by the needle like structure. Thus, the surface can be either highly wettable or completely non-wettable with the self cleaning properties.

Oligomers and polymers based on functionalized Rf-amides were successfully synthesized for the fabrication of hydrophobic surfaces with either linear or network structure. Firstly, new functionalized Rf-amides (RfCONH-, Rf is a perfluoroalkyl segment) were developed in most cases by a one step reaction and a simple work-up procedure. The reaction behaviors of synthesized Rf-amides in polyreactions were well understood. New fluorinated oligoester polyols, blocked IPDI's, and end-hydroxyl terminated oligo(urea urethane)s have been synthesized, the detail structures and properties are well understood. These materials could be suitable components of powder coatings. On the other hand, the end-hydroxyl terminated oligo(urea urethane)s could be used as reactive additives in high solid content and water-borne coatings. Hydrophobic smooth surfaces based on linear polymers, poly(urea urethane)s and alternating MI copolymers, containing fluorinated side groups were successfully constructed. The attachment of fluorinated side groups into polymers can dramatically alter the surfaces of corresponding polymers from more hydrophilic to hydrophobic due to the enrichment of fluorinated side groups on the top of the surface. The backbone configuration, the polarity of backbones, and the thermal treatment on surfaces can influence the surface properties of corresponding materials. Finally, hydrophobic surfaces of cross-linked polyurethanes as model top coatings were constructed under melt condition at high temperature (180 and 190 oC) using the combination of fluorinated oligouretdiones and non-fluorinated oligoester polyols. It was found that the hydrophobicity of resulting cured films is a matter of the competition between the formation of cross-linking network and the segregation of fluoromoieties on the top of the surface.

<p>Recombinant strategies are today dominating in thedevelopment of modern subunit vaccines. This thesis describesstrategies for the production and recovery of protein subunitimmunogens, and how genetic design of the expression vectorscan be used to adapt the immunogens for incorporation intoadjuvant systems. In addition, different strategies fordelivery of subunit vaccines by RNA or DNA immunization havebeen investigated.</p><p>Attempts to create general production strategies forrecombinant protein immunogens in such a way that these areadapted for association with an adjuvant formulation wereevaluated. Different hydrophobic amino acid sequences, beingeither theoretically designed or representing transmembraneregions of bacterial or viral origin, were fused on gene leveleither N-terminally or C-terminally to allow association withiscoms. In addition, affinity tags derived from<i>Staphylococcus aureus</i>protein A (SpA) or streptococcalprotein G (SpG), were incorporated to allow efficient recoveryby means of affinity chromatography. A malaria peptide, M5,derived from the central repeat region of the<i>Plasmodium falciparum</i>blood-stage antigen Pf155/RESA,served as model immunogen in these studies. Furthermore,strategies for<i>in vivo</i>or<i>in vitro</i>lipidation of recombinant immunogens for iscomincorporation were also investigated, with a model immunogendeltaSAG1 derived from<i>Toxoplasma gondii</i>. Both strategies were found to befunctional in that the produced and affinity purified fusionproteins indeed associated with iscoms. The iscoms werefurthermore capable of inducing antigen-specific antibodyresponses upon immunization of mice, and we thus believe thatthe presented strategies offer convenient methods for adjuvantassociation.</p><p>Recombinant production of a respiratory syncytial virus(RSV) candidate vaccine, BBG2Na, in baby hamster kidney(BHK-21) cells was investigated. Semliki Forest virus(SFV)-based expression vectors encoding both intracellular andsecreted forms of BBG2Na were constructed and found to befunctional. Efficient recovery of BBG2Na could be achieved bycombining serum-free production with a recovery strategy usinga product-specific affinity-column based on a combinatoriallyengineered SpA domain, with specific binding to the G proteinpart of the product.</p><p>Plasmid vectors encoding cytoplasmic or secreted variants ofBBG2Na, and employing the SFV replicase for self-amplification,was constructed and evaluated for DNA immunization against RSV.Both plasmid vectors were found to be functional in terms ofBBG2Na expression and localization. Upon intramuscularimmunization of mice, the plasmid vector encoding the secretedvariant of the antigen elicited significant anti-BBG2Na titersand demonstrated lung protective efficacy in mice. This studyclearly demonstrate that protective immune responses to RSV canbe elicited in mice by DNA immunization, and that differentialtargeting of the antigens expressed by nucleic acid vaccinationcould significantly influence the immunogenicity and protectiveefficacy.</p><p>We further evaluated DNA and RNA constructs based on the SFVreplicon in comparison with a conventional DNA plasmid forinduction of antibody responses against the<i>P. falciparum</i>Pf332-derived antigen EB200. In general,the antibody responses induced were relatively low, the highestresponses surprisingly obtained with the conventional DNAplasmid. Also recombinant SFV suicide particles inducedEB200-reactive antibodies. Importantly, all immunogens inducedan immunological memory, which could be efficiently activatedby a booster injection with EB200 protein.</p><p><b>Keywords</b>: Affibody, Affinity chromatography, Affinitypurification, DNA immunization, Expression plasmid, Fusionprotein, Hydrophobic tag, Iscoms, Lipid tagging, Malaria,Mammalian cell expression, Recombinant immunogen, RespiratorySyncytial Virus, Semliki Forest virus, Serum albumin,<i>Staphylococcus aureus</i>protein A, Subunit vaccine,<i>Toxoplasma gondii</i></p>

Denna kandidatuppsats undersöker framtagningen av ett bakteriellt cellulosamaterial (BC-material), samt undersöker om materialets vattenavvisande egenskaper kan förbättras för att kunna möjliggöra användning som textilt material. Arbetet grundar sig i det faktum att BC- materialet är av en hydrofil karaktär, något som den brittiska designern Suzanne Lee utryckt vara ett problem för dess användningsmöjligheter. Arbetet behandlar en litteraturstudie av BC, vilken ligger till grund för en experimentel del där odling, vattenavvisande beredningar och vattenavvisande tester utförts. Gällande BC-produktion och materialframtagning har faktorer som pH-värde, temperaturförhållanden, och recept visat sig påverka cellulosaproduktionen. Ett varmare temperaturförhållande på 30°C jämfört med rumstemperatur (20- 22°C) har uppvisat bättre cellulosatillväxt. Detsamma gäller även för användandet av äppelcidervinäger i odlingmediumet, vilket uppvisat positiva resultat. Testerna av det framtagna BC-membranet har för det första kunnat bekräfta dess påstådda hydrofilitet. Vidare har även de vattenavvisande behandlingarna visat positiva resultat, även om användarmöjligheterna för materialet fortfarande anses vara begränsade inom det textila området. En ökning av kontaktvinkeln från 40,76° till 96,98° uppvisades efter att en behandling med en syntetisk vaxpolymer applicerats. Denna ökning på drygt 100 % skapade en kontaktvinkel över 90°, vilket teoretiskt betyder att materialets karaktär gått från hydrofilt till hydrofobt. Ett likvärdigt resultat uppvisades även efter en behandling med en vaxdendrimer. Materialet uppvisade dock tydliga resultat på att absorbera vatten vid längre tid av blötläggning, oavsett om det behandlats eller ej. / This bachelor thesis is investigating the development of a material based on bacterial cellulose (BC), as well as examine and test the material's hydrophobic properties. This is made in order to improve its user possibilities as a textile material. The motive is based on the fact that BC- materials have a hydrophilic nature, something that the British designer Suzanne Lee expressed as a problem for its user possibilities. The thesis process a literature study of BC, which is used for an experimental study where cultivation, water repellent treatments and water repellent tests are performed. Regarding BC-production and material creation, factors as pH-levels, temperature conditions and the recipes has shown to affect the cellulose production. The cellulose levels occurred to increase during a warmer condition at 30 °C compared to room temperature (20-22°C), both conditions where used for the cultivation. The same positive results also occurred when apple cider vinegar was used in the cultivation bath. The tests on the developed BC-membrane, initially confirmed its alleged hydrophilic nature. Furthermore, positive results occurred for the water repellant-treated materials, even if the user possibilities still is considered to be limited in the textile field. The contact angle increased from 40.76 ° to 96.98 ° on the material treated with a synthetic wax polymer, which results in a 100% increase. The angle of 90°, theoretically means that the character of the material changed from hydrophilic to hydrophobic. Similar results also occurred after treatment with a wax dendrimer. The material, however, showed significant results in absorbing water when subjected for a longer time of soaking, whether it was treated or not.

Hyaluronic acid (HA) is one of the primary chemical building blocks of the extracellular matrix and thus is an attractive material for biomedical applications. FDA approved HA-based materials are available as dermal fillers, joint viscosupplements, vitreous substitutes, and abdominal adhesion barriers. The engineering of new HA-based materials and applications is an active area of research. Here we develop several new types of HA-based hydrogels with unique and useful properties. To address the challenge of delivering hydrophobic drugs from hydrophilic hydrogel matrices we have grafted HA hydrogels with [Beta]-cyclodextrin to create hydrogels capable of binding poorly water soluble drugs. To create HA hydrogels with unique anisotropic swelling behavior we have developed a dual-crosslinking technique in which a super-swelling chemically crosslinked hydrogel is patterned with low-swelling photocrosslinked domains. When this dual-crosslinked hydrogel is swelled it contorts into a new shape because of differential swelling among photopatterned regions. To address the challenge of creating hydrogel scaffolds with biomimetic branched porosity we have invented a "crystal templating" technique. This technique grows dendritic crystals throughout a biopolymer solution, crosslinks the biopolymer around the crystals, and washes the crystals away to yield a hydrogel with a dendritic macroporous network. Lastly, we invented a method for patterning a substrate with a microarray of hydrogel compartments. A microarray of living cells is obtained when cells are seeded on the hydrogel patterned substrate. This method addresses the need for an inexpensive, simple method for obtaining living cell microarrays that does not require clean room labs and lithographic expertise. Each of these new materials were based on hyaluronic acid hydrogels but the methods are generalizable to hydrogels of other polymers too. In conclusion, the novel methods in this dissertation are a significant contribution to the engineering of HA-based materials. / text

It has long been observed that salts affect proteins in a variety of ways, yet comprehensive explanations for different salt effects are still lacking. In the work presented here, the effect of salts on proteins has been investigated through three different effects: the hydrophobic effect; their conformational stability; the hydrogen bonding network of water in a protein’s hydration shell. UV-vis absorbance and fluorescence spectroscopy were used to monitor changes in two model systems, the phenol-acetate contact pair and the model enzyme ribonuclease t1. It was shown that salts affect the hydrophobicity of the contact pair according to their charge density, induced image charges play an important role in the observed salt-induced increase of ribonuclease t1 stability, and that salts affect ribonuclease t1 activity through modulation of the hydrogen bonds of water in the enzyme’s hydration shell. This work contributes a greater understanding of the effect of salts on proteins.