Great Basin bristlecone pine (Pinus longaeva D.K. Bailey) is a keystone species of the subalpine forest in the Great Basin and western Colorado Plateau ecoregions in Utah, Nevada, and California. Bristlecone pine is also the world's longest-lived non-clonal organism, with individuals occasionally reaching ages up to 5,000 years old. Because of its longevity, bristlecone pine contains an important proxy record of climate data in its growth rings. Despite its ecological and scientific importance, bristlecone pine's distribution and associated environmental drivers are poorly understood. Geospatial technologies, including unmanned aircraft systems (UAS), remote sensing, geographic information systems (GIS), and spatial modeling techniques can be used to quantify and characterize biotic and abiotic factors that constrain the fundamental and realized niches of bristlecone pine and other subalpine forest species. In Chapter 1, we describe workflows and important technical and logistical considerations for collecting aerial imagery in mountainous areas using small UAS, enabling high-quality remotely sensed datasets to be assembled to study the ecology of subalpine forests. In Chapter 2, we discuss a unique outlier population of bristlecone pine found in the Stansbury Mountains, Utah. We used GIS to delineate boundaries for five small stands of bristlecone pine and examined two competing hypotheses that could explain the species' presence in the range: 1) that the current population is a relict from the Pleistocene, or 2) that long-distance dispersal mechanisms led to bristlecone pine's migration from other mountain ranges during or after the warming period of the Pleistocene/Holocene transition. Potential migration routes and barriers to migration were considered in our effort to understand the dynamics behind the presence of this unique disjunct population of bristlecone pine. Chapter 3 describes a comprehensive mapping effort for bristlecone pine across its entire distribution. Using data from historic maps, vegetation surveys, herbarium records, and an online ecological database, we compiled nearly 500 individual map polygons in a public-facing online GIS database representing locations where bristlecone pine occurs. Using these occurrence data, we modeled the suitable habitat of the species with Maximum Entropy (MaxEnt), examining the relative importance of 60 environmental variables in constraining the species distribution. A probability map was generated for bristlecone pine, and the environmental variables were ranked in order of their predictive power in explaining the species distribution. We found that January mean dewpoint temperature and February precipitation explained over 80% of the species distribution according to the MaxEnt model, suggesting that the species favors drier air conditions and increased snowfall during winter months. These three studies demonstrate that geospatial tools can be effectively used to quantify and characterize the habitat of bristlecone pine, leading to improved management and conservation of the species in the face of multiple threats, including mountain pine beetle (MPB), white pine blister rust (WPBR), and possible habitat constriction due to climate change.

Åldern på borrprover från tall (Pinus sylvestris) på utvalda hällmarksberg belägna på Åby säteris gamla utmarker studerades enligt en årsringsanalys (korsdatering med pekår, se t.ex. Niklasson, Zackrisson & Östlund 1994) i syfte att undersöka trädsuccessionen i lokal skala. Enligt Fries (1951, 1958), som studerade skogssuccessionen i Sotenäs genom pollenanalyser och historiska källor var hällmarkerna kala fram till mitten av 1800-talet p.g.a. hårt skogsutnyttjande (Fries, 1958, s. 43). Även Lindner (1935) beskriver regionalt hällmarkerna som skogslösa under samma tidsperiod. (Lindner 1935, s. 159-165).Resultaten från borrningarna visar att merparten träd grodde under perioden 1800-1850 med en topp i föryngringen på 1860-talet. En jämförelse mellan tillväxten av de borrade äldre träden och unga tallar från både öppen och sluten skog, visade att de borrade träden troligtvis vuxit i relativt öppna förhållanden, men att hällmarksbergen dock har haft en viss skogsvegetation även innan 1800-talet, vilket indikerar ett avtagande av den tidigare skogsdecimeringen och en␣ökande skogsföryngring på hällmarksutmarkerna kring Åby säteri nästan 100 år tidigare än vad både Fries och Lindner beskriver. Säteriverksamheten kan ligga till stor grund i detta då skog kunde hämtas på annat håll. / Tree core samples from Scots pine (Pinus sylvestris) growing on mountains on the former outfields of Åby manor were analysed according to crossdating of annual rings (e.g. Niklasson, Zackrisson & Östlund 1994) in order to examine the forest succession in a local scale. According to extensive pollen analyses by Fries the rocky outcrops were bare because of the harsh harvesting of the forest until 1850 (Fries, p. 43). Lindner (1935 also described the surrounding rocky outcrops as bare during the same period of time.The results in this studie shows that several trees had germinated before 1800-1850 with a peak of the regeneration in 1860. When comparing the average growth of the analysed older Scot pines and young Scot pines from both open and secluded forests it showed that the analysed older trees had germinated on relative open grounds, with some some forest vegetation, on the outfields before 1800, giving hard evidence of a decreasing misuse of the forest and an increased regeneration on the rocky outcrops of Åby manor almost 100 years earlier than the results according to Fries and Lindner. The manor function could have helped keeping the forest since trees could be collected elsewhere.

Pinus prekesiya Xing, Liu et Zhou sp. nov. was described as a new species on the basis of two well preserved ovulate cones from the upper Miocene of central Yunnan, southwestern China. It is the first fossil record of three dimensionally preserved Pinus ovulate cones from China. Morphological comparisons with 15 previously published Cenozoic cones and seven related extant pine species reveal that the fossil cones are identified as a new species, P. prekesiya sp. nov., which belongs to subsection Pinus of subgenus Pinus. The new species shows a combination of characters of P. kesiya and P. yunnanensis, but has a closer affinity with P. kesiya which occurs in the humid region of Yunnan and therefore suggests a more humid climate in central Yunnan during the late Miocene than today. The general cooling trend during the late Neogene and topographic change due to the dramatic Tibetan uplift might have caused a vicariant origin of P. kesiya and P. yunnanensis from the ancestral P. prekesiya.

The purpose of the study was to increase the understanding of the distribution of pine stem rust (Cronartium pini) in young pine (Pinus sylvestris) forests in the northern parts of Sweden. In addition, this study also investigates how the density of cow-wheat (Melampyrum spp.), altitude and proportion of deciduous trees in a stand affects the relative frequency of pine stem rust. The results showed a difference in the distribution of pine stem rust between investigated regions, with Norrbotten county having the largest occurrence with an average relative frequency of 6,9 % and Västernorrland/Jämtland county having the lowest with an average of 0,5 %. Furthermore, results showed that investigated areas with a high frequency of cow-wheat had the highest frequency of pine stem rust in almost all parts of data. The result is most likely due to cow-wheat being important host plants for pine stem rust. Weak correlations were found between altitude and pine stem rust as well as between proportion of deciduous trees and pine stem rust. The weak correlations indicates that there are more factors affecting the occurrence of pine stem rust. However, in following studies of collected data all investigated factors needs to be compared to determine their importance and how they interact with each other. Additionally, comparing the two variants of pine stem rust are essential to increase the understanding of their differences.

During the climate oscillations of the Pleistocene an ice sheet formed covering Fennoscandia. Traditionally, Scots pine and many other species were believed to have persisted in glacial refugia in the south, only returning to northern latitudes as the ice retreated. Recent studies have demonstrated the existence of glacial refugia in higher latitudes, in fact, cryptic refugia as far north as Lofoten have been suggested. I investigated the potential existence of such a refugium for Scots pine using mtDNA markers Nad 1-B/C, Nad 7-1 and NODE_new_663. Results show an east/west distribution of the mtDNA polymorphisms at Nad 1 and Nad 7 across Fennoscandia, where multi-locus mitotype bb is more common in the east and ba is more common in the west, in accordance with the hypothesis of a glacial refugium in northeast Europe. Further, the bb mitotype was discovered to be more widespread in Fennoscandia than previously documented. No unique mitotype was discovered in northwestern Fennoscandian populations to support the hypothesis of a glacial refugium along the northwest coast of Norway. Genetic diversity was high and even across Fennoscandia and differences in diversity were not significantly correlated with distance between populations, possibly due to high mutation-rates for the NODE_new_663 minisatellite locus or as a result from admixture between multiple glacial refugia in the area. No conclusive evidence regarding the existence of a glacial refugium in Fennoscandia was discovered and needs to be studied further.

This study is part of a larger collaborative effort to determine the overall environmental sustainability of intercropping pine (Pinus taeda L.) and switchgrass (Panicum virgatum L.), both of which are promising feedstock for bioenergy production in the Lower Coastal Plain in North Carolina. We measured soil CO₂ efflux (RS) every six weeks from January 2012 to March 2013 in four-year-old monoculture and intercropped stands of loblolly pine and switchgrass. RS is primarily the result of root respiration (RA) and microbial decomposition of organic matter (RH) releasing CO₂ as a by-product and is an important and large part of the global carbon (C) cycle. Accurate estimates of the two components of total soil respiration (RS) are required as they are functionally different processes and vary greatly spatially and temporally with species composition, temperature, moisture, productivity, and management activities. We quantified RA and RH components of RS by using a root exclusion core technique based on root carbohydrate depletion, which eliminates RA within the cores over time. We determined the relationship between RS, RA and RH measurements and roots collected from the cores. We took fresh soil cores in July 2012 to compare root productivity of loblolly pine and switchgrass in monoculture versus the co-culture. Additionally, CH₄ and N₂O fluxes were monitored quarterly using vented static chambers. Pure switchgrass had significantly higher RS rates (July, August, September), root biomass and root length in the top 0-35 cm relative to switchgrass in the co-culture, while loblolly pine with and without switchgrass had no significant changes in RS and roots. Correlations between RA and roots showed significantly positive correlation of RA to grass root biomass (r = 0.37, p ≤ 0.001), fine (r = 0.26, p ≤ 0.05) and medium root surface area (r = 0.20, p ≤ 0.1). The estimated portions of RS attributed to RA in the intercrop stand were 31% and 22% in the summer and fall, respectively. No significant treatment differences were observed in either CH₄ or N₂O flux. Our study indicates a decrease in switchgrass root productivity in the intercropped stand versus the monoculture stand which could account for differences in the observed RS. / Master of Science

Monterey pine (Pinus radiata), a native tree to California and two Mexican islands, is important both ecologically and economically. Outside native stands, Monterey pines are grown for landscaping in California and on plantations around the world. Pitch canker, a disease caused by the fungus Gibberella circinata Nirenberg & O’Donnell (Fusarium circinatum Nirenberg and O'Donnell) is threatening the survival of Monterey pines. The disease currently affects Monterey pines in many parts of the world including the native stands. No effective chemical or biological control is available but some Monterey pines show resistance to the disease. The purpose of this project was to develop a working protocol for producing genetic clones of the resistant pines through micropropagation. These genetic clones will be used for outplanting in places outside the native stands for ornamental and plantation purposes. This project analyzes the results of ten trials with varied parameters and bases the final protocol on the parameters used in the trial that induces the growth of new shoots. The final protocol developed in this project describes, step-by-step, the media preparation for the initiation, plant material collection, surface sterilization of plant material, plating in media and initiation of shoots on explants. The protocol calls for collecting shoot tips with hardened buds that have not yet elongated, then washing the shoot tips in sterile water with Tween 20 for 15 minutes. The shoots tips are then surface sterilized in a 50% bleach solution for 20 minutes. The explants are broken into disks (to minimize damage to the cells) by inserting the tip of a scalpel and tilting it slightly. The initiation media shown to induce growth consists of ½ strength LePoivre basal salt mixture, 5mg/L benzylaminopurine, 3% sucrose and 0.8% agar and is adjusted to a pH of 5.7, then autoclaved for 20 minutes. The explants are inserted into solidified media and incubated in a growth chamber programmed for 16 hours of light and 8 hours of dark with temperatures of 27ºC and 22ºC and light irradiance of 80µEm-2s-1. After 1 month the protocol calls for transferring the growing shoots to elongation media with full LP basal salts and transferring every month. When the number of desired shoots has been reached the forthcoming protocol for rooting can be followed.

The future resilience of Pinus radiata D. Don (Monterey pine) is dependent upon the development of a silviculture program inclusive of either preventative or management techniques for the potentially fatal pitch canker disease (Fusarium circinatum Nirenberg and O’Donnell [=F.subglutinans (Wollenw. & Reinking) Nelson et al. f. sp. Pini). As an ecologically and commercially valued species, a myriad of factors threaten the genetic resources of the geographically limited natural range. This study evaluated the effectiveness of uneven-aged forest management for regeneration success in the native, pitch canker infected Año Nuevo stand at Swanton Pacific Ranch in Davenport, California. Seedling survival and growth averages were used to evaluate the impact of the variables of gap size (0.20-hectare, 0.10-hectare, and 0.05-hectare), site-preparation treatment (pile and burn, lop and scatter), and parent tree (13 local seed sources). Pitch canker symptoms were quantified to conclude if there is indeed a range of expressed resistance according to parent tree. Statistical models (i.e. ‘mixed effect’) yielded moderately significant differences in odds of survival between site treatments, with pile and burn plots producing higher survival rates (p=0.066). No significant difference in survival was detected between gap-sizes (p=0.936 and 0.803, 0.05- and 0.10-hectare gaps respectively to 0.20-hectare reference). Significant variation was expressed (estimate=0.1219, SE=0.057) between the 13 parent trees, implicating usefulness in predicting seedling survival. ‘Mixed effect’ models only detected a significant effect from gap-size on growth measures: 0.20-hectare gaps yielded height and diameter measures significantly larger than 0.05-hectare gaps (p=0.027 and 0.0081 respectively). Contingency tables detected significant association between gap-size and number of pitch canker branch symptoms. The range of infection rates produced by the 13 parent trees did not prove significant by analysis. Pile and burn site preparation treatment increases the probability of survival for artificially regenerated seedlings and 0.20-hectare gaps yield significantly higher growth averages over 0.05-hectare gaps.

Pinus Contorta was introduced to Sweden as a tree that would grow fast with a promising future, also a promise in increased production. What could not be anticipated was the common Swedish weather conditions, such as snow and wind, would have negative impact on Pinus contorta due to its instability connected to fast-growing trunk and wide crown. Those predictions were hard to estimate since these weather conditions also is common in Canada, where it has its origins. The overall damage caused by snow and wind generates an annual loss of approximately hundred million Swedish crowns (SEK), which has a great impact on the Swedish forestry economy. The awareness of the risks and damages on Pinus contorta makes it possible to both prevent and avoid these to some extent. A more detailed study has been done in the Swedish region Norrbotten, where the level of the damage on Pinus contorta was compared to the Swedish pine. The study included inventory of un-thinned stands and quantified data was collected. The conclusions indicated that the level of damage on Pinus contorta stands was more than twice the damage of the Pinus sylvestris stands. However, since Pinus contorta is relatively new in Sweden, the results regarding the future of the contorta pine are therefore insufficient. Furthermore, it is not possible to predict if the promised increase of production will ever be achieved. To achieved reliable results, further studies are suggested where both loss of profit, compared to the Pinus sylvestris stands, but also the full turnaround time of Pinus contorta are included.

Whitebark pine (Pinus albicaulis Engelmann) is a treeline species in the central Rocky Mountains. Its occupation of high elevations previously protected whitebark pine from long-term mountain pine beetle outbreaks. The mountain pine beetle, however, is currently reaching outbreaks of record magnitude in high-elevation whitebark pine. We used a factorial laboratory experiment to compare mountain pine beetle (Dendroctonus ponderosae Hopkins) life history characteristics between a typical host, lodgepole pine (Pinus contorta Engelmann), and whitebark pine. We tested the effects of natal host and brood host on beetle fecundity, offspring size, and brood sex-ratio. We reared mountain pine beetles from whitebark pine and from lodgepole pine, and infested half of them into their natal host and half into the other host. Fecundity was greater overall in lodgepole pine brood hosts. Among lodgepole brood hosts, beetles from whitebark pine had greater fecundity. Fecundity was also significantly related to phloem thickness, which was greater in lodgepole pine. Offspring were larger from whitebark brood hosts than from lodgepole, regardless of their parents’ natal host. Finally, sex-ratio was closer to 1:1 in lodgepole than in whitebark brood hosts. We conclude that host species affects life history of mountain pine beetle with consequences for individual beetle fitness.