Paratuberculosis (PTB) is a contagious and chronic enteric disease of ruminants and many non-ruminants caused by Mycobacterium avium subsp. paratuberculosis (MAP), and is characterised by diarrhoea and progressive emaciation with consequent serious economic losses due to death, early culling, and reduced productivity. In addition, indirect economic losses may arise from trade restrictions. Besides being a production limiting disease, PTB is a potential zoonosis; MAP has been isolated from Crohn’s disease patients and was associated with other human diseases, such as rheumatoid arthritis, Hashimoto’s thyroiditis, Type 1 diabetes, and multiple sclerosis. Paratuberculosis in sheep and goats may be globally distributed though information on the prevalence and economic impact in many developing countries seem to be scanty. Goats are more susceptible to infection than sheep and both species are likely to develop the clinical disease. Ingestion of feed and water contaminated with faeces of MAP-positive animals is the common route of infection, which then spreads horizontally and vertically. In African countries, PTB has been described as a “neglected disease”, and in small ruminants, which support the livelihood of people in rural areas and poor communities, the disease was rarely reported. Prevention and control of small ruminants’ PTB is difficult because diagnostic assays demonstrate poor sensitivity early in the disease process, in addition to the difficulties in identifying subclinically infected animals. Further studies are needed to provide more insight on molecular epidemiology, transmission, and impact on other animals or humans, socio-economic aspects, prevention and control of small ruminant PTB.

Rheumatoid Arthritis (RA) is an autoimmune disorder that results in inflamed joints and osteoporosis. Previous studies have shown that Mycobacterium avium subspecies Paratuberculosis (MAP) has a role in the downregulation of active osteocalcin in Crohn’s disease (CD). Since RA and CD have a similar pathology, we hypothesize that active inflammation following MAP infection will result in downregulation of active osteocalcin in RA patients. In this study, a total of 82 individuals (48 RA and 34 healthy) were examined for MAP status and for active osteocalcin. Out of the 48 RA patients, 18 were MAP positive compared to only 1 out of 34 healthy control (P-values < 0.05). Overall, active osteocalcin levels between RA (2.70 ± 0.87 ng/mL) were significantly lower than healthy controls (5.84 ± 1.42 ng/mL, P-values < 0.05). MAP positive RA patients active osteocalcin levels were lower (0.60 ± 0.31 ng/mL) than MAP negative RA patients (3.85 ± 1.31 ng/mL). The active osteocalcin level in healthy MAP positive controls were lower (1.65 ng/mL) than healthy MAP negative controls (5.96 ± 1.45 ng/mL). The level of active osteocalcin in all MAP positive patients was significantly lower (0.66 ± 0.29 ng/mL) than all MAP negative patients (4.95 ± 0.98 ng/mL, P-values < 0.05). The correlation between presence of MAP in RA individuals and downregulation of active osteocalcin supports a role of MAP as a pathogenic element in RA. In addition, we tested three Single Nucleotide Polymorphisms (SNPs) in TNFα, TNFRSF1A and TNFRSF1B by TaqMan genotyping from peripheral blood samples of the 82 subjects. These SNPs were used to determine whether they influence the levels of osteocalcin in RA and healthy patients. Patients with the SNP TNFRSF1B:rs3397 who had TT genotype had a significantly lower osteocalcin level compared with patients without SNP who had CC genotype (0.98 ± 0.35 ng/mL vs. 1.86 ± 0.61 ng/mL). Overall, there was a correlation of the presence of these SNPs and the downregulation of osteocalcin in RA.

No description available.

Brucella abortus (BA) are gram-negative, facultative intracellular bacteria that cause abortions in cattle and debilitating illness in humans. The US is now virtually free of bovine brucellosis, but the disease is endemic in wildlife. The official brucellosis vaccine in the US is strain RB51 (RB51). It elicits protective cell-mediated immunity (CMI) against BA infections. Mycobacterium avium subspecies paratuberculosis (MAP) causes paratuberculosis in ruminants. It is a slow growing intracellular parasite that requires CMI for its control, belongs to the genus Mycobacterium, and is closely related to M. avium avium (MA). Using RB51 as a vector that induces strong protective CMI may be useful to protect against MAP if it expresses MAP protective antigens. Therefore, MAP 85A and 35kDa proteins were expressed at low levels in RB51, and the immune responses elicited by these vaccines in BALB/c mice were evaluated. Strong anti-Brucella immunity was generated, but the anti-mycobacterial response was low. To evaluate protective efficacy, a BALB/c model using MA was developed. When mice were challenged with MA, protection was obtained in some experiments but was inconsistent. This may be due to the low expression of MAP antigens in RB51. Another objective was to evaluate the effect of an ongoing Brucella-infection on the efficacy of RB51 vaccination, and whether vaccination of already infected animals could have a curative effect. Mice acutely or chronically infected with virulent BA, rapidly cleared the RB51 vaccine organisms, but there was no significant decrease in the number of virulent BA. Brucella spp. have been developed as biological weapons, but there are no vaccines to protect humans. The development of a very attenuated protective vaccine is necessary to prevent human infections, as well as to protect wildlife. To generate such a vaccine, RB51 based vaccines were irradiated to render them non-replicative, but metabolically active. We demonstrated that in general, irradiated and non-irradiated RB51 vaccines remain protective at levels similar to those elicited by the live vaccines. Therefore, irradiation of strain RB51 is an effective means of attenuating the strain without affecting its protective characteristics, and could eventually be used as a vaccine for wildlife and humans. / Ph. D.

No description available.

Mycobacterium avium ssp. paratuberculosis (MAP) est l'agent causal de la paratuberculose, maladie entérique, chronique et incurable des ruminants, avec un impact économique important. Une meilleure compréhension des facteurs de risque associés à l'introduction de la maladie dans un troupeau est essentielle pour sa prévention. L’amélioration des tests diagnostiques est aussi importante pour son contrôle. L’introduction des nouveaux animaux dans le troupeau et la présence et contact des différentes espèces sauvages et domestiques avec les vaches, semblent être des facteurs de risques d’introduction de la maladie. Nous avons réalisé une revue systématique dont l`objective était de recueillir l’information pertinente pour répondre à la question sur l’importance de ces facteurs et leur impact sur l’introduction de la maladie dans un troupeau. D`un autre côté, la détection de MAP dans les fèces par culture bactérienne demeure la méthode diagnostique de choix malgré les facteurs qui l`affectent. Une série de 3 étapes est requise afin de confirmer la présence du MAP : (1) culture (2) coloration, et (3) confirmation du MAP par PCR (si détecté à l´étape 2). Certains échantillons fécaux présentent une particularité en raison de leur forte charge de micro-organismes. Ces contaminants peuvent interférer avec la croissance et la détection de MAP. Une étude visant à : a) estimer l'impact des certain covariables sur les résultats de la culture de MAP parmi l`analyse rétrospective d`un banque des données et b) évaluer la possibilité d'optimiser le processus de diagnostic du MAP en effectuant l'analyse PCR sur les cultures déclarées comme contaminées a été réalisée. / Mycobacterium avium ssp. paratuberculosis (MAP) is the causative agent of paratuberculosis an enteric, chronic and incurable disease of ruminants, with a major economic impact. A better understanding of the risk factors associated with the introduction of the disease in a herd, is essential for its prevention. Improving diagnostic tests are also important for the control. The introduction of new animals into the herd and the presence and contact of wild and domestic species with cattle, appear to be a risk factor for disease introduction. We conducted a systematic review to obtain relevant information to answer the question about the importance and impact of these factors on the introduction of the disease into a herd. On the other hand, the detection of MAP in feces by bacterial culture remains the diagnostic method of choice despite of the factors that can affect it. A series of 3 steps are required to confirm the presence of MAP: (1) culture (2) acid fast stain (3) MAP confirmation by PCR (if detected in step 2). Some fecal samples exhibit a particularity due to their normal heavy load of micro-organisms. These contaminants can interfere with the growth and detection of MAP. A study to: a) assess the impact of some covariables on the culture results by a retrospective analysis of a databank and b) to evaluate the possibility to optimize MAP diagnostic process by performing a PCR analysis on cultures declared as contaminated was realized.

La paratuberculosis (PTB) est une maladie endémique des ruminants causée par Mycobacterium avium subsp. paratuberculosis (Map). Les stratégies de maîtrise actuelles ne sont pas suffisamment efficaces. La réponse à l'exposition à Map varie entre les animaux avec une part de déterminisme génétique. Des marqueurs génétiques pourraient permettre une sélection. L'objectif était d'évaluer par modélisation l'efficacité potentielle attendue de stratégies de maîtrise utilisant la sélection génétique ou la réduction de l'exposition en élevage. Nous avons identifié quatre traits phénotypiques de résistance influençant principalement la propagation de Map à l'échelle du troupeau et montré la valeur ajoutée de leur amélioration simultanée. Nous avons évalué l'effet de l'environnement du troupeau et du système d’élevage sur la propagation et la maîtrise de Map. Nous avons montré une différence d’efficacité des stratégies de maîtrise les plus pertinentes entre deux systèmes d'élevage bovins laitiers contrastés d'Europe: l'ouest de la France et l'Irlande. Nous avons évalué l'efficacité que pourrait apporter la sélection génomique en évaluant le temps nécessaire pour atteindre des niveaux de variation des traits sélectionnés permettant un bon contrôle de l‘infection sous l’hypothèse que des marqueurs de sélection soient disponibles. Nous avons identifié 2 paramètres du modèle de sélection génomique influents sur l’efficacité de la sélection. Notre modèle permet d’intégrer de nouvelles connaissances biologiques sur le déterminisme génétique de la résistance à Map pour évaluer des stratégies de maîtrise complexes comprenant une composante de sélection génomique. / Paratuberculosis (PTB) is an endemic disease of ruminants caused by Mycobacterium avium subsp. paratuberculosis (Map). Current control strategies are not effective enough. The response to Map exposure varies between animals with evidence of a partial genetic determinism. Genetic markers could allow selection. The objective was to assess the potential expected effectiveness of control strategies relying on genetic selection or reduction of exposure in herds, using a modelling approach. We identified four phenotypic traits of resistance mainly influencing the spread of Map at the herd scale and showed the added value of their simultaneous improvement. We evaluated the effect of the herd environment and management on the spread and control of Map. We showed a difference in effectiveness of the most relevant control strategies between two contrasting dairy cattle systems in Europe: western France and Ireland. We evaluated the effectiveness of genomic selection by assessing the time required to reach levels of variation in the selected traits allowing to achieve a good control of infection, assuming that associated genomic markers could be available. Effectiveness of selection was mainly influenced by 2 of the parameters of the developed genomic selection model. Our model allows to account for future knowledge about the genetic determinism of cattle resistance to Map in order to assess the effectiveness of complex control strategies including a genomic selection component.

The goal of this project was to incorporate bacteriophage with Bioluminescent Assay in Real-Time Loop-mediated isothermal amplification (BART-LAMP) for the rapid detection of Mycobacterium avium subspecies paratuberculosis (MAP). As the causative agent of Johne’s Disease, there are no rapid detection methods that are suitable in specificity and sensitivity. A screening assay for phage isolation was developed, and over 400 samples were screened for the isolation of a bacteriophage against MAP. One novel Mycobacterium phage was isolated and characterized using transmission electron miscroscopy, host range studies, restriction enzyme digestion, and pH and temperature stability. It was sequenced, annotated, and underwent an in silico protein analysis. No pathogenic or lysogenic genes were detected, and it was found to be related to Gordonia phage GTE2. BART-LAMP was applied to the detection of the isolated phage using purely extracted DNA and crude phage lysate, showing that phages could be detected successfully. / Beef Cattle Research Council; Agriculture and AgriFood Canada through Growing Forward initiative

Mycobacterium avium ssp. paratuberculosis (MAP) est l'agent causal de la paratuberculose, maladie entérique, chronique et incurable des ruminants, avec un impact économique important. Une meilleure compréhension des facteurs de risque associés à l'introduction de la maladie dans un troupeau est essentielle pour sa prévention. L’amélioration des tests diagnostiques est aussi importante pour son contrôle. L’introduction des nouveaux animaux dans le troupeau et la présence et contact des différentes espèces sauvages et domestiques avec les vaches, semblent être des facteurs de risques d’introduction de la maladie. Nous avons réalisé une revue systématique dont l`objective était de recueillir l’information pertinente pour répondre à la question sur l’importance de ces facteurs et leur impact sur l’introduction de la maladie dans un troupeau. D`un autre côté, la détection de MAP dans les fèces par culture bactérienne demeure la méthode diagnostique de choix malgré les facteurs qui l`affectent. Une série de 3 étapes est requise afin de confirmer la présence du MAP : (1) culture (2) coloration, et (3) confirmation du MAP par PCR (si détecté à l´étape 2). Certains échantillons fécaux présentent une particularité en raison de leur forte charge de micro-organismes. Ces contaminants peuvent interférer avec la croissance et la détection de MAP. Une étude visant à : a) estimer l'impact des certain covariables sur les résultats de la culture de MAP parmi l`analyse rétrospective d`un banque des données et b) évaluer la possibilité d'optimiser le processus de diagnostic du MAP en effectuant l'analyse PCR sur les cultures déclarées comme contaminées a été réalisée. / Mycobacterium avium ssp. paratuberculosis (MAP) is the causative agent of paratuberculosis an enteric, chronic and incurable disease of ruminants, with a major economic impact. A better understanding of the risk factors associated with the introduction of the disease in a herd, is essential for its prevention. Improving diagnostic tests are also important for the control. The introduction of new animals into the herd and the presence and contact of wild and domestic species with cattle, appear to be a risk factor for disease introduction. We conducted a systematic review to obtain relevant information to answer the question about the importance and impact of these factors on the introduction of the disease into a herd. On the other hand, the detection of MAP in feces by bacterial culture remains the diagnostic method of choice despite of the factors that can affect it. A series of 3 steps are required to confirm the presence of MAP: (1) culture (2) acid fast stain (3) MAP confirmation by PCR (if detected in step 2). Some fecal samples exhibit a particularity due to their normal heavy load of micro-organisms. These contaminants can interfere with the growth and detection of MAP. A study to: a) assess the impact of some covariables on the culture results by a retrospective analysis of a databank and b) to evaluate the possibility to optimize MAP diagnostic process by performing a PCR analysis on cultures declared as contaminated was realized.

No description available.