Thesis (Ph. D.)--University of Florida, 2004. / Title from title page of source document. Document formatted into pages; contains 134 pages. Includes vita. Includes bibliographical references.

Thesis (M.S.)--Oregon State University, 2003. / Typescript (photocopy). Includes bibliographical references (leaves 52-62). Also available on the World Wide Web.

Thesis (Ph. D.)--University of Chicago, Dept. of Ecology and Evolution, August 2003. / Includes bibliographical references. Also available on the Internet.

Coral reefs thrive in nutrient-deficient environments yet function among the most productive ecosystems on Earth as a consequence of the symbiosis between coral hosts and their symbiotic zooxanthellae. The symbiotic unit (holobiont) can utilize both inorganic and organic sources of nutrients for the accumulation of carbon and nitrogen required for metabolism, growth, and reproduction. An iterative model was created to describe the flux of carbon and nitrogen between a host and its algae. The model design is based on a previously published conceptual model of algal symbioses; functions and values of input parameters are based on published studies of the coral species Stylophora pistillata. The model is designed to simulate responses of the coral, zooxanthellae and the holobiont to different environmental variables, either one at a time or changing simultaneously. Simulations presented are for default values based on previously published data for S. pistillata adapted to high-light (shallow-euphotic) and low-light (deep-euphotic) environments, and for single-variable manipulations of rates of a) host feeding, b) photosynthesis, and c) dissolved inorganic nitrogen (DIN) uptake. Simulations examining feeding rates between 0% and 6.5% of host biomass indicate that biomass of both high-light and low-light adapted holobionts increase exponentially with increased feeding, with benefit to the high-light holobiont ~8 times greater than to the low-light holobiont. Increasing rates of photosynthesis illustrated that a low-light holobiont is carbon limited, is primarily dependent upon host feeding, and can benefit from a small increase in photosynthesis rate. Simulations examining rates of DIN input indicate that the high-light holobiont functions optimally when inorganic nitrogen input is very low. Increase in DIN up to 0.5% resulted in benefit to the holobiont, but more resulted in unrealistically excessive growth by the zooxanthellae until a function to maintain a fixed range for the host-zooxanthellae biomass ration function was included in the model. Simulations for the low-light holobiont did not indicate any benefit from DIN input. The model was originally designed using a spreadsheet-based program which frequently became overloaded when testing multiple variables. Modification of the model in software better designed for modeling is recommended for future work.

Coastal communities will be most affected by global climate change and are important to study to understand current and future ecological processes. The current model for global climate change predicts a change in rainfall, which will alter the salinity of coastal systems. Given the presence of eutrophication in many coastal waters, it is important to understand the effects that this increase in nutrients, coupled with changes in salinity, will have on these communities. This study was conducted to understand the effect of salinity increase on the growth and herbivory of the black mangrove, Avicennia germinans, in the presence of increased nutrients. Explicitly, the effects of changing salinity (high, medium, and low) were coupled with fertilizer additions of nitrogen, phosphorus, both, or no fertilizer. Nutrient enrichment differentially affected the growth and herbivory of the plants between salinity zones. The medium salinity zone consistently produced the greatest increases in growth and herbivory. Added nutrients did not have an effect on growth in the low salinity zone. However, added nitrogen increased some growth variables in the medium salinity zone and added phosphorus increased some growth variables in the high salinity zone. Phosphorus also increased herbivory. The results point to diverse processes acting along the salinity gradient. There appears to be differential N- and P-limitation along the gradient. Additionally, the growth differences indicate abiotic and biotic limitations across the salinity gradient, with debilitating salinity acting in the high salinity zone and competition acting in the low salinity zone.

Globally agricultural production is facing serious challenges to provide adequate food supply to meet a growing population. However, the reduced capacity of soil to support and sustain agricultural production as a result of soil fertility decline is impacting negatively on agricultural growth. Increase in the price of inorganic fertilisers and limited availability of nutrients from organic amendments has reduced progress in improving soil fertility. This research therefore aims at contributing knowledge towards evaluating the maximisation/optimisation of nutrients in compost and secondary treated sewage effluent (STSE) amended soils to meet the nutritional requirements of crops for sustainable crop production and environmental protection. STSE was irrigated on soils (sandy loam and clay loam) amended with greenwaste compost in soil incubation, glasshouse/pot and lysimeter studies. Perennial ryegrass (Lolium perenne) was grown in the pots and lysimeter studies. The incubation experiment showed that for a clay loam, N mineralisation in treatments with STSE alone and combinations of compost and STSE was higher than the applied N. Increasing compost quantity in compost and STSE nutrient integration resulted in reduced net N mineralisation in the clay loam soil. In the sandy loam, increasing compost contribution in compost and STSE nutrient integration resulted in an increase in net N mineralisation. Cation exchange capacity, microbial diversity, quality of available carbon and drying and rewetting cycles influenced the net nitrogen mineralisation dynamics in both soil types. Increasing the contribution of STSE while reducing compost quantity resulted in increased nitrogen use efficiency and ryegrass dry matter yield. The environmental threat to ground and surface water pollution through NO3 --N leaching may be enhanced by the inclusion of STSE in integrated compost and STSE nutrient supply to plants. Similarly, the threat to eutrophication due to phosphorous leaching is likely to be higher with integration of compost and STSE. Ryegrass dry matter yield reduced with increasing compost contribution while the concentration of N in ryegrass herbage for the combinations of compost and STSE was above the minimum requirement for N in herbage for productive grazing and dairy cattle in the pot experiment. Using compost and STSE of similar characteristics, the ideal approach to maximise nutrient potential from compost through irrigation with STSE is when 25% compost is integrated with 75% STSE with respect to nitrogen supply.

In den meisten Ländern Mitteleuropas gilt weniger als ein Prozent des verbleibenden Laubwaldes als ungestört und temperierte Wälder sind Herausforderungen wie Arteninvasion, Klimawandel und steigender Stickstoff(N)-Deposition ausgesetzt. In der Vergangenheit wurde gezeigt, dass hohe N-Einträge N-Limitierungen verringern, Phosphor(P)aufnahme behindern und P-Mängel in der Buche auslösen können. Die Artendiversität von Bäumen kann die Bestandsproduktivität durch die Prozesse Komplementarität und Facilitation (Wachstumserleichterung) erhöhen, wenn diese einen wachstumslimitierenden Nährstoff betreffen. Ein Schlüsselprozess im Nährstoffkreislauf ist der Weg von Nährstoffen durch die mikrobielle Biomasse während der Dekomposition. Es wurde gezeigt, dass die mikrobielle Biomasse um N bspw. mit Buchen und um P mit tropischen Moorpflanzen konkurriert. Die Buche ist eine sehr konkurrenzfähige Baumart in temperierten Waldökosystemen aber kann von der Eiche in trockenen Bereichen übertrumpft werden, während Hainbuche und Linde eine geringere Rolle spielen. Eichen erfahren jedoch in der jüngsten Vergangenheit in europäischen Wäldern einen Rückgang, der womöglich auf hohe N-Einträge zurückzuführen ist. Für diese Arbeit untersuchten wir die Nährstoff-, Konkurrenz- und strukturelle Dynamik eines unbewirtschafteten, sehr naturnahen Laubwaldes in Mitteldeutschland, der aus Buche (Fagus sylvatica), Eiche (Quercus petraea und Quercus robur), Hainbuche (Carpinus betulus) und Linde (Tilia cordata und Tilia platyphyllus) aufgebaut ist. Unsere Ziele waren (1) zu erforschen, ob Komplementarität und/oder Facilitation die Produktivität in diesem Waldökosystem erhöht, (2) festzustellen, ob es Konkurrenz um die Nährstoffe N, P und K zwischen Bäumen und mikrobieller Biomasse gibt und, (3) die Nachbarschaftsdynamik der genannten Baumarten zu untersuchen und herauszufinden, ob der Eichenrückgang mit hoher N-Deposition einhergeht. In Beständen einer Art sowie verschiedenen Mischbeständen aus je drei Arten ermittelten wir Biomasseproduktion und Nährstoffverfügbarkeit. Nährstoffnutzungseffizienzkurven (Nährstoffnutzungseffizienz = Biomasseproduktion pro verfügbare Nährstoffe) wurden genutzt um festzustellen, ob ein bestimmter Nährstoff das Baumwachstum limitiert. Die jährliche Netto-Nährstoffveränderung wurde in einer Laubbeutel-Studie als Differenz zwischen ursprünglichem und verbleibendem Nährstoffgehalt des sich zersetzenden Laubfalls nach einem Jahr kalkuliert. Die Nährstoffresorptionseffizienz berechneten wir über die Ermittlung der N-, P- und Kalium(K)-Konzentrationen in sonnenexponierten Blättern und im gefallenen Laub. Die Nachbarschaftsdynamik von Bäumen wurde über die Durchmesserverteilung, überirdische Holzbiomasse für jede Artenkombination sowie eine Polygon-Abschätzung von Wachstumsräumen erforscht. Zusätzlich wurde eine durchmesserbasierte nearest neighbor(nächster-Nachbar)-Analyse für Baumpaare durchgeführt. Ein Geographisches Informationssystem (GIS) wurde genutzt um Wachstumsraum-Polygone zu erstellen und nächste Nachbarn zu bestimmen. Auf Einzelbaum-Level, ermittelt durch einen Nachbarschaftsansatz, waren relative Wachstumsraten von Buchen im Einzelbestand geringer als in der Mischung mit Linde und Hainbuche während das Wachstum von Linde im Einzelbestand größer war als in Mischung mit Buche und Eiche. Die Nährstoffnutzungseffizienzkurve für Buche zeigte optimale P- und K-Nutzungseffizienz für die Art in Mischbeständen, während sie in Einzelbeständen  P- und K-limitiert war. Während die jährliche Netto-Nährstoffveränderung in sich zersetzendem Blattlaub die Verfügbarkeit von P und K im Boden beeinflusste, war dies für N nicht der Fall. Resorptionseffizienzen von N, P und K hingen negativ mit der jährlichen Netto-Nährstoffveränderung zusammen. In unserer Studie zur Nachbarschaftsdynamik von Bäumen fanden wir heraus, dass intraspezifische nearest neighbors gleiche Durchmesser aufwiesen und ihren Durchmesser gleichzeitig mit dem des Nachbarn vergrößerten. Im Gegensatz dazu waren die Durchmesser von interspezifischen nearest neighbors im Allgemeinen unterschiedlich und der Durchmesser des Nachbarn verringerte sich mit zunehmendem Durchmesser des Zielbaums. Eichen konnten ihren Wachstumsraum mit zunehmendem Durchmesser nicht vergrößern, aber dominierten ihre nearest neighbor über die Größe. Unsere Ergebnisse zeigten, dass im untersuchten Waldökosystem Nährstofflimitierungen artabhängig waren und dass die Nutzung von Nährstoffnutzungseffizienz und Nachbarschaftsansatz geeignete Mittel sind, den Einfluss einzelner Baumarten auf die Produktivität einer Art im Rein- und Mischbestand zu ermitteln – so wie die beobachtete Facilitation der Buche im Mischbestand. Diese Werkzeuge stellen eine wichtige Basis zur verbesserten Bewirtschaftung typischer temperierter Mischwälder dar. Wir schlussfolgerten weiterhin, dass Konkurrenz zwischen mikrobieller Biomasse und Bäumen für P und K hoch, aber für N weniger bedeutend war, was wahrscheinlich in hoher N-Deposition in diesem Waldökosystem begründet liegt, welche den internen N-Kreislauf entkoppelte. Die hohe N-Deposition trug wahrscheinlich auch zu geringer Verjüngung der Eiche bei, während ältere Eichen in unserem Untersuchungsgebiet im Wettbewerb um Licht erfolgreich waren. Die Bestandsstruktur war charakterisiert durch stärkere interspezifische verglichen mit intraspezifischer Konkurrenz. Daraus resultierend bildeten Reinbestände aus Buche, Eiche und Linde Klimaxbestände hoher Biomasse innerhalb eines sich verändernden, kleinskaligen Mosaiks verschiedener Artenzusammensetzungen. In Reaktion auf neue Bewirtschaftungsanforderungen des Globalen Wandels sind weiterführende Forschungen zu Nutzungseffizienz unterschiedlicher Ressourcen für Baumarten in verschiedenen Zusammensetzungen empfehlenswert.

Immune protection wanes during aging. This is evidenced by increased morbidity and mortality from infectious disease in aged individuals. As the aging population continues to increase worldwide, it will become increasingly important to determine both causes and therapeutic strategies for defects in the aged immune response. In particular, CD8 T cells have been shown to be highly susceptible to age-related defects. Recently, metabolic pathways have been implicated as critical factors in T cell fate decisions during immune responses. Of note, metabolic pathways are also considered primary determinants of lifespan in mammals. Therefore, we hypothesized that metabolic manipulations to extend lifespan would have significant effects on the aging immune system and protection during infection. In particular, we investigated the impact of rapamycin (rapa), both acute and chronic treatment regimens, on adult and old mice. Specifically, we tested how T cell development, peripheral homeostasis, and effector immunity became altered during treatment. We made side-by-side comparisons in calorically restricted (CR) old mice as a gold standard model of longevity extension. Importantly, both of these interventions have been reported to benefit immune function and extend lifespan in mice. However, our data strongly indicate that both rapa and CR induce distinct but deleterious consequences to overall immunity in mice. We conclude that neither rapa nor CR may be ideal candidates for extending lifespan in humans.

Domestic wastewater is the most abundant type of wastewater. Direct discharge of untreated domestic wastewater has environmental and public health risks due to the presence of organics, nutrients and pathogens. Application of anaerobic processes for the treatment of domestic sewage, which at present is largely treated by aerobic processes, has drawn considerable attention recently. Anaerobic processes can be applied for the removal of organic matter (methanogenesis) and nitrogen (anaerobic ammonium oxidation (Anammox)).The toxicity of fluoride to methanogenesis was investigated. The results indicate that acetoclastic were more susceptible to fluoride than hydrogenotrophic methanogens. The concentration of fluoride causing 50% inhibition (IC50) to acetoclastic ranged from 18.1 to 155.7 mg L-1 while for hydrogenotrophic methanogens was > 400.0 mg L-1.The feasibility of a combined system consisting of anaerobic up-flow anaerobic sludge blanket (UASB) followed by aerobic activated sludge (AS) reactor for removal of carbonaceous and nitrogenous contaminants from strong synthetic sewage (2.5 g chemical oxygen demand (COD) L-1) was also studied. The average combined removal of total COD, volatile fatty acids (VFA) and protein was higher than 89.0%, 99.0% and 97.0%; respectively. Extensive nitrification (96.0%) was observed when dissolved oxygen (DO) concentration was > 2.0 mg L-1. In contrast, only partial nitrification occurred when the AS received high organic loads and/or the DO level was below 2.0 mg L-1.The inhibitory effect of nitrite and nitrate on methanogenesis was evaluated. Methanogenic activity was inhibited by the presence of NOx- compounds (i.e., nitrite and nitrate). The inhibition imparted by nitrate was not due to the nitrate itself, but rather to its reduced intermediate, nitrite. The toxicity of NOx- to methanogens was found to be reversible after all the NOx- were reduced during denitrification.Moreover, the development of Anammox enrichment cultures was evaluated. Anammox cultures were successfully developed using sludge samples collected from municipal wastewater treatment plants (WWTPs) as inocula but not from methanogenic granular sludges. Return activated sludge (RAS) collected from WWTP operating for biological nitrogen removal had the highest intrinsic level of Anammox activity. RAS Anammox culture was developed rapidly within 40 days with a doubling time of 6.8 days.

In this literature review the characteristics of two free-floating macrophytes, water hyacinth   (Eichhornia crassipes) and duckweed (Lemna sp.), and two microalgae, Chlorella and Scenedesmus, have been examined regarding their suitability as efficient nutrient removers in the treatment of wastewater with high levels of nutrients and suspended solids from a biogas plant in Loudden. The needs required for the plants to be able to grow in wastewater and the amounts of biomass they can produce have also been studied. The results show that Chlorella is capable of a very high uptake of nutrients in photobioreactors with high nutrient loadings. With an ammonia uptake maximum value at 10900mg/m2/d Chlorella outshines the other organisms in this study. The test organism that performed the closest to Chlorella in terms of nitrogen uptake was water hyacinth with an uptake about 1602mg/m2/d. One factor affecting nutrient uptake in a positive way is the growth rate. Free-floating macrophytes produce more biomass than algae do, and water hyacinth have been shown to be the most productive. It is important to conduct a regular harvest of the plants if a high production should be maintained. High quantity of biomass per unit area can inhibit the growth, and algae are more sensitive to this than the macrophytes often suffering from self-shading when the density is too high. The high level of nutrients in the wastewater prevents growth and dilution is required to achieve any growth at all. Therefore, conventional treatment methods might prove to be a better option.