Cette thèse concerne l'étude de la dynamique d'impacts de gouttes, dans des situations de friction réduite entre le substrat solide et la goutte liquide. Cette diminution de friction s'est faite au moyen d'un film d'air inséré entre le liquide et le solide. Il existe plusieurs stratégies permettant l'existence de ce film d'air : la première est d'utiliser le phénomène de caléfaction, ou effet Leidenfrost : un liquide approché d'une surface chauffée au delà d'une température critique s'évapore suffisamment rapidement pour pouvoir léviter sur sa propre vapeur, et ainsi être isolé de la surface solide. Dans certaines conditions, les surfaces super-hydrophobes micro-texturées permettent au liquide de rester dans un état "fakir", c'est à dire de n'être en contact qu'avec le sommet de micro-piliers, le reste du liquide demeurant au dessus d'un coussin d'air. Enfin, il a également été constaté que l'écoulement d'air engendré par le mouvement d'une surface solide peut induire une force de portance sur une goutte, et ainsi lui permettre de léviter au dessus de cette surface / In this thesis we study the dynamic of drop impacts, in situations of low friction between the liquid and the solid surface. This low friction can be obtained thanks to an air cushion trapped between the liquid and the solid, which can be achieved by several ways. The first one is the Leidenfrost effect : when a liquid is moved close to a hot surface, the evaparation rate can be sufficient make liquid levitate on its own vapour. In certain conditions, onto micro-patterned super-hydrophobic surfaces, a drop can be in a "fakir" state, which means that the contact is limited to the top of micro-pillars, the rest of the liquid is at the top of an air cushion. Finally, we also observed that the air flow due to a moving surface can generate a lift force which can permit the levitation of the drop

Cette étude concerne la physique des écoulements convectifs résultant d’une instabilité d’évaporation de fluides binaires. Ce problème a de nombreuses applications, l’enrobage par centrifugation, le dépôt de films, les caloducs, etc, pour lesquels le changement de phase et la convection jouent un rôle prépondérant dans la conception et la qualité des procédés. Le système physique étudié est un mélange liquide sous sa propre vapeur, confiné par deux plaques conductrices de chaleur et des bords latéraux isolants. Les plaques sont utilisées pour appliquer un gradient thermique. Aucun gradient de concentration n’est imposé au système. Ces gradients sont induits par les différentes vitesses d’évaporation des composés. Dans ce système, il est important de comprendre comment la dynamique des fluides et les transferts de masse et de chaleur entrent en compétition pour la formation de structures. Le principal objectif de ce travail est d’identifier les conditions pour que le système évolue d’un état conductif vers un état de convection lorsque le gradient vertical de température dépasse une certaine valeur critique.Dans le système, la convection s’installe par trois mécanismes distincts : évaporation, gradients de densité et gradients de tension interfaciale. Trois forces convectives s’opposent aux effets de diffusion qui tendent à garder le système en état conductif. Le seuil d’apparition de la convection dépend de quelques variables, comme les dimensions du contenant, les propriétés thermophysiques des phases liquide et vapeur, la fraction massique, et les caractéristiques de perturbations. L’effet de chacune de ces variables sur le seuil est étudié en présence ou non de gravité.Pour représenter la physique, un modèle mathématique non linéaire complet est développé, basé sur les conservations de quantité de mouvement, d’énergie et de masse dans chaque phase avec les conditions aux limites appropriées. Le fluide binaire est composé de deux alcools légers comme l’éthanol et le sec-butanol. Dans les équations du modèle, la masse volumique ainsi que la tension interfaciale sont fonctions à le fois de la température et de la concentration. Pour la recherche du seuil de transition, les équations sont linéarisées autour d’un état de base connu. Dans notre cas, il s’agit de l’état conductif. Le système d’équations linéaires résultant est résolu par une méthode de collocation spectrale Chebyshev.Nous obtenons quatre résultats principaux. Premièrement, dans un système multi-composants sans gravitation, une instabilité n’apparaît que lorsque le système est chauffé du côté de la phase vapeur contrairement à un système mono-composant. Cela implique que, si on souhaite éviter les instabilités, il vaut mieux un apport de chaleur par la phase liquide en cas de processus d’évaporation en couches minces ou en micro-gravité.Deuxièmement, en présence de gravité, un système multi-composants peut devenir instable quelle que soit la direction du chauffage. Si la convection thermique est négligeable, alors nous montrons que le chauffage par la phase vapeur est la configuration la plus instable. Sinon, les deux modes de chauffage sont à même de produire une instabilité. Ce résultat implique que le gradient thermique appliqué doit être inférieur à une valeur seuil pour éviter les instabilités quelle que soit la direction du chauffage.Troisièmement, lorsque l’instabilité apparaît en absence de gravité, des structures n’apparaitront pas dans le cas de fluide pur mais apparaitront dans le cas d’un fluide multi-composants. De même, des structures apparaitront en présence de gravité en fonction du facteur d’aspect du confinement. Les facteurs d’aspect peuvent être choisis pour éviter des structures multi-cellulaires même en cas d’apparition d’instabilités durant l’évaporation.Enfin, des structures oscillantes ne sont pas prédites de façon générale malgré les effets opposés des convections solutale et thermique dans le problème d’évaporation. / This study focuses on understanding the physics of the convective flow resulting from evaporative instability in binary mixtures. This problem has wide applications in spin coating, film deposition, heat pipes, etc. where phase change and convection play a very important role in the design process and also final quality of the product. The physical system of interest consists of a liquid mixture underlying its own vapor sandwiched between two conducting plates with insulated sidewalls in a closed container. The conducting plates are used to apply a vertical temperature gradient while there is no applied concentration gradient in the system. Concentration gradients are induced by the different evaporation rate of the components. In this system it is important to understand how the fluid dynamics and the heat and mass transfer interact competitively to form patterns. The main goal of this work is to identify the conditions for the system going from the conductive no-flow state to a convection state when the applied vertical temperature gradient exceeds a certain value called the critical value.In the system convection arises due to three distinct phenomena; evaporation, density gradients, and interfacial tension gradients. These convective forces are opposed by the diffusion effects that try to keep the system in the conductive no-flow state. The onset point depends upon several variables such as the dimensions of the container, thermo-physical properties of both liquid and vapor phases, mass fraction, and the characteristic of the disturbance given to the system. The effects of each of these variables on the onset point are investigated both in the presence and in the absence of gravity. To represent the physics a complete non-linear mathematical model is developed including momentum, energy, and mass balances in both phases with appropriate boundary conditions. The binary mixture is assumed to be made up of two low weight alcohols such as ethanol and sec-butanol. In the modeling equations the density and the interfacial tension are taken to be function of both temperature and concentration. To identify the onset point the non-linear equations are linearized around a known base state. In this case the base state is the conductive no-flow state. The resulting set of linear equations is solved using a spectral Chebyshev collocation method. Four major results arise from this work. First, in a multi-component system in the absence of gravity, an instability arises only when the system is heated from the vapor side as opposed to evaporation in a single-component. The implication is that evaporative processes in thin layers or in micro-gravity are best conducted with heat from the liquid side if instabilities are to be avoided.Second, in the presence of gravity, a multi-component system may become unstable no matter the direction of heating. If thermal buoyancy is negligible then it is shown in this study that heating from the vapor side is the unstable arrangement. Otherwise either heating style can produce an instability. This result means that the applied temperature difference must be kept below a threshold in order to avoid flow instabilities no matter the heating direction.Third, whenever instability occurs in the absence of gravity, patterns will not result in the case of a pure component but may result in the case of multi-components. Likewise, patterns will result when gravity is taken into account provided the aspect ratio of the container lies in a suitable range. As a result, aspect ratios can be chosen to avoid multi-cellular patterns even if convective flow instabilities arise during evaporation.Lastly, oscillations are not ordinarily predicted despite opposing effects of solutaland thermal convection in the evaporation problem.

Les gommes d’Acacia (AG, E414EC) sont largement utilisées par ses propriétés stabilisantes, émulsifiantes et filmogènes. Le but de ce projet de thèse consiste à caractériser les propriétés interfaciales et émulsifiantes des gommes d’Acacia. Les études des propriétés interfaciales liquide-liquide ont confirmé que l’A. senegal permettait une plus grande diminution de la tension interfaciale et une formation plus rapide de films à l’interface. Ceci est en accord avec sa teneur plus élevée en AGP de masse molaire élevée riche en protéine, la meilleure accessibilité de la partie protéique et la plus grande flexibilité moléculaire par rapport à A. seyal. De même, ces avantages biochimiques et structuraux de l’A. senegal se sont avérés être impliqué dans les propriétés émulsifiantes des gommes. Les résultats d'une approche innovante visant à contrôler la teneur en AGP de masse molaire élevée riche en protéines dans le milieu et la concentration totale de gomme par le mélange de deux fractions bien caractérisées isolées chez A. senegal ont confirmé la synergie fonctionnelle entre la quantité des AGP de masse molaire élevée riche en protéines et la concentration totale en gomme. De plus, en présence de quantités élevées d'AGP de masse molaire élevée riches en protéines, les émulsions étaient stables contre la floculation/coalescence en raison de la forte teneur en protéines permettant une répulsion électrostatique entre les gouttelettes et la viscosité apparente élevée du milieu. Celles-ci étaient en accord lorsque les propriétés émulsifiantes de A. senegal et A. seyal ont été comparées. En effet, A. senegal contient une plus grande quantité d'AGP de masse molaire élevée riches en protéines et d'acides uroniques, et sa dispersion présente une viscosité apparente supérieure à celle d'A. seyal. En outre, lorsque les gommes d'Acacia étaient utilisées sous forme de films séchés, la grande teneur en AGP riches en protéines de masse molaire élevée et la bonne accessibilité des fragments protéiques d'A. senegal permettaient aux films d’avoir une surface homogène lisse avec des propriétés hydrophobes caractéristiques. En revanche, les films de A. seyal étaient irréguliers et constitués d'une organisation répétitive comme de nombreuses grosses particules uniformément réparties sur la surface par rapport au faible degré de ramification, une teneur élevée en arabinose favorisant les liaisons hydrogènes intra et inter moléculaires et une forte capacité d'hydratation chaînes polysaccharidiques de A. seyal. Selon les résultats, cette thèse apporte de nouvelles connaissances sur la relation entre la composition biochimique, les propriétés structurales et physico-chimiques, pour la première fois, dans les deux aspects de la gomme, à savoir sous forme de dispersion liquide et de films séchés.Mots clés : gomme d’Acacia, propriétés interfaciales et émulsifiantes, arabinogalactane-protéines, arômes / Acacia gums (AG, E414 EC) are widely used for its stabilizing, emulsifying and film-forming properties. The aim of this project is to characterize the interfacial and emulsifying properties of Acacia gums. The main results from liquid-liquid interfacial properties study confirmed that A. senegal showed a faster decrease of interfacial tension and a more rapid interfacial film formation. These were in agreement to its greater content of high molar mass-protein AGPs content, the more accessibility of proteinaceous moieties, and the higher molecular flexibility compared to A. seyal. In the same vein, these biochemical and structural advantages of A. senegal were found to be involved in the emulsifying properties of gums. The results from an innovative approach aiming to control high molar mass protein-rich AGPs content in bulk and the total concentration of gum by mixing two well characterised fractions isolated from A. senegal confirmed the functional synergism between the amount of high molar mass protein-rich AGPs and the total gum concentration. Moreover, in the presence of high molar mass protein-rich AGPs in high amount, the emulsion became stable to flocculation/coalescence due to the great protein content allowing electrostatic repulsion between droplets and the high bulk apparent viscosity. These were in agreement when the emulsifying properties of A. senegal and A. seyal were compared. Indeed, A. senegal containing a greater amount of high molar mass protein rich AGPs and uronic acids and its dispersion having a higher apparent viscosity than A. seyal allowing the former to form emulsion with a more stability. Besides, when Acacia gums were used in the form of dried film, the great content of high molar mass protein-rich AGPs and the good accessibility of proteinaceous moieties of A. senegal allowed the smooth homogeneous surface with a hydrophobic characteristic properties of A. senegal dried films. In contrast, A. seyal films was irregular and composed of a repetitive organization as numerous large particle uniformly distributed on surface in the relation to the low degree of branching, high arabinose content favoring intra and inter molecular hydrogen bonding and high hydration ability causing aggregation of polysaccharide chains of A. seyal. According to the results, this thesis brings new knowledge of the relationship between biochemical composition, structural and physicochemical properties, for the first time, across both aspects of gum, i.e. in the form of liquid dispersion and dried films.Keywords: Acacia gums, interfacial and emulsifying properties, arabinogalactan proteins, aroma compounds

La spécificité des émulsions de Pickering repose sur la présence de particules stabilisantes, substituant l'utilisation de tensio-actifs. Les particules s'adsorbent de manière irréversible aux interfaces des gouttes d'émulsions, leur conférant une stabilité à long terme.
L'objectif de cette thèse a été de comprendre, développer et optimiser des procédés permettant la fabrication de différents types d'émulsions de Pickering grâce à des nanoparticules de silice. Trois projets ont vu le jour dans ce travail : (i) Tout d'abord une approche théorique concernant l'étude physico-chimique des interfaces d'émulsions de Pickering stabilisées par des nanoparticules de silice individuelles non- agrégées. L'adsorption de ces nanoparticules sous forme de mono- ou multi- couches aux interfaces des gouttes d'émulsion a pu être mise en évidence en fonction du ratio Huile/Silice intégré au milieu. A haut ratio, le diamètre des gouttes d'émulsion dépend des paramètres de formulation. Des monocouches de nanoparticules peuvent s'adsorber aux interfaces avec un taux de couverture maximal de 54% à la surface des gouttes d'huile. Tandis qu'à bas ratio, le diamètre des gouttes dépend du procédé de fabrication de l'émulsion. Des multicouches de nanoparticules s'adsorbent aux interfaces. (ii) La taille des gouttes d'émulsion a ensuite été réduite par divers procédés afin d'obtenir des nanoémulsions de Pickering, également appelées NanoPickering. La première étape consistait à tester la viabilité de telles émulsions en les fabriquant par un procédé fort en énergie, i.e. la sonication. Dans un second temps un procédé faible en énergie a été utilisé : la nanoprécipitation. Il a ainsi été possible d'obtenir des nanoémulsions de Pickering stables sur plus d'un mois. Cependant, la quantité d'huile maximale incorporable au système final reste faible (environ inférieure à 1wt%). (iii) Une nouvelle application a été développée en parallèle permettant de formuler des émulsions foisonnées de Pickering, intégralement stabilisées par des nanoparticules. Il est possible d'obtenir deux types d'émulsions foisonnées de Pickering : les premières ont une très forte teneur en air ; les secondes sont stables en termes de hauteur grâce à un phénomène de gélification qui a lieu après un changement d'état macroscopique.
L'ensemble de ces résultats confirme que les émulsions de Pickering offrent encore à ce jour la possibilité de découvrir de toutes nouvelles applications fabriquées par des procédés innovants. Par exemple, les nanoémulsions sans émulsifiant émulsifiées de manière spontanée, ou encore les émulsions foisonnées intégralement stabilisées sans émulsifiant. De plus, les approches théoriques restent également nombreuses, et les études des phénomènes interfaciaux sont encore des questions scientifiques très actuelles / Pickering emulsions are emulsions stabilized by solid particles in opposition to emulsifiers-stabilized emulsions. The stabilization of Pickering emulsions comes from a strong adsorption of solid particles at the oil-water interface that builds a rigid barrier against coalescence. The aim of this work was to understand, develop and optimize methods for the fabrication of different types of Pickering emulsions stabilized by silica nanoparticles. Three mains axes can be exposed: (i) Firstly, a theoretical approach on the physico-chemical interfacial phenomena of Pickering emulsions stabilized by non-aggregated individual silica nanoparticles. Adsorption as mono- or multi-layers can be reached depending the Oil/Silica ratio. Two behaviors were observed: At high oil/silica mass ratio, the oil/water interface was covered by a monolayer of nonaggregated silica particles. Stable emulsions were stabilized by a monolayer of silica particles at 54% coverage of the oil droplets surface. Oil droplet diameter depends on formulation parameters. Adsorption as multilayers was reached at lower oil/silica mass ratio and oil droplet diameter depends on fabrication process. (ii) Droplets diameters could be reduced thanks to various processes in order to obtain Pickering nanoemulsions, also called NanoPickering. The first step was to test the viability of such emulsions using a high energy process (sonication). Then, a low energy process (nanoprecipitation) was used. Stable Pickering nanoemulsions can be made on more than one month. However, the oil quantity obtained in the final media is low (less than 1wt%). (iii) In parallel, a new application was developed allowing the formulation of Pickering aerated emulsions, totally stabilized by nanoparticles. Two types of Pickering whipped emulsions can be made. One which has high air content or one which has a stable height, thanks to a gelification phenomenon. This occurs after a macroscopic change of state. All of these results confirm that Pickering emulsions offer the opportunity to discover new applications made by innovative processes. For instance, NanoPickering made by spontaneous emulsification, or Pickering whipped emulsion fully stabilized without emulsifiers. Moreover, theoretical approaches and interfacial phenomena studies are still current scientific questions

A reliable and robust diffusion barrier, commonly known as under bump metallisation (UBM), is indispensable in solder interconnects in order to retard the interfacial reaction rate, hence the growth of intermetallic compounds (IMCs). However, electroless Ni-P coatings are not adequate to inhibit interfacial reactions effectively since the formation of columnar structure and voids in the crystalline Ni3P layer in hybrid automotive devices (operating temperature above 300ºC) can significantly deteriorate the mechanical integrity of solder joints. In this thesis, electroless Ni-W-P coatings, as an effective UBM capable to serving under high temperature (up to 450ºC), are developed, characterised and subsequently applied onto the high temperature lead-free solder interconnects.

Emulsion explosives have become the preferred choice as blasting agents for numerous industries including mining, agriculture, and construction. One of the most important components in such an emulsion is an emulsifier, which controls the emulsification properties of the explosive. The present study involves the production of one such emulsifier, which is produced by reacting two immiscible liquids, PIBSA (polyisobutylene succinic anhydride) and MEA (monoethanolamine). The study examines the effect of design variable such as the impeller speed, impeller type and the dispersed phase volume fraction on interfacial area. Experiments were carried out in a 0.15 m diameter fully baffled stirred tank using a 6-bladed Rushton turbine impeller and a marine propeller. Drop size was determined using a microscope with a video camera and image processing system. The transient concentration of PIBSA was determined using FTIR analysis and used to estimate the volume fraction of the dispersed phase (ƒÖ). The effective interfacial area was calculated using the Sauter mean drop diameter, d32 and ƒÖ. Impeller speeds ranging from 150 to 600 rpm and dispersed phase volume fractions, ƒÖ ranging from 0.01 to 0.028 were examined in the experimental study. It was found that that the evolution of Sauter mean drop diameter, d32 has four different trends depending on ƒÖ and impeller speed. At high impeller speeds and high ƒÖ, d32 values decrease initially and reach constant values after a long period of time. This trend is consistent with the findings in previous investigations. Under certain operating conditions, d32 values increase initially with stirring time to reach a maximum value and then decrease to reach a steady state value. The presence of these trends has been attributed to the effect of changing physical properties of the system as a result of chemical reaction. Results indicate that, in general, Sauter mean drop diameter d32 decreases with an increase in agitation intensity. However a decrease in the dispersed phase volume fraction is found to increase d32. These trends are found to be the same for both impeller types studied. Comparing the drop size results produced by the two impellers, it appears that low-power number propeller produces s ignificantly smaller drops than the Rushton turbine. It was found that the concentrations of reactants decrease with time for all impeller speeds thereby leading to a decrease in interfacial area with the progress of the reaction. Interfacial area values obtained at higher impeller speeds are found to be lower in spite of lower d32 values at these speeds. Also, these values decrease with time and become zero in a shorter duration indicating the rapid depletion of MEA. The interfacial area values obtained with the propeller at a given impeller speed are lower as compared to those for Rushton turbine. They also decrease and become zero in a shorter duration as compared to those for Rushton turbine suggesting propeller¡¦s performance is better in enhancing the reaction rate.

This thesis describes structural and binding studies in enzymes from two different  organisms: ribonucleotide reductase from Mycobacterium tuberculosis (RNR) and lipase A from Candida antarctica (CalA). RNR is viable as a target for new drugs against the causative agent of tuberculosis. The biologically active form of RNR is a heterotetramer with an α2β2 substructure. Here we show that an N-acetylated heptapeptide based on the C-terminal sequence of the smaller RNR subunit can disrupt the formation of the holoenzyme sufficiently to inhibit its function. An N-terminal truncation, an alanine scan and a novel statistical molecular design approach based on the heptapeptide Ac-Glu-Asp-Asp-Asp-Trp-Asp-Phe-OH were applied. A full-length acetylated heptapeptide was necessary for inhibition, and Trp5 and Phe7 were also essential. Exchanging the acetyl for the N-terminal Fmoc protective-group increased the binding potency ten-fold. Based on this, several truncated and N-protected peptides were evaluated in a competitive fluorescence polarization assay. The single-amino acid Fmoc-Trp inhibits the RNR holoenzyme formation with a dissociation constant of 12µM, making it an attractive candidate for further development of non-peptidic inhibitors Lipases are enzymes with major biotechnological applications. We report the x-ray structure of CalA, the first member of a novel family of lipases. The fold includes a well-defined lid as well as a classical α/β hydrolase domain. The structure is that of the closed/inactive state of the enzyme, but loop movements near Phe431 will provide virtually unlimited access to solvent for the alcohol moiety of an ester substrate. The structure thus provides a basis for understanding the enzyme's preference for acyl moieties with long, straight tails, and for its highly promiscuous acceptance of widely different alcohol and amine moieties. An unconventional oxyanion hole is observed in the present structure, although the situation may change during interfacial activation.

This thesis concerns computer simulation of diffusional processes in alloys. The main focus is on the development of simulation techniques for diffusion in single-phase domains, but also diffusion controlled phase-transformations and interfacial processes are discussed. Different one-dimensional simulation techniques for studying the Kirkendall effect are developed and analyzed. Comparisons with experimentally observed marker migration show good agreement for small shifts and comparisons with observed Kirkendall porosity show reasonable agreement under the assumption that a certain supersaturation is needed before the vacancies coalesce into pores. A convenient approach in simulations of kinetics is to use thermodynamic software, e.g. Thermo-Calc, to calculate thermodynamic quantities, e.g. chemical potentials, required in the simulation. The main drawback with such an approach is that it will generate a large amount of additional computational work. To overcome this problem a method that decreases the amount of computational work has been developed. The new method is based on artificial neural networks (ANN). By training the ANN to estimate thermodynamic quantities a significant increase in computational speed was obtained. By calculating the dissipation of available driving force due to diffusion inside migrating interfaces an approach for including the effect of solute drag in computer simulations of grain growth and phase transformations has been developed. The new method is based on an effective interfacial mobility and simulations of grain growth have been performed in binary and ternary systems using experimentally assessed model parameters. / QC 20100930

The objective of this thesis was to relate and link the physiological responses of the cells to the electrical responses or output obtained from the TSM acoustic wave sensor. In particular, the device was applied to the study of immortalized murine hypothalamic neurons (mHypoE-38 and -46 cell models) under a variety of conditions and stimuli. Cellular studies which lead to the production of detectable neuronal responses include neuronal deposition, adhesion and proliferation, alteration in the extent of specific cell-surface interactions, actin filament and microtubule cytoskeletal disruptions, effects of cell depolarization, solution tonicity, inhibition of the Na+-K+ pump via ouabain, effects of neuronal synchronization and the effects ligand-receptor interaction (glucagon). In addition, the introduction of drugs, neurotrophic factors (forskolin and beterferon), toxicity agents (NaOH, EtOH) and TiO2 nanoparticles were similarly investigated. A preliminary study conducted with mouse embryonic stem cells showed that not all cell lines are suitable for investigation with the TSM sensor at the current stage of sensor development. It has been found that control studies conducted with water as the solvent and the bare sensor substrate is insufficient to model the behavior of the sensor in the absence of cells. When biological buffers are used in addition to protein coatings the sensor responses are altered in magnitude and direction. To analyze the full range of cellular changes observed on the TSM sensor, the full impedance spectrum is required. As such in this thesis, the series and parallel resonant frequencies, the motional resistance, the maximum phase of the impedance and the static capacitance (fs, fp, Rm, θmax and Co were used to characterize the cellular responses observed. In the presence of cells fs shifts are largely influenced by the damping of the TSM resonator. The formation of cell-surface interactions and hence the increase in coupling and acoustic energy dissipation can be modeled as an additional resistor in the BVD model. Further sensor and cellular changes can be obtained by negating the effects of damping from fs with the use of Rm and θmax.

Computer-aided drug discovery involves the application of computer science and programming to solve chemical and biological problems. Specifically, the QSAR (Quantitative Structure Activity Relationships) methodology is used in drug development to provide a rational basis of drug synthesis, rather than a trial and error approach. Molecular dynamics (MD) studies focus on investigating the details of drug-target interactions to elucidate various biophysical characteristics of interest. Infectious diseases like Trypanosoma brucei rhodesiense (TBR) and P. falciparum (malaria) are responsible for millions of deaths annually around the globe. This necessitates an immediate need to design and develop new drugs that efficiently battle these diseases. As a part of the initiatives to improve drug efficacy QSAR studies accomplished the formulation of chemical hypothesis to assist development of drugs against TBR. Results show that CoMSIA 3D QSAR models, with a Pearson’s correlation coefficient of 0.95, predict a compound with meta nitrogens on the phenyl groups, in the combinatorial space based on a biphenyl-furan diamidine design template, to have higher activity against TBR relative to the existing compound set within the same space. Molecular dynamics study, conducted on a linear benzimidazole-biphenyl diamidine that has non-classical structural similarity to earlier known paradigms of minor groove binders, gave insights into the unique water mediated interactions between the DNA minor groove and this ligand. Earlier experiments suggested the interfacial water molecules near the terminal ends of the ligand to be responsible for the exceptianlly high binding constant of the ligand. Results from MD studies show two other modes of binding. The first conformation has a single water molecule with a residency time of 6ns (average) that is closer to the central part of the ligand, which stabilizes the structure in addition to the terminal water. The second conformation that was detected had the ligand completely away from the floor of the minor groove, and hydrogen bonded to the sugar oxygens.