The atrioventricular junction (AVJ) is a complex anatomical structure. It has an important role in maintaining synchronised atrioventricular conduction and protects from ventricular tachycardia, as well as bradycardia. Its embryological development and function is under tight transcription factor control. Heart failure is a chronic systemic condition, affecting one million people in the UK alone. Slowing of atrioventricular conduction in heart failure is associated with increased morbidity and mortality. The molecular and anatomical basis of abnormal atrioventricular conduction was studied in a rabbit model of heart failure due to aortic insufficiency and abdominal aortic constriction. The PR interval was significantly prolonged in heart failure animals. Using laser-assisted microdissection, the tiny tissues of the AVJ were collected for RT-PCR analysis. HCN1, Cav1.3, Cx40 and Cx43 transcripts were significantly downregulated by heart failure, with a compensatory increase in CLCN2, Nav1.1, Navβ1, SUR2A and PAK1. Immunolabelling for Cx43 showed reduction in protein level and longitudinal dissociation not only in the inferior nodal extension but also in the His bundle in heart failure animals. Anatomical studies of the AVJ have previously been limited by its small size and inaccessible location. Contrast-enhanced micro-CT scanning allowed non-destructive imaging of the AVJ anatomy. AVJ length and volume were increased in the rabbit model of heart failure, which is expected to contribute to atrioventricular conduction abnormalities. Micro-CT additionally resolved the anatomy of the canine AVJ and atria, including fibre orientation in the pulmonary vein sleeves and Bachmann’s bundle. The physiological effects of loss of T-box transcription factor 5 (Tbx5) in the AVJ were studied in a transgenic inducible Tbx5 knockout mouse model using optical mapping. Tbx5-deficient mice had a prolonged PR interval in vivo and a higher incidence of atrioventricular block and ventricular conduction abnormalities in Langendorff-perfused hearts.

Autism spectrum disorder (ASD) is a neurodevelopmental disorder affecting social behaviors. ASD affects 1 in 59 children with males affected more frequently. ASD is postulated to result from excitatory and inhibitory neurotransmission imbalances. Brain-derived neurotrophic factor (BDNF) signaling affects ASD by influencing synaptogenesis, plasticity, and survival. Studying early in-utero neuropathological changes within ASD requires the use of animal models. Expression of BDNF-associated genes were analyzed within laser capture microdissected pyramidal neurons from the anterior cingulate cortex of male and female BTBR and valproic acid mouse models. No expression differences were found in any gene comparing the three groups. Gender comparisons did identify differences in NTRK2 and EFNB2. Significant correlations of gene expression were identified for male NTRK2 with EFNB2 and GRIN1 and EFNB2 with GRIN1 and female BDNF with GRIN1 expressions (p

No description available.

Many omics-level studies have been undertaken on Aiptasia, however, our understanding of the genes and processes associated with symbiosis regulation and maintenance is still limited. To gain deeper insights into the molecular processes underlying this association, we investigated this relationship using multipronged approaches combining next generation sequencing with metabolomics and immunohistochemistry. We identified 731 high-confident symbiosis-associated genes using meta-analysis. Coupled with metabolomic profiling, we exposed that symbiont-derived carbon enables host recycling of ammonium into nonessential amino acids, which may serve as a regulatory mechanism to control symbiont growth through a carbon-dependent negative feedback of nitrogen availability to the symbiont. We then characterized two symbiosis-associated ammonium transporters (AMTs). Both of the proteins exhibit gastrodermis-specific localization in symbiotic anemones. Their tissuespecific localization consistent with the higher ammonium assimilation rate in gastrodermis of symbiotic Aiptasia as shown by 15N labeling and nanoscale secondary ion mass spectrometry (NanoSIMS). Inspired by the tissue-specific localization of AMTs, we investigated spatial expression of genes in Aiptasia. Our results suggested that symbiosis with Symbiodiniaceae is the main driver for transcriptional changes in Aiptasia. We focused on the phagosome-associated genes and identified several key factors involved in phagocytosis and the formation of symbiosome. Our study provided the first insights into the tissue specific complexity of gene expression in Aiptasia. To investigate symbiosis-induced response in symbiont and to find further evidence for the hypotheses generated from our host-focused analyses, we explored the growth and gene expression changes of Symbiodiniaceae in response to the limitations of three essential nutrients: nitrogen, phosphate, and iron, respectively. Comparisons of the expression patterns of in hospite Symbiodiniaceae to these nutrient limiting conditions showed a strong and significant correlation of gene expression profiles to the nitrogen-limited culture condition. This confirmed the nitrogen-limited growing condition of Symbiodiniaceae in hospite, and further supported our hypothesis that the host limits the availability of nitrogen, possibly to regulate symbiont cell density. In summary, we investigated different molecular aspects of symbiosis from both the host’s and symbiont’s perspective. This dissertation provides novel insights into the function of nitrogen, and the potential underlying molecular mechanisms, in the metabolic interactions between Aiptasia and Symbiodiniaceae.

Retia mirabile of the eel swimbladder were exsanguinated, perfusion‐fixed and subjected to prolonged osmication. They were then microdissected by ultrasonication which delaminated the capillary bed along planes which revealed the surfaces of arterial and venous capillaries. This procedure resulted in cleaned capillary surfaces largely free of connective tissue elements and basement membrane material. The arterial capillary segments were heavily invested with pericytes characterized by plump cell bodies containing nuclei and an extensive system of processes encircling the capillary wall. These processes exhibited a hierarchical organization consisting of primary, secondary, and tertiary elements arising roughly at right angles to each other. Primary and secondary processes exhibited frequent anastomoses and resulted in cytoplasmic continuity between adjacent cell bodies. Processes were also observed to form connections between pericytes on adjacent capillaries. These observations are evidence for the existence of a pericapillary syncytium in which cell bodies may be connected in series and in parallel throughout the arterial capillary bed. This syncytial organization would provide for a coordinated and global contractile response of pericytes to vasoactive hormones and other effectors. It may also provide for synchrony of nuclear division during developmental spread of pericytes along capillary surfaces.

No description available.

Cette thèse porte sur l’estimation d'une fonction de régression fournissant la meilleure relation entredes variables pour lesquelles on possède un certain nombre d’observations. Une première partie portesur une étude par simulation de deux méthodes automatiques de sélection du paramètre de laprocédure d'estimation ridge. D'un point de vue plus théorique, on présente et compare ensuite deuxméthodes de sélection d'un multiparamètre intervenant dans une procédure d'estimation d'unefonction de régression sur l'intervalle [0,1]. Dans une deuxième partie, on étudie la qualité del'estimateur PLS1, d'un point de vue théorique, à travers son risque quadratique et, plus précisément,le terme de variance dans la décomposition biais/variance de ce risque. Enfin, dans une troisièmepartie, une étude statistique sur données réelles est menée afin de mieux comprendre la signaturegénique de cellules cancéreuses à partir de la signature génique des sous-types cellulaires constituantle stroma tumoral associé / This thesis deals with the estimation of a regression function providing the best relationship betweenvariables for which we have some observations. In a first part, we complete a simulation study fortwo automatic selection methods of the ridge parameter. From a more theoretical point of view, wethen present and compare two selection methods of a multiparameter, that is used in an estimationprocedure of a regression function on [0,1]. In a second part, we study the quality of the PLS1estimator through its quadratic risk and, more precisely, the variance term in its bias/variancedecomposition. In a third part, a statistical study is carried out in order to explain the geneticsignature of cancer cells thanks to the genetic signatures of cellular subtypes which compose theassociated tumor stroma

Cromossomos sexuais evoluíram repetidas vezes independentemente nos grandes grupos de vertebrados. Sistemas sexuais altamente diferenciados e antigos são caracterizados por grandes diferenças morfológicas e de conteúdo gênico entre os dois cromossomos homólogos onde a recombinação é restrita a uma pequena região homóloga. Os sistemas recentes característicos de peixes caracterizam-se pela similaridade entre os cromossomos X e Y (ou Z e W), nos quais as diferenças observadas freqüentemente envolvem a presença de heterocromatina, translocações e inversões. A recombinação ocorre entre o par sexual na maior parte de sua extensão, sendo inibida apenas na região diretamente relacionada com a determinação sexual. Notavelmente, sistemas diferentes de determinação podem ser encontrados em espécies, ou mesmo populações. O gênero Eigenmannia compreende grupos de espécies crípticas do ponto de vista morfológico que exibem variação no número cromossômico e podem apresentar sistemas sexuais XY ou ZW, incluindo sistemas múltiplos (com translocação Y-autossomo). Estes sistemas estão entre os mais recentes descritos (<16ma) e estão dispostos de forma desordenada em árvores de relações filogenéticas, sugerindo origens múltiplas. No presente estudo, a técnicas de pintura cromossômica usando sondas obtidas por microdissecção de cromossomos sexuais foram empregadas para testar a homologia de dois sistemas XY encontrados nos citótipos (ou espécies) E. virescens e E. sp.2. Os resultados mostram que, de fato, ambos são não homólogos. A fusão Y-autossomo provavelmente ocorreu após a separação de E. sp.2 com sua espécie irmã, E. sp.1 uma vez que um evento de fusão independente, envolvendo um dos cromossomos homólogos ao Y, foi detectado em E. sp.1. A hibridação in sit&#956; do cromossomo X de E. virescens em sua população mais próxima (também com 38 cromossomos, mas sem cromossomos sexuais heteromórficos) mostrou que o cromossomo X é homólogo a um par de acrocêntricos, condizente com o modelo proposto de diferenciação por acúmulo de heterocromatina. Essa heterocromatina foi caracterizada e mostrou um padrão complexo de seqüências CG-ricas. Dois fragmentos de DNA repetitivo GC-ricos presentes no cromossomo X foram isolados e seqüenciados. Não foram detectadas similaridades em comparações com bases de dados e entre os fragmentos obtidos. Estes mostraram-se concentrados nas regiões cromomicina-positivas de E. virescens, incluindo regiões periteloméricas de sete pares e os dois maiores blocos heterocromáticos (nos cromossomos X e par n. 8), além de um cromossomo acrocêntrico, possivelmente o Y. Curiosamente, essas seqüências foram detectadas em apenas três pares cromossômicos na população mais próxima, incluindo um par acrocêntrico de morfologia semelhante à condição ancestral do X, sugerindo que processos dinâmicos de expansão e homogenização genômica ocorreram após a separação dessas populações / Sex chromosomes have evolved independently several times in all major groups of vertebrates. Highly differentiated sex chromosomes are characterized by extensive differences in morphology and gene content, whereas recombination is restricted to a small homologous region. Recent sex chromosomes are characteristic of fish, and display a high level of homology between X and Y (or Z and W) chromosomes, recombination is restricted only in a small sex determining region. Notably, different sex chromosome systems can be found in closely related groups, such as species or even populations. The genus Eigenmannia comprises a group of morphologically cryptic species that display a variety of diploid numbers and different sex chromosome systems, including XY, ZW and a multiple XY system (with a Y-autosome fusion). These systems are among the most recent known (<16ma) and occur with a lack of phylogenetic pattern, whereas frequently populations bearing heteromorphic sex chromosomes are closest related to populations displaying no sex chromosomes. In the present study, chromosome painting using probes derived from the microdissection of two different sex chromosomes where used to investigate the homology of both systems. Results show that, in fact, they are non-homologous and evolved independently. The Y-autosome hypothesis gained further support from the observation that a chromosome homologous to the Y in a close population is involved in yet a different fusion event. The X chromosome present in the E. virescens karyotype was found to be homologous to acrocentric chromosomes in all populations analyzed, thus supporting the notion that its differentiations is mainly due to the accumulation of heterochromatin. The X heterochromatic block was shown to form a complex pattern of GC-rich sequences, different from what was previously described. Two GC-rich fragments were isolated and sequenced; both showed no similarities to known sequences and to one another. These sequences were shown to be concentrated viii on the two largest heterochromatic blocks, those of the X and n.8 chromosomes besides peri-telomeric regions of seven additional pairs and the putative Y. Curiously, these sequences were detected in only three pairs in the closest population, including an acrocentric pair morphologically similar to undifferentiated sex pair. This suggests that dynamic evolutionary processes of expansion and genomic homogenization have occurred after the separation of these populations.

INTRODUÇÃO: A exposição prolongada às partículas ambientais está associada à mortalidade prematura devido às causas cárdio-respiratórias e ao câncer do pulmão. O tamanho e composição destas partículas estão relacionados à maior toxicidade, agravada pela retenção prolongada destas partículas no pulmão. Pode-se postular que partículas com diferentes composições elementares podem ter distribuição diferente ao longo da árvore traqueobrônquica. A captura por micro-dissecção a laser (CML) aparece neste cenário como uma alternativa rápida e eficaz para se obter amostras para estudo da distribuição destas partículas no pulmão. OBJETIVOS: Testar a eficácia da CML no estudo de partículas retidas no pulmão comparando com outra técnica de análise de cortes de parafina (P), já consagrada na literatura. Comparar também o perfil elementar de partículas retidas ao longo da árvore traqueobrônquica e linfonodos em duas cidades com perfis distintos de poluição, através da CML, associada à espectometria de raios-X por dispersão de energia (RX-DE) aliada à microscopia eletrônica de varredura (MEV). MÉTODOS: Vinte e quatro casos autopsiados foram obtidos em duas cidades com perfis distintos de poluição (São Paulo e São José do Rio Preto). As amostras de parênquima pulmonar obtidas do lobo médio do pulmão direito foram coletadas em três regiões: tecido peribrônquico, parênquima pulmonar periférico e linfonodos hilares. Para P, a análise foi feita em áreas visualizadas no MEV correspondentes às áreas de antracose. Estas áreas de antracose foram também micro-dissecadas, usando CML e analisadas através do RX-DE aliado ao MEV. RESULTADOS: Quando os dois métodos foram comparados, a maioria dos elementos encontrados, mostrando diferença significante, foi vista na CML, exceto pelo Ca e Mg (mais comumente encontrados em P). A análise elementar das partículas depositadas ao longo da árvore traqueobrônquica mostra dois grupos de distribuição dos elementos, com deposição predominante peribronquiolar ou com deposição predominante linfonodal. A análise elementar das áreas peribrônquicas descrimina melhor (95.8 %), o tipo de exposição à poluição, sem diferença significante para os outros locais estudados. CONCLUSÃO: Os perfis elementares das partículas retidas ao longo da árvore traqueobrônquica mostram dois grupos com padrão de distribuição distinta. A região proximal é o principal local para discriminação do tipo de exposição do indivíduo, sendo a antracose o carimbo da exposição à poluição. A CML se mostrou também uma ferramenta útil para discriminar áreas de interesse no estudo da análise elementar de partículas retidas no pulmão quando comparada com a análise nos cortes de parafina. / RATIONALE: Prolonged exposure to ambient particles is associated with premature mortality due to cardio respiratory diseases and lung cancer. Size and composition of these particles determine toxicity, aggravated by their long term retention in the lungs. In this context, it is plausible to postulate that different particles with different elemental composition must have distinct distribution patterns along the bronchial tree. Laser capture microdissection (LCM) appears as a rapid and efficient alternative for obtaining representative lung tissue for particle analysis. OBJECTIVES: To test laser capture microdissection (LCM) as a new tool for studying particle retention, comparing to a classical method using paraffin sections (PS). To compare the elemental profile of particles retained along the bronchial tree and lymph nodes in two cities with distinct pollution backgrounds by using LCM, through energy dispersive x-ray (EDX) and scanning electron microscopy (SEM). METHODS: Twenty-four right lung middle lobes from autopsied cases were obtained in two cities with different pollution backgrounds. Lung samples were collected from three distinct regions in the lungs at the time of autopsy: peribronchial tissue, peripheral parenchyma and hylar lymph nodes. For PS, analysis was performed in areas visualized in the SEM correspondent to anthracotic areas. These areas of anthracosis were also microdissected using LCM and analyzed for elemental composition through EDX allied to SEM. RESULTS: When the two methods were compared, the majority of the elements showing significant difference was predominantly found when LCM was used, except for Ca and Mg (more related to PS) Elemental analysis of particles deposited along the bronchial tree shows two groups of distribution: elements with preferable peribronchiolar or preferable lymph node deposition. Elemental profile of peribronchial areas discriminate accurately (95.8 %) the type of pollution exposure, with no statistical difference noted for the other sites. CONCLUSIONS: Elemental profiling of the particles retained along the bronchial tree shows two groups with distinct distribution patterns. The proximal bronchial tree is the main site for discrimination of pollution exposure, with an elemental finger print of anthracosis. LCM has also proven to be a useful tool in discriminating areas of interest for elemental analysis of particles retained in the lung when compared to analysis in PS.

Muscle fiber composition correlates with insulin resistance, and exercise training can increase slow-twitch (type I) fibers and, thereby, mitigate diabetes risk. Human skeletal muscle is made up of three distinct fiber types, but muscle contains many more isoforms of myosin heavy and light chains, which are coded by 15 and 11 different genes, respectively. Laser capture microdissection techniques allow assessment of mRNA and protein content in individual fibers. We found that specific human fiber types contain different mixtures of myosin heavy and light chains. Fast-twitch (type IIx) fibers consistently contained myosin heavy chains 1, 2, and 4 and myosin light chain 1. Type I fibers always contained myosin heavy chains 6 and 7 (MYH6 and MYH7) and myosin light chain 3 (MYL3), whereas MYH6, MYH7, and MYL3 were nearly absent from type IIx fibers. In contrast to cardiomyocytes, where MYH6 (also known as α-myosin heavy chain) is seen solely in fast-twitch cells, only slow-twitch fibers of skeletal muscle contained MYH6. Classical fast myosin heavy chains (MHC1, MHC2, and MHC4) were present in variable proportions in all fiber types, but significant MYH6 and MYH7 expression indicated slow-twitch phenotype, and the absence of these two isoforms determined a fast-twitch phenotype. The mixed myosin heavy and light chain content of type IIa fibers was consistent with its role as a transition between fast and slow phenotypes. These new observations suggest that the presence or absence of MYH6 and MYH7 proteins dictates the slow- or fast-twitch phenotype in skeletal muscle. The technical challenges of human skeletal muscle fiber type identification have evolved over the past three decades (8). The typical normal adult has roughly equal amounts of slow- and fast-twitch fibers, designated type I and II fibers. In addition, a variable portion of the type II fibers is mixed, containing both fast- and slow-twitch fiber markers, called type IIa fibers, whereas type II fibers that contain only the fast-twitch phenotype are designated type IIx in humans. Exercise training can cause modest shifts in fiber composition from one of these types to a contiguous type, with the relationship being type I to IIa to IIx or type IIx to IIa to I. The tail end of each myosin heavy chain is attached to the tail of another myosin heavy chain, and each of these forms a complex with two myosin light chains. Many heavy and light chain complexes are intertwined to form the thick filaments of each sarcomere. Thin filaments are composed of actin, troponin, and tropomyosin. The myosin heavy chains contain ATPase, which is essential for shortening of the contractile apparatus in the sarcomere, resulting in muscle-generated movement of a body part. The pH optimum of the ATPase has been classically the histochemical technique for identifying fast, slow, and mixed fibers. However, for more than a decade, monoclonal antibodies that correlated with the ATPase designation of fast, slow, and mixed fibers by bright-field or immunohistochemical methods have been used (2). The widely used fast and slow myosin monoclonal antibodies were obtained from mice immunized with only partially purified human skeletal muscle myosin antigens. More recently, antibodies that were raised against specific individual myosin heavy and light chain proteins became commercially available. The 15 human genes that code myosin heavy chains are designated MYH1, MYH2, MYH3, MYH4, MYH6, MYH7, MYH7B, MYH8, MYH9, MYH10, MYH11, MYH12, MYH13, MYH14, MYH15, and MYH16 (17). MYH9, MYH10, and MYH11 are expressed primarily in smooth muscle. At least eight separate genes that code myosin light chains, MYL1, MYL2, MYL3, MYL4, MYL5, MYL6, MYL6B, and MYLPF, have been identified, and at least three of these have a second isoform (3). Our initial investigation of the expression of myosin heavy and light chains using laser capture microdissection (LCM) to obtain specific fiber type samples from human vastus lateralis biopsies yielded some unexpected results. These observations led us to question which isoforms of myosin heavy and light chains are actually characteristic of “fast” or “slow” fibers in human skeletal muscle. We used immunoblots, mass spectroscopic (MS) proteomics, and next-generation sequencing of muscle homogenates and of LCM-generated samples of individual fiber types from normal control subjects and subjects with extremely different muscle fiber composition to approach this question by evaluating muscle specimens from subjects with diverse and extremely different fiber compositions. The hypothesis that drove these studies was that fibers of each type would have consistent myosin heavy and light chains that are characteristic of the fiber type. This is the first report that the abundance of different myosin heavy and light chains corresponds to different muscle fiber types.