One of the largest problems in current medicine is the shortage of organs for transplant due to technological limitations in the storage of organs for any length of time. A possible solution to this problem would involve cryopreservation. However, current cryopreservatives such as sucrose or DMSO have concerning cytotoxic issues that limit their possible applications. A major cause of cryoinjury is the uncontrolled recrystallization of inter and intra-cellular ice crystals that occurs during the thawing process leading to mechanical damage and dehydration. The Ben lab has thus been interested in the design of compounds that are capable of inhibiting this process but do not possess other undesirable properties found in the native compounds. These synthetic analogues have been shown to increase cellular viability post-thaw. A series of mixed α/β glycopeptides are prepared and analyzed for antifreeze properties. The results of this study imply that it is not the gross conformation of the glycopeptide that is responsible for activity, but rather that intramolecular relationships may be responsible for disrupting the reorganization of ice. A technique was devised for the incorporation of triazoles into the analogues to investigate the importance of the linker and to greatly simplify the synthesis of a library of glycoconjugates. It was found that the IRI activity of glycopeptides is very sensitive to the distance between carbohydrate and peptide backbone. The electron density at the anomeric oxygen is an important parameter with respect to intramolecular networks. A series of substituted galactosides is presented that modify the electronics of the anomeric oxygen. The results demonstrate that decreasing electron density at this position appears to improve IRI activity in a predictable manner. To better understand the remarkable IRI activity of a key analogue, it was systematically truncated. This study led to the serendipitous discovery of a series of very highly IRI active analogues that do not contain a peptide backbone. These compounds represent the first non-glycopeptides that can show very significant IRI activity even at very low concentrations. The final portion of the thesis reports the efforts towards the preparation of a carbasugar analogue of AFGP-8.

Over the past decade, solid-state nanopores have emerged as a versatile tool for the detection and characterization of single molecules, showing great promise in the field of personalized medicine as diagnostic and genotyping platforms. While solid-state nanopores offer increased durability and functionality over a wider range of experimental conditions compared to their biological counterparts, reliable fabrication of low-noise solid-state nanopores remains a challenge. In this thesis, a methodology for treating nanopores using high electric fields in an automated fashion by applying short (0.1-2 s) pulses of 6-10 V is presented which drastically improves the yield of nanopores that can be used for molecular recognition studies. In particular, this technique allows for sub-nanometer control over nanopore size under experimental conditions, facilitates complete wetting of nanopores, reduces noise by up to three orders of magnitude and rejuvenates used pores for further experimentation. This improvement in fabrication yield (over 90%) ultimately makes nanopore-based sensing more efficient, cost-effective and accessible. Tuning size using high electric fields facilitates nanopore fabrication and improves functionality for single-molecule experiments. Here, the use of nanopores for the detection of DNA-protein complexes is examined. As proof-of-concept, neutravidin bound to double-stranded DNA is used as a model complex. The creation of the DNA-neutravidin complex using polymerase chain reaction with biotinylated primers and subsequent purification and multiplex creation is discussed. Finally, an outlook for extending this scheme for the identification of proteins in a sample based on translocation signatures is presented which could be implemented in a portable lab-on-a-chip device for the rapid detection of disease biomarkers.

In order for molecular magnetic materials to become applicable, they must retain their magnetisation at reasonable temperatures, which can be achieved with high energy barriers for spin reversal and high blocking temperatures. In the field of Single-Molecule Magnets (SMMs), over the last decade, the main focus has shifted from large spin complexes to highly anisotropic systems which have displayed record energy barriers. There are two main methods of increasing magnetic anisotropy in a complex: i) Choosing a metal ion that boasts high magnetic anisotropy then coupling two such ions through magnetic interactions to induce large global anisotropy, and ii) maintain a low spin or use a mononuclear complex while minimising quantum tunnelling of the magnetisation by controlling the geometric features of the metal ion. Both strategies are equally valid and have been explored in this thesis using dinuclear lanthanide as well as mononuclear 3d complexes. In the pursuit of high-barrier SMMs via alignment of anisotropy axes, two dinuclear, quadruple-stranded helicates and one mesocate were isolated and are described in detail herein, both structurally and magnetically. Furthermore, theoretical calculations have been performed to determine the energies of Kramers doublets on each DyIII centre to derive magneto-structural correlations. To induce magnetic interactions between DyIII ions, a centrosymmetric dinuclear SMM was synthesised. Investigation of the crucial DyIII…DyIII interaction as well as its effect on the quantum tunnelling of the magnetisation has been carried out using ab initio calculations and magnetic dilution studies. Using the same system, a method of greatly enhancing the energy barriers in SMMs has been developed. It involves modifying the coordinating ligands to include electron withdrawing groups in order to yield more anisotropic metal ions. The energy barrier for spin reversal has been increased 7-fold in one case. While lanthanide chemistry has proven to be quite versatile and promising, a new branch of nanomagnets is currently being pursued: mononuclear 3d complexes as SMMs. The advantages of 3d metals include high anisotropy per ion, low spin (as anisotropy decreases with increasing spin), well-understood electronic structures and clear correlations between geometry and magnetic anisotropy. The structural and magnetic properties of three complexes based on CoII and terpyridine ligands as well as a seven-coordinate CoII complex with positive anisotropy are discussed at length. The unique slow relaxation dynamics and spin crossover behaviour has been followed using DFT and ab initio calculations, as well as EPR and magnetic dilution studies. Overall, this thesis describes the efforts taken to synthesise high-barrier nanomagnets through understanding the origins and mechanisms of slow magnetic relaxation in both lanthanide and 3d metal complexes.

Molecular Nanomagnets have been proposed as plausible candidates in a variety of futuristic applications. Thorough understanding of the magnetic properties of these systems is therefore necessary to develop devices that include such units. The aim of this thesis is to synthesise and structurally and magnetically characterise a range of systems that could be used as elementary units in three proposed applications such as: data storage devices, magnetic refrigerants and qubits for quantum computing. A series of mixed 3d/4f metal complexes were synthesised through solvothermal reactions and characterised by X-ray single crystal diffraction and SQUID magnetometry. Through indirect methods it was possible to obtain high magnetic entropy change for some systems. It was also possible to obtain some insight into the magnetic interactions within the systems through modelling the magnetic data. The role of the 4f-4f and 3d-4f interactions in two sets of molecules is also described. The first study is in an asymmetric dysprosium dimer, where through a range of experimental techniques and advanced theoretical methods, such ab-initio calculations we are able to explain the role of the intramolecular interactions and their effect on the SMM properties of this system. Similarly, insight into the role of the 3d-4f interactions is achieved through the observation of the magnetic behaviour of a family of 27 tetranuclear systems, though SQUID data and ab-initio calculations. Finally, chemical functionalization of a well-proposed qubits, namely {Cr7Ni} and subsequent reaction with a redox active metal ion, CoII/III, two {Cr7Ni} systems are linked. The magnitude of the exchange interaction between the {Cr7Ni}-CoII-{Cr7Ni} was determined through Electron Paramagnetic Resonance. Furthermore, by chemical oxidation/reduction of the cobalt between paramagnetic and diamagneticstates, i.e. CoII and CoIII respectively, we demonstrate that the interaction can be switched ON/OFF. This characteristic makes of these systems candidates to function as a SWAP gate.

The introductory Chapter to this thesis outlines fundamental aspects of 4f lanthanide(III) coordination chemistry, in particular compounds that possess the intriguing properties of slow relaxation of magnetisation, (or the ability to behave as single-molecule magnets, SMMs). The recent renaissance into the study of the magnetic behaviour of 4f-coordination complexes has led to the consideration of utilising organometallic precursors for the development of novel lanthanide containing compounds, which may possess interesting magnetic properties, subsequently forming the basis of Chapter Two. In Chapter Two, the syntheses and structures of the novel lithiated thiolate ligand, lithium triphenylsilylthiolate, (Ph3SiS-Li) (2.1), and the sulfur-bridged, dimetallic dysprosium(III) and gadolinium(III) complexes [(MeCp)2Dy(µ-SSiPh3)]2 (2.2) and [(MeCp)2Gd(µ-SSiPh3)]2 (2.3), are described in detail. The structural and physical properties of these compounds are analysed through NMR, elemental analysis and SQUID magnetometry, alongside supporting theoretical calculations to reveal that compound 2.2 is the first dimetallic, sulfur-bridged SMM reported, giving an energy barrier to the reversal of magnetisation of Ueff = 192 ± 5 K.56bChapter Three reports on the structural development of a series of lanthanide monomers, exhibiting the general motif [Ln(OSiPh3)3(THF)3] (where Ln = Dy(3.4), Er(3.5), Ho(3.6), Gd(3.7), Tb(3.8)), exploiting the siloxide ligand Ph3SiOH through two novel synthetic routes. This Chapter also provides new analytical insight to these complexes by exploring their magnetic properties through a series of SQUID measurements and through the analysis of their electronic properties using air sensitive, variable temperature optical absorption spectroscopy. Compounds 3.4 and 3.5 were revealed to be SMMs, with 3.5 having a much higher thermal barrier to the reversal of magnetisation, Ueff = ~ 28 K, than 3.4, which are supported by theoretical analysis. Chapter Four describes the utility of ligand 2.1 and Ph3SiOH in the context of 3d transition metal cyclopentadienyl chemistry, outlining the syntheses and structures of three distinct compounds; the trimetallic, [Cp2Mn3(µ-OSiPh3)4](4.7), the hetero-cubane tetramer [CpMn(µ-SSiPh3)]4 (4.8) and the dimetallic thiolate-bridged [CpCr(µ-SSiPh3)]2 (4.9) compound. These compounds were formed in reactions exploiting organometallic manganocene and chromocene precursors. Magnetic susceptibility measurements were conducted on these compounds to gain further insight into their structural properties. The magnetic exchange coupling constants for Mn(II) compounds 4.7 and 4.8 were J = - 4.4 cm-1 and J = - 3.0 cm-1 respectively. Furthermore, having demonstrated the use of metal-cyclopentadienyl building blocks in the synthesis of novel SMMs, Chapter Five discusses the possibility of further advancement on the development of this class of magnetic molecules.

Os artrópodes constituem o grupo mais diverso do Reino Animal, apresentando uma distribuição muito ampla nos ecossistemas e habitats. O fato de esses animais terem mudado muito pouco durante sua evolução e estarem bem adaptados aos ambientes inóspitos e com uma alta presença de microorganismos patogênicos, torna interessante a realização de estudos sobre o seu sistema imunológico. Parte importante deste sistema são os peptídeos antimicrobianos, que controlam a invasão dos diferentes patógenos. Estas moléculas não só podem fornecer informação sobre o sistema imune e o funcionamento deste, como também pode ajudar a buscar alternativas nas lutas contra as doenças infecciosas. Sendo assim, se torna interessante a purificação e a caracterização dos peptídeos antimicrobianos presentes nesses animais como também o conhecimento do funcionamento de seu sistema imune. Neste trabalho foram utilizadas duas espécies da ordem quilópoda: Scolopendra viridicornis e Otostigmus cavalcanti como modelo experimental. Foi avaliada a presença de moléculas bioativas na hemolinfa (plasma e hemócitos) e no extrato total do corpo, bem como a produção destas moléculas após o animal receber um estímulo ou injúria. Foi observada a presença de diferentes frações com atividade antimicrobiana na hemolinfa (plasma e hemócitos) e no extrato total de animais desafiados e não desafiados em Otostigmus cavalcanti, apresentando um aumento na atividade antimicrobiana nos animais do grupo estimulado. O que pode significar que algumas das moléculas antimicrobianas estão presentes constitutivamente no animal enquanto outras precisam de um estímulo para ser expressas. No plasma de S. viridicornis foram observadas diferentes frações com atividade antimicrobiana, observando-se atividade contra a bactéria Gram-negativa E coli e contra a levedura C. albicans. No entanto, nos hemocitos, diferentes frações apresentaram atividade somente contra a bactéria Gram-positiva M. luteus. Na porção hidrofóbica do extrato total do corpo de S. viridicornis também foram observadas diferentes frações com atividade antimicrobiana. No material eluído em 5% de ACN, por análise de ESI-MS de uma fração com atividade contra M. luteus foram observadas duas moléculas com massa molecular baixa (848,49 e 861,94 Da). Ainda no extrato total da fração hidrofóbica foram observadas duas moléculas que se apresentaram puras. A primeira destas mostrou uma massa molecular de 1,7 kDa mas ainda não foi caracterizada. Enquanto a segunda evidenciou um peptídeo de 925,4658 Da e cuja estrutura primaria apresentou um composto de 8 resíduos de aminoácidos (RYPAVGYT). Esta molécula foi nomeada Lacraina. Entretanto na porção hidrofílica do extrato total de S. viridicornis e de Otostigmus cavalcanti foram observadas frações de baixa massa molecular com atividade antiparasítica contra Leishmania amazonensis e Trypanosoma brucei e antibacteriana contra E. coli e M. luteus. Também nesta fração foi observada uma molécula semelhante à Gomesina um peptídeo antimicrobiano da aranha caranguejeira Acanthoscurria gomesiana. A análise e caracterização desta molécula ainda esta em progresso. / Arthropods constitute the most diverse group in the Animal Kingdom, representing a very wide distribution in different ecosystems and habitats. The fact that these animals have changed very little during their evolution and that theyre well adapted to harsh environments with a high presence of pathogenic microorganisms, makes it interesting to conduct studies on their immune system. An important part of these systems are antimicrobial peptides that control the invasion of various pathogens. These molecules not only provide us with information on their immune system and its functioning, but can also help us find alternatives in the struggle against infectious diseases. Therefore, the purification and characterization of antimicrobial peptides present in these animals becomes important, as well as gaining knowledge on how their immune systems work. In this work two specimens of the Chilopoda order, Scolopendra viridicornis and Otostigmus cavalcanti, were used as an experimental model for the characterization of bioactive molecules present in the hemolymph and total body extract as well as the production of these molecules after stimulating or injuring the animal. The presence of different fractions with antimicrobial activity in the hemolymph (plasma and hemocytes) and the total body extract of defied and not defied animals in Otostigmus cavalcanti was observed. Presenting an increase in the antimicrobial activity in the stimulated group of animals, this could mean that some of the antimicrobial molecules are constitutively present in the animal, while others need to be induced to be expressed. In the plasma of S. viridicornis different fractions with antimicrobial activity and with activity against the Gram-negative bacteria E coli and against the C. albicans yeast were observed. Notwithstanding, in the hemocytes, there are different fractions that presented activity only against the Gram-positive M. luteus bacteria. In the hydrophobic portion of the total extract of the S. viridicorniss body, different fractions with anti-microbial activity were also observed. In the 5% ACN eluted material, by an ESI-MS analysis of a fraction with activity against M. luteus two molecules with low molecular mass (848.49 and 861.94 Da) were present and two pure molecules were observed in the total extract of the hydrophobic fraction. The first one presented a molecular mass of 1.7 kDa that remains to be characterized. The second one was a 925.4658 Da peptide, whose primary structure presented a compound of 8 amino acid residues (RYPAVGYT). This molecule was named Lacrain. However, in the hydrophilic portion of the total extract of S. viridicornis and O. cavalcanti low molecular mass fractions with antiparasitic activity against Leishmania amazonensis and Trypanosoma brucei as well as antibacterial activity against E. coli and M. luteus were observed. Also in this fraction a molecule similar to Gomesin, an antimicrobial peptide from the spider Acanthoscurria gomesiana. was present. The analysis and characterization of this molecule is still in progress.

La recombinaison dissociative (RD) est le processus dans lequel un ion moléculaire positif se recombine avec un électron et se dissocie après en fragments neutres. Parmi les différents types de réactions entre ions moléculaires et électrons, la RD mérite une attention particulière à cause du rôle important qu'elle joue dans les plasmas à basse température et de faible densité, telles que celles rencontrées dans les ionosphères planétaires et les nuages interstellaires. En dépit de l'apparente simplicité de la RD, son étude s'est avéré difficile aussi bien du point de vue expérimental que théorique. Afin d'apporter plus de lumière sur ce processus, la technique de la post-décharge en écoulement a été introduite et a été largement utilisée ces dernières décennies. La présente thèse est dédiée aux études expérimentales de la réaction RD, à l'aide du spectromètre de masse à sonde Langmuir (FALP-MS) en post-décharge en écoulement, à l'Université de Rennes 1, à Rennes, en France. Nous avons étudié la réaction RD à température ambiante a été étudiée pour les ions moléculaires d'acétone ( ) et les cations de diméthylamine cations ( ainsi que les vitesses de réaction des cations de triméthylamine ( cations, et nous avons obtenu des valeurs avec des incertitudes de of ± 30 %. De plus, nous avons étudié l'attachement électronique à la diméthylamine neutre et nous avons trouvé une constante de vitesse de = 4.81 x 10-10 cm3 s-1. Un nouveau système d'injection pour l'anneau de stockage électrostatique de KACST a été conçu et construit dans le laboratoire de l'IPR à Rennes. Le couplage de la source d'ions avec un analyseur de masse quadripolaire et l'utilisation d'un système de vannes pulsées assurant un pompage différentiel entre différentes régions de la ligne d'injection constitue une méthode nouvelle dans le contexte d'un anneau de stockage. Le but final de ce projet est l'étude des réactions à ions lourds tels que les ions moléculaires biologiques. / Dissociative recombination (DR) is a process in which a positive molecular ion recombines with an electron and subsequently dissociates into neutral fragments. Among the different types of molecular ion-electron reactions DR deserves particular attention due to the important role it plays in low-temperature and low-density plasmas such as those encountered in planetary ionospheres and interstellar clouds. Despite the apparent simplicity of the DR reaction, its investigation has proven to be a difficult task from both experimental and theoretical perspectives. In order to shed more light upon this process the flowing afterglow technique has been introduced and utilised extensively for the last few decades. This thesis is devoted to experimental studies into the DR reaction using the flowing afterglow Langmuir probe mass spectrometer FALP-MS at the University of Rennes 1, in Rennes, France. The DR reaction at room temperature has been investigated for the acetone molecular ions ( ) and dimethylamine cations ( as well as the reaction rates of trimethylamine ( cations, and the obtained values were with uncertainties of ± 30 %. In addition, the electronic attachment to neutral dimethylamine was also studied and the rate constant was determined to be = 4.81 x 10-10 cm3 s-1. A new ion injection system system for the KACST electrostatic storage ring has been designed and built in the IPR laboratory in Rennes. The coupling of an ion source with a quadrupole mass analyzer and the use of a gas pulsing system to maintain the differential pumping between different regions of the injection line, is a novel technique for use with a storage ring. The final goal of this system is to study the reactivity of heavy ions such as biological molecular ions.

Le moment angulaire est une quantité essentielle pour l'étude d'objets en interaction. Tout comme la matière, un rayonnement porte du moment angulaire. Il se décompose en deux composantes, moment angulaire de spin (MAS) et moment angulaire orbital (MAO). Chacune de ces composantes a des propriétés spécifiques et ont donné lieu à de nombreuses applications en utilisant de la lumière dans le domaine visible et infrarouge. Dans cette thèse, nous nous proposons d'étudier le comportement des deux types de moment angulaire de la lumière dans un processus très non-linéaire appelé génération d'harmoniques d'ordre élevé (GHOE). Dans ce processus physique connu depuis 1987, un laser infrarouge intense est focalisé dans un jet d'atomes ou de molécules, ce qui dans le bon régime d'intensité permet de générer un rayonnement à courte longueur d'onde (domaine extrême ultraviolet) et extrêmement bref (attoseconde, 1 as = 10⁻¹⁸ s). Nous commençons par décrire théoriquement ce processus, ainsi que définir de manière approfondie la notion de moment angulaire de la lumière. Nous étudions ensuite la GHOE à partir d'un faisceau infrarouge portant du MAO, ce qui nous permet d'obtenir une source unique, générant des impulsions lumineuses ultrabrève de moment angulaire orbital contrôlé et de longueur d'onde de l'ordre de 10nm. Nous étudions étudions la GHOE à partir de faisceaux portant du MAS. En utilisant une résonance du gaz de génération, nous parvenons à transmettre ce moment angulaire au rayonnement extrême ultraviolet. Ce rayonnement est ensuite utilisé pour mesurer des dichroïsmes circulaires de photoionisation dans des molécules chirales, mesures auparavant réservées aux sources synchrotrons. Ceci ouvre la voie à des mesures chirotpiques résolues en temps à l'échelle femto/attoseconde. / Angular momentum is an ubiquitous quantity in all areas of physics. Just like matter, radiation carries angular momentum. It can be decomposed in two parts, namely the spin angular momentum (SAM) and the orbital angular momentum (OAM). Each one of these components has very specific properties and lead to numerous applications using visible and infrared light. In this thesis, we study the behavior of these two types of light angular momentum in a very non-linear process called high harmonic generation (HHG). In this physical process known since 1987, an intense infrared laser is focused into an atomic or molecular gas jet, which in the right intensity regime allows to generate a radiation which has a short wavelength (extreme ultraviolet domain) and is extremely brief (attosecond, 1 as = 10⁻¹⁸ s).We begin by describing theoretically this process, as well as defining in depth the notion of light angular momentum. We then study HHG from an infrared laser carrying OAM. This allows to obtain an unique light source, generating ultrashort light pulses of controlled orbital angular momentum with a wavelength of the order of 10 nm. We then study GHOE from beams carrying MAS. Using a resonance from the generation gas, we manage to transfer this angular momentum to the emitted extreme ultraviolet radiation. This radiation is finally used to measure photoionisation circular dichroisms in chiral molecules, measurements previously restricted to synchrotron sources. This paves the way towards chiroptic time resolved measurement on a femto/attosecond timescale.

La thèse porte sur des études expérimentales de réactions d’ions positifs et négatifs pour lesquelles on cherche à caractériser l’effet des différentes formes d’énergie : excitation des ions parents et/ou énergie de collision sur la réactivité. Deux buts sont poursuivis. Le premier, fondamental, est de comprendre la dynamique réactionnelle des systèmes étudiés. Le deuxième est plus appliqué. Il s’agit de fournir des données pour la modélisation de la chimie des milieux complexes (ionosphères, plasmas…). Les systèmes étudiés concernent la réactivité de cations excités CH₃⁺ avec des hydrocarbures saturés et insaturés (alc-ane, -ènes et -ynes en C1 à C4) pour sonder la réactivité sur des molécules de fonctionnalité et de tailles variées ainsi que la réactivité de l’anion C₃N⁻ avec l’acétylène C₂H₂. Ces systèmes sont d’intérêt pour l’étude de l’ionosphère de Titan. Nous avons étudié la réactivité de ces systèmes sur le dispositif CERISES en fonction de l’énergie de collision et de l’énergie interne des ions parents. Les anions C₃N⁻ sont produits par attachement dissociatif d’électrons sur le précurseur BrC₃N. Les cations CH₃⁺ peuvent être formés par deux méthodes. Au laboratoire, l’impact électronique conduit, sur le méthane CH₄, à la formation de CH₃⁺ peu excité, et sur le chlorométhane CH₃Cl, à la formation de CH₃⁺ plus excité. Cette observation a permis de préparer les expériences au synchrotron SOLEIL où on utilise la photoionisation des radicaux CH₃ produits par la pyrolyse du nitrométhane CH₃NO₂ pour former les ions CH₃⁺ et contrôler leur excitation. La variation de l’énergie de photon entre 9.8 et 15 eV a permis de faire varier la distribution d’énergie vibrationnelle ou électronique des ions CH₃⁺. Le développement d’un détecteur de photoélectrons adapté à la source de radicaux a permis la réalisation d’expériences TPEPICO (Threshold PhotoElectron PhotoIon Coincidence) où les ions sont extraits de la source en coïncidence avec des électrons de seuil permettant ainsi un contrôle complet de leur énergie. Nous avons observé que l’énergie interne de CH₃⁺ peut jouer un rôle important sur sa réactivité en ouvrant certaines voies de réaction comme la dissociation séquentielle de certains produits (réactions avec le méthane, le propène…) ou bien la voie de transfert de charge endothermique (réactions avec le méthane, l’éthène) que l’énergie de collision ne favorise pas efficacement. L’observation de l’évolution de la section efficace de formation des produits en fonction des deux types d’énergie nous a également permis de discuter les mécanismes de formation de certains produits, comme ceux passant par la décomposition d’un complexe ou par des transferts plus directs. On a pu montrer que la réaction de C₃N⁻ + C₂H₂ produisait des ions C₂H⁻, CN⁻ et C₅N⁻ en faibles quantités et seulement au-dessus de seuils en énergie de collision qui excluent leur formation dans des atmosphères très froides comme celle de Titan, sauf s’il existe des processus formant les anions C₃N⁻ avec de l’énergie. / This PhD project is focused on the experimental study of reactions of positive and negative ions for which we want to characterize the effect of different energies: internal energy of parents ions and/or collisional energy on the reactivity. There are two main goals. The first is to understand the reaction dynamics of the studied systems. The second one is to obtain data for modelisation of the chemistry in complex areas (ionosphere, plasmas...). Studied systems will concern the reactivity of excited cations CH₃⁺ with saturated and unsaturated hydrocarbons (alcane, alcene and alcyne from C1 to C4) as well as the reactivity of the C₃N⁻ anion with acetylene C₂H₂. Targets are chosen for theirs different chemical functions and interesting size for theoretical studies of Titan. We have studied the reactivity of these systems on the CERISES setup as a function of internal and collisional energies of the parent ions. C₃N⁻ anions are produced by dissociative electron attachment on BrC₃N. CH₃⁺ cations can be produced by two different methods. At the LCP, electronic impact on methane CH₄ produce CH₃⁺ cations with low internal energy whereas electronic impact on chloromethane CH₃Cl produce CH₃⁺ cations with more internal energy. This observation allowed us to prepare for the experiments at the SOLEIL synchrotron where CH₃⁺ cations are produced with controlled internal energy by photoionisation of CH₃ radicals produced in-situ by pyrolysis of nitromethane CH₃NO₂. Tuning of the photon energy between 9.8 and 15 eV allowed us to change the vibrational or electronic energy distribution of the CH₃⁺ cations. The development of a photoelectron detector fitted to the radical source enabled TPEPICO experiments (Threshold PhotoElectron PhotoIon Coincidence) where ions are extracted from the source in coincidence with threshold electrons which allow a total control of their energy.We saw that the internal energy of CH₃⁺ can have an important role on its reactivity by opening paths of reaction like sequential dissociation of products (seen in reactions with methane, propene…) or endothermic charge transfer (with methane and ethene) which is not efficiently enhanced by collisional energy. From the evolution of the absolute reaction cross section with the two different energies we discussed the mechanisms of formation of the observed products (decomposition of a complex or direct transfer). The reaction C₃N⁻ + C₂H₂ produce C₂H⁻, CN⁻ and C₅N⁻ anions in small quantities and only above collisional energy threshold which exclude their formation in cold atmosphere like Titan’s one unless there is processes leading to the production of C₃N⁻ with energy.

abstract: Quiescin Sulfhydryl Oxidase 1 (QSOX1) generates disulfide bonds in its client substrates via oxidation of free thiols. Localized to the Golgi and secreted, QSOX1 helps to fold proteins into their active form. Early work with QSOX1 in cancer began with the identification of a peptide from the long form of QSOX1 in plasma from patients with pancreatic ductal adenocarcinoma. Subsequent work confirmed the overexpression of QSOX1 in numerous cancers in addition to pancreatic, including those originating in the breast, lung, brain, and kidney. For my work, I decided to answer the question, “How does inhibition of QSOX1 effect the cancer phenotype?” To answer this I sought to fulfill the following goals A) determine the overexpression parameters of QSOX1 in cancer, B) identify QSOX1 small molecule inhibitors and their effect on the cancer phenotype, and C) determine potential biological effects of QSOX1 in cancer. Antibodies raised against rQSOX1 or a peptide from QSOX1-L were used to probe cancer cells of various origins for QSOX1 expression. High-throughput screening was utilized to identify 3-methoxy-n-[4(1pyrrolidinyl)phenyl]benzamide (SBI-183) as a lead inhibitor of QSOX1 enzymatic activity. Characterization of SBI-183 activity on various tumor cell lines revealed inhibition of viability and invasion in vitro, and inhibition of growth, invasion, and metastasis in vivo, a phenotype that was consistent with QSOX1 shKnockdown cells. Subsequent work identified 3,4,5-trimethoxy-N-[4-(1-pyrrolidinyl)phenyl]benzamide (SPX-009) as an SBI-183 analog with stronger inhibition of QSOX1 enzymatic activity, resulting in a more potent reduction in tumor invasion in vitro. Additional work with QSOX1 shKnockdown and Knockout (KO) cell lines confirmed current literature that QSOX1 is biologically active in modulation of the ECM. These results provide evidence for the master regulatory role of QSOX1 in cancer, making it an attractive chemotherapeutic target. Additionally, the small molecules identified here may prove to be useful probes in further elucidation of QSOX1 tumor biology and biomarker discovery. / Dissertation/Thesis / Doctoral Dissertation Molecular and Cellular Biology 2020