Metal nanoparticles have recently gained popularity in many research areas due to their nanosize-related properties. Depending on the size of the metal nanoparticle, their mode of interaction with electromagnetic radiation and the outcome of this interaction vary; in turn the effect exerted on a protein which is conjugated to a nanoparticle varies, because different sized nanoparticles demonstrate different modes of energy transfer with electromagnetic radiation and molecules conjugated to them. Very small cluster with sizes around 1 – 1.2 nm tend to get excited by incident light and emit fluorescence, whereas larger nanoparticles absorb the incoming light very strongly due to their LSPR. In this study we observed the outcomes of the interaction between two types of nanoparticles, namely gold and gold/silver alloyed nanoparticles with the fluorescence emission of two fluorophores, namely eGFP and rPhiYFP; and demonstrated a bioassay where the fluorescence modulation by gold nanoparticles can be used as the sensing strategy. Lastly, we demonstrated the potential of autofluorescent gold nanoparticles as intracellular reporters.

<p>Noble metal nanostructures display collective oscillation of the surface conduction electrons upon light irradiation as a form of localized surface plasmon resonance (LSPR) properties. Size, shape and the refractive index of surrounding environment are the key features that controls the LSPR properties. Surface passivating ligands have the ability to modify the charge density of nanostructures to allow resonant wavelength to match that of the incident light, a phenomenon called “plasmoelectric effect,”. According to the drude model Red and blue shifts of LSPR peak of nanostructures are observed in the event of reducing and increasing charge density, respectively. However, herein we report unusual LSPR properties of gold triangular nanoprisms (Au TNPs) upon functionalization with para-substituted thiophenols (X-Ph-SH, X = -NH₂, -OCH₃, -CH₃, -H, -Cl, -CF₃, and -NO₂). Accordingly, we hypothesized that an appropriate energy level alignment between the Au Fermi energy and the HOMO or LUMO of ligands allows delocalization of surface plasmon excitation at the hybrid inorganic-organic interface, and thus provides a thermodynamically driven plasmoelectric effect. We further validated our hypothesis by calculating the HOMO and LUMO levels and also work function changes of Au TNPs upon functionalization with para substituted thiol. We further utilized our unique finding to design ultrasensitive plasmonic substrate for biosensing of cancer microRNA in bladder cancer and owe to unpresidential sensitivity of the developed Au TNPs based LSPR sensor, for the first time we have been utilized to analysis the tumor suppressor microRNA for more accurate diagnosis of BC. Additionally, we have been advancing our sensing platform to mitigate the false positive and negative responses of the sensing platform using surface enhanced fluorescence technique. This noninvasive, highly sensitive, highly specific, also does not have false positives technique provide strong key to detect cancer at very early stage, hence increase the cancer survival rate. Moreover, the electromagnetic field enhancement of Surface-Enhanced Raman Scattering (SERS) and other related surface-enhanced spectroscopic processes resulted from the LSPR property. This dissertation describes the design and development of entirely new SERS nanosensors using flexible SERS substrate based on unique LSPR property of Au TNPs and developed sensors shows excellent SERS activity (enhancement factor = ~6.0 x 106) and limit of detection (as low as 56 parts-per-quadrillions) with high selectivity by chemometric analyses among three commonly used explosives (TNT, RDX, and PETN). Further we achieved the programable self-assembly of Au TNPs using molecular tailoring to form a 3D supper lattice array based on the substrate effect. Here we achieved the highest reported sensitivity for potent drug analysis, including opioids and synthetic cannabinoids from human plasma obtained from the emergency room. This exquisite sensitivity is mainly due to the two reasons, including molecular resonance of the adsorbate molecules and the plasmonic coupling among the nanoparticles. Altogether we are highly optimistic that our research will not only increase the patient survival rate through early detection of cancer but also help to battle the “war against drugs” that together is expected to enhance the quality of human life. </p> <p> </p>

Metal nanoparticles have recently gained popularity in many research areas due to their nanosize-related properties. Depending on the size of the metal nanoparticle, their mode of interaction with electromagnetic radiation and the outcome of this interaction vary; in turn the effect exerted on a protein which is conjugated to a nanoparticle varies, because different sized nanoparticles demonstrate different modes of energy transfer with electromagnetic radiation and molecules conjugated to them. Very small cluster with sizes around 1 – 1.2 nm tend to get excited by incident light and emit fluorescence, whereas larger nanoparticles absorb the incoming light very strongly due to their LSPR. In this study we observed the outcomes of the interaction between two types of nanoparticles, namely gold and gold/silver alloyed nanoparticles with the fluorescence emission of two fluorophores, namely eGFP and rPhiYFP; and demonstrated a bioassay where the fluorescence modulation by gold nanoparticles can be used as the sensing strategy. Lastly, we demonstrated the potential of autofluorescent gold nanoparticles as intracellular reporters.

Les matériaux composites peuvent présenter des propriétés qu'aucun des composants individuels ne présente. En outre, à l'échelle du nanomètre les nanocomposites peuvent présenter de nouvelles propriétés par rapport à l'état massif ou à des macrocomposites des mêmes composants en raison d’effets de confinement et d’effets quantiques liés à la taille. Les nanocomposites semi-conducteur/métal sont très intéressants en raison de leurs uniques propriétés catalytiques et opto-électroniques et la possibilité de les ajuster facilement. Ce travail de thèse étudie les interactions spécifiques et les propriétés physiques qui se manifestent dans les films minces de ZnO et nanocomposites ZnO-Au synthétisés par pulvérisation magnétron réactive continue. Premièrement, il est observé qu’il est possible d'ajuster les propriétés microstructurales et optiques des couches de ZnO en réglant les paramètres expérimentaux. La croissance épitaxiale de ZnO sur saphir a été réalisée pour la première fois dans des conditions riches en oxygène sans assistance thermique. En outre, une étude des propriétés optiques met en évidence la relation étroite entre les propriétés optiques et de la chimie des défauts dans les couches minces de ZnO. Un modèle a été proposé pour expliquer la grande dispersion des valeurs de gap rencontrées dans la littérature. Deuxièmement, il a été possible de révéler l'influence profonde de l'incorporation de l'or dans la matrice de ZnO sur des propriétés importantes dans des films nanocomposites. En outre, la présence de défauts donneurs (accepteurs) au sein de la matrice ZnO se permet de réduire (oxyder) les nanoparticules d’or. Ce travail de recherche contribue à une meilleure compréhension des nanocomposites semi-conducteurs/métal et révèle le rôle important de l'état de la matrice semi-conductrice et de la surface des particules pour les propriétés finales du matériau / Composite materials can exhibit properties that none of the individual components show. Moreover, composites at the nanoscale can present new properties compared to the bulk state or to macro-composites due to confinement and quantum size effects. The semiconductor/metal nanocomposites are highly interesting due to their unique catalytic and optoelectronic properties and the possibility to tune them easily. This PhD work gives insight into the specific interactions and resulting physical properties occurring in ZnO and ZnO-Au nanocomposite films grown by reactive DC magnetron sputtering. The results can be summarized in two points: First, it was possible to tune the microstructural and optical properties of ZnO. Epitaxial growth of ZnO onto sapphire was achieved for the first time in O2-rich conditions without thermal assistance. Also, a study of the optical properties highlights the close relationship between the bandgap energy (E_g ) and the defect chemistry in ZnO films. A model was proposed to explain the large scatter of the E_g values reported in the literature. Second, the deep influence of the incorporation of gold into the ZnO matrix on important material properties was revealed. Moreover, the presence of donor (acceptor) defects in the matrix is found to give rise to the reduction (oxidation) of the Au nanoparticles. This research work contributes to a better understanding of semiconductor/metal nanocomposites revealing the key role of the state of the semiconductor matrix

Indiana University-Purdue University Indianapolis (IUPUI) / The field of two-dimensional (2D) nanomaterials first began in earnest with the discovery of graphene in 2004 due to their unique shape-dependent optical, electronic, and mechanical properties. These properties arise due to their one-dimensional confinement and are further influenced by the elemental composition of the inorganic crystal lattice. There has been an intense focus on developing new compositions of 2D nanomaterials to take advantage of their intrinsic beneficial properties in a variety of applications including catalysis, energy storage and harvesting, sensing, and polymer nanocomposites. However, compared to the field of bulk materials, the influence of surface chemistry on 2D nanomaterials is still underdeveloped. 2D nanomaterials are considered an “all-surface” atomic structure with heights of a single to few layers of atoms. The synthetic methods used to produce 2D materials include bottom-up colloidal methods and top-down exfoliation related techniques. Both cases result in poorly controlled surface chemistry with many undercoordinated surface atoms and/or undesirable molecules bound to the surface. Considering the importance surfaces play in most applications (i.e., catalysis and polymer processing) it is imperative to better understand how to manipulate the surface of 2D nanomaterials to unlock their full technological potential. Through a focus of the ligand-surface atom bonding in addition to the overall ligand structure we highlight the ability to direct morphological outcomes in lead free halide perovskites, maximize optoelectronic responses in substoichiometric tungsten oxide, and alter physicochemical properties titanium carbide MXenes. The careful control of precursor materials including poly(ethylene glycol) (PEG) surface ligands during the synthesis of bismuth halide perovskites resulted in the formation of 2D quasi-Ruddlesden-Popper phase nanomaterials. Through small angle X-ray scattering (SAXS) and in conjunction with X-ray photoelectron spectroscopy (XPS) we were able to conclude that an in-situ formation of an amino functional group on our PEG-amine ligand was inserted into the perovskite crystal lattice enabling 2D morphology formation. Additionally, through UV-vis absorption and ultraviolet photoelectron spectroscopies we were able to develop a complete electronic band structure of materials containing varying halides (i.e., Cl, Br, and I). Furthermore, through the increased solubility profile of the PEG ligands we observed solvent controlled assemblies of varying mesostructures. We developed an ex-situ ligand treatment to manipulate the localized surface plasmon resonance (LSPR) response of anion vacancy doped tungsten oxide (WO3-x) nanoplatelets (NPLs). Upon ligand treatment to alter the surface passivating ligand from carboxylic acid containing myristic acid (MA) to tetradecylphosphonic acid (TDPA) we observed a >100 nm blue shift in the LSPR response. Using Fourier transform infrared (FTIR) and Raman spectroscopies in conjunction with DFT calculated Raman spectra we were able to conclude this shift was due to the formation of tridentate phosphonate bonds on the NPLs surface. Phosphonate bonding allows for an increase in surface passivation per ligand decreasing surface trapped electrons. These previously trapped electrons were then able to participate as free electrons in the LSPR response. Electron paramagnetic spectroscopy (EPR) further supported this decrease in surface traps through a decrease and shift of the EPR signal related to metal oxide surface trapped electrons. Lastly, using our knowledge of PEG ligands we were able to modify esterification chemistry to covalently attach PEG ligands to a MXene surface. The successful formation of an ester bond between a carboxylic acid containing PEG ligand and hydroxyl terminating group on the MXene surface was supported by FTIR spectroscopy and thermogravimetric analysis. The attachment of PEG resulted in a drastic change in the hydrophilicity of the MXene surface. Where MXenes were previously only processed in extremely polar solvents the PEG attachment allowed for high dispersibility in a wide range of polar and non-polar organic solvents, effectively increasing their processability. Further, this chemistry was modified to include an additional functional group on the PEG ligand to increase the valency of the post-modification MXene nanoflakes. Overall, work presented in this dissertation represents the development and application of surface chemistry to relatively new 2D nanomaterials. We believe our work significantly increases the knowledge of 2D halide perovskite formation, manipulation of LSPR active metal oxide materials, and the future processing of MXene materials.

Die vorliegende Dissertation beschäftigt sich mit der Herstellung und Charakterisierung einzelner Edelmetallnanopartikel-Cluster für die oberflächenverstärkte Raman-Streuung (engl. surface-enhanced Raman scattering; SERS). In Clustern treten stark lokalisierte Regionen mit sehr hohen Feldverstärkungen auf (engl. hot spots), die den SERS-Effekt extrem verstärken. In der Regel werden Metallnanopartikel in kolloidaler Suspension untersucht, so dass nur Aussagen über das gesamte Kolloid und nicht über einzelne Cluster getroffen werden können. Für die Identifizierung von Struktur-Eigenschafts-Korrelationen wurden in dieser Arbeit daher einzelne Cluster optisch und elektronenmikroskopisch charakterisiert. Der erste Teil der vorliegenden Arbeit beschreibt neue Ansätze zur Trennung von glasverkapselten SERS-Nanopartikel-Clustern mit Hilfe der Dichtegradientenzentrifugation sowie die Etablierung einer modifizierten Synthesevorschrift zur Herstellung von monodispersen Silbernanopartikeln. Der zweite Teil beschäftigt sich mit der optischen Charakterisierung einzelner SERS-Cluster und den dafür notwendigen experimentellen Umbauten eines bestehenden Versuchsaufbaus. Anschließend wird die oberflächenverstärkte Raman-Streuung von SERS-Clustern in Abhängigkeit der Polarisation gemessen und die lokalisierte Oberflächenplasmonenresonanz (engl. localized surface plasmon resonance; LSPR) von Nano- und Mikrostrukturen bestimmt.

[pt] Nanopartículas metálicas apresentam um pico no espectro de absorção devido ao efeito de LSPR (Localized Surface Plasmon Resonance – Ressonância de Plasmon de Superfície Localizado). A posição espectral do pico depende da forma, do tamanho, do material das nanopartículas e do índice de refração do meio em que se encontra. Conhecendo como a posição espectral deste pico varia de acordo com o índice de refração externo, pode-se utilizar, em princípio, estas nanopartículas como elemento sensor para medir a refração de líquidos e gases. Um sensor de índice de refração foi desenvolvido fabricando-se nanopartículas metálicas na extremidade de uma fibra óptica. Estas nanopartículas foram fabricadas a partir de um filme de ouro evaporado na extremidade de uma fibra óptica que depois foi aquecida. As nanopartículas assim formadas possuem uma distribuição não homogênea de forma e tamanho. De forma a se obter um maior controle do tamanho e da forma das nanopartículas metálicas fabricadas para o desenvolvimento de um sensor óptico com maior controle dos parâmetros, foi investigada nesta dissertação a formação de nanopartículas de prata por síntese química. Diferentes processos para a síntese foram investigados. As nanopartículas de prata localizadas na extremidade da fibra óptica foram caracterizadas quanto à resposta do sinal de LSPR quando as nanopartículas estavam em contato com meios com diferentes índices de refração. Visando ainda a investigação de sistemas de fibras ópticas com aplicação em sensoriamento, foi realizada uma simulação da deformação de cavidades elípticas formadas no interior de fibras ópticas quando estas estão sujeitas à aplicação de uma tensão longitudinal da fibra. Este tipo de cavidade pode ser usada como sensor de deformação devido à interferência das múltiplas reflexões no interior da cavidade. / [en] Metallic nanoparticles show a peak in the absorption spectrum due to the Localized Surface Plasmon Resonance (LSPR) effect. The position of this peak depends on the shape, size and the type of the nanoparticles as well as on the refractive index of the surrounding media. From the dependence of the position of the peak with the external refractive index, it is possible to use these nanoparticles as a sensor element to measure the refractive index of liquids and gas. A refractive index sensor was developed with nanoparticles deposited at the end face of an optical fiber. These nanoparticles, fabricated from a heated gold film deposited at the end face of the fiber, have a non homogenous distribution of size and form. In order to obtain a better control of the size and form of the fabricated metallic nanoparticles, aiming the development of an optical sensor with control of the involved parameters, it was investigated in this work the formation of silver nanoparticles by chemical synthesis. Furthermore, extending the investigation of fiber optics systems with applications on sensing, it was performed a simulation of the deformation of elliptical air cavities, formed in the interior of optical fibers, under the effect of longitudinal stress along the fiber. This type of system can be used as a deformation sensor due to the multiple interference reflections in the interior of the cavity.

Two rich and vibrant fields of investigation - graphene and plasmonics - strongly overlap in this work, giving rise to a novel hybrid photodetection device. The intrinsic photoresponse of graphene is significantly enhanced by placing the gold nanorods exhibiting unique anisotropic localized surface plasmon resonances on the graphene surface. The reported enhanced photoresponse of graphene is caused by the redistribution of localized surface plasmons in the nanoparticles into graphene. The exact underlying energy redistribution mechanism is thoroughly studied by a single particle scattering spectroscopy monitoring the particle plasmon linewidth as a function of the number of underlaying graphene layers. The obtained extraordinary plasmon broadening for nanoparticles placed on graphene suggests the contribution of a novel energy redistribution channel attributed to the injection of hot electrons from gold nanorods into graphene.

<p>  </p> <p>Designing and developing a diagnostic technology that is capable of highly sensitive and specific, multiplexed, high-throughput, and quantitative biomarker assays for disease diagnosis and progression is of the upmost importance in modern medicine and patient care. Current diagnostic assays capable of multiplexed and high-throughput analysis include mass spectrometry, electrochemistry, polymerase chain reaction (PCR), and fluorescence-based techniques, however, these techniques suffer from a lack in sensitivity, false responses, or extensive sample processing that are detrimental to clinical diagnostics. To overcome these sensitivity challenges, the field of nanoplasmonics has become utilized when developing diagnostic assays. Plasmonic-based diagnostic tests utilize the unique optical, chemical, and physical property of nanoparticles to increase the sensitivity of the assay. In this dissertation, novel diagnostic platforms that utilize nanoparticles and their localized surface plasmon resonance (LSPR) property will be introduced. LSPR is an optical property in noble metallic nanoparticles that is referred to as the collective oscillation of free electrons upon light irradiation. It is highly dependent on the shape, size, and dielectric constant (refractive index) of the surrounding medium of the nanoparticle and LSPR sensing is based on a change in these properties. In this dissertation, the LSPR property is utilized to fabricate nanoplasmonic-based diagnostic platforms that are capable of multiplexed and high-throughput biomarker assays, with high sensitivity and specificity. The work presented in this dissertation is presented as six chapters, (1) Introduction. (2) Methods, (3) Fabrication of a LSPR-based multiplexed and high-throughput biosensor platform and its application in performing microRNA assays for the diagnosis of bladder cancer. In this chapter, the advancement of single-plex solid state LSPR-based biosensors into a multiplexed and high-throughput diagnostic biosensor platform is reported for the first time. The diagnostic biosensor platform is first fabricated utilizing different gold nanoparticles (spherical nanoparticles, nanorods, and triangular nanoprisms), and then with the gold triangular nanoprisms as the nanoparticle of choice, microRNA assays were performed. The developed biosensor platform is capable of assaying five different types of microRNAs simultaneously at an attomolar limit of detection. Additionally, five microRNA were assayed in 20-bladder cancer patient plasma samples. (4) Development/optimization of the biosensor platform presented in Chapter 3 for the detection of COVID-19 biomarkers. In this chapter, the biosensor platform utilized in Chapter 3 was designed to assay 10 different COVID-19 specific biomarkers from three classes (six viral nucleic acid gene sequences, two spike protein subunits, and two antibodies) with limit of detections in the attomolar range and with high specificity. The high-throughput capability of the biosensor platform was advanced, with the platform performing analysis of a single biomarker in 92 patient samples simultaneously. Additionally, the biomarker platform was utilized to assay all 10 biomarkers in a total of 80 COVID-19 patient samples.  (5) Further optimization of the biosensor platform for the development of a highly specific antibody detection test for COVID-19. During the COVID-19 pandemic, knowledge was gained on the specificity of antibodies produced against COVID-19. In this chapter, that knowledge was applied towards the optimization of the biosensor platform presented in Chapter 4 in order to assay SARS-CoV-2 neutralizing antibody IgG. The optimization of the biosensor platform included the size of the gold triangular nanoprisms and the receptor molecule of choice. The biosensor platform assayed this highly specific COVID-19 IgG antibody with a limit of detection as low as 30.0 attomolar with high specificity and no cross reactivity. Additionally, as a proof of concept, the biosensor platform was utilized in a high-throughput format to assay SARS-CoV-2 IgG in a large cohort of 121 COVID-19 patient samples simultaneously. (6) Advancement of the biosensor platform from a 96-well plate to a 384-well plate and its application in assaying microRNA for early diagnosis of pancreatic cancer. In this chapter, the high-throughput capabilities of the biosensor platform presented in Chapters 3-5 was expanded by increasing the sensor amount in one platform from 92 to 359. The 384-well plate biosensor platform was designed, optimized, and utilized to perform microRNA assays for early-stage pancreatic cancer diagnosis. The optimization of the biosensor platform included the manipulation of LSPR-based parameters and the -ssDNA receptor molecule in order to obtain low limit of detections (high sensitivity). Additionally, the biosensor platform assayed two microRNA in a large cohort (n=110) of pancreatic cancer and chronic pancreatitis patient samples. </p>

Cette thèse caractérise les propriétés optiques des matériaux plasmoniques microstructurés et procède à l’évaluation des paramètres analytiques afin de les employer comme plateforme de biodétection en spectroscopie de résonance des plasmons de surface (SPR). Aux dimensions micrométriques, les matériaux plasmoniques présentent des caractéristiques optiques propres aux nano- et macromatériaux. La cartographie physicooptiques en SPR de matériaux méso- et microscopiques s’est effectuée à l’aide de films structurés de motifs périodiques triangulaires et circulaires fabriqués par une technique modifiée de lithographie par nanosphères (nanosphere lithography, NSL). À partir de cette vue d’ensemble, quelques films structurés ont été sélectionné en fonction d’aspects analytiques tels que la sensibilité et la résolution face aux variations d’indice de réfraction (RI) pour déterminer le potentiel de ces matériaux comme plateforme de biodetection. Les propriétés optiques distinctes des films microstructurés proviennent d’interactions résonantes entre les modes de plasmons de surface (SP) localisé et délocalisé identifiés par la relation de dispersion en SPR ainsi que l’imagerie Raman. Les conditions de résonance des modes SP dépendant de paramètres expérimentaux (λ, θ, η) tel qu’observés numériquement par rigorous coupled wave analysis (RCWA) et empiriquement. Ces travaux démontrent la nature plasmonique distincte des micro-matériaux et leur potentiel d’intégration aux techniques analytiques SPR existantes. Les matériaux plasmoniques micrométriques furent également étudiés pour l’implémentation de la SPR à une pointe de microscopie à force atomique (atomic force microscopy, AFM) combinant ainsi la spectroscopie à l’imagerie topographique. Des travaux préliminaires se sont concentrés sur la signature spectroscopique de leviers en silicium (Si) et en nitrure de silicium (Si3N4), l’impact d’un revêtement d’or sur les pointes et l’influence de milieu environnant. Une image d’origine plasmonique a été obtenue avec des leviers en Si3N4 revêtus d’or en transmission dans un environnement aqueux, indiquant ainsi le potentiel de ces pointes comme micro-biocapteur SPR. Ces résultats préliminaires servent de fondement pour orienter les prochaines investigations dans ce projet. / This thesis characterizes the optical properties of microstructured plasmonic materials and evaluates analytical parameters to use them as biosensing platforms in surface plasmon resonance (SPR) spectroscopy. At microscopic dimensions, plasmonic materials present optical characteristics unique to nano- and macromaterials. A SPR physico-optic mapping of meso- and microscopic materials was performed using structured films with triangular and circular periodic patterns fabricate by modified nanosphere lithography (NSL) technique. From this overview, a few structured films were selected based on analytical aspects such as sensitivity and resolution with respect to the refractive index (RI) to determine the potential of these materials as biosensing platforms. The distinct plasmonic properties of microstructured films emerge from resonant interactions between localized and propagating surface plasmons (SP) modes identified by the SPR dispersion relation and by Raman imaging. The conditions of SP modes resonant interactions depend on experimental parameters (λ, θ, η) as observed numerically in rigorous coupled wave analysis (RCWA) and empirically. These works show the distinct plasmonic nature of micromaterials and their potential integration to existing SPR techniques. Plasmonic micromaterials were also studied for the implementation of SPR to an atomic force microscopy (AFM) cantilever, hence combining spectroscopy to topographic imaging. Preliminanry works were focused on the spectroscopic response of silicon (Si) and silicon nitride (Si3N4) cantilever, the impact of gold coating on the cantilever is tip, and the influence of the adjacent environment. An image of plasmonic nature was obtained in transmission spectroscopy with gold coated Si3N4 cantilever in water environment, thus indicating the potential of these cantilevers as micro-SPR sensing probes. These preliminary results provide a basis to guide future investigations in this project.