141 |
Βιοσυστηματική μελέτη ειδών του γένους Bellevalia Lapeyr (Hyacinthaceae) / A biosystematic study of Bellevalia taxa (Hyacinthaceae)Μπαρέκα, Ελευθερία-Περδίκω 22 October 2008 (has links)
Το γένος Bellevalia, (οικογ. Hyacinthaceae), αποτελείται από βολβώδη taxa, τα οποία παρουσιάζουν ιδιαίτερο ταξινομικό και κυτταρολογικό ενδιαφέρον. Στην Ελλάδα, οκτώ taxa του γένους έχουν καταγραφεί μέχρι σήμερα. Τρία από αυτά, η Bellevalia hyacinthoides, η B. brevipedicellata και η B. sitiaca είναι ενδημικά, ενώ τέσσερα, η B. dubia subsp. boissieri, η B. trifoliata, η B. romana και η B. ciliata είναι μεσογειακά στοιχεία. Επιπλέον, η B. edirnensis, γνωστή από την Ευρωπαϊκή Τουρκία ως ένα στενότοπο ενδημικό, βρέθηκε στην περιοχή του Έβρου στα πλαίσια της παρούσας μελέτης, προσθέτοντας ένα ακόμα είδος στην ελληνική χλωρίδα. Εκτός των ανωτέρω ειδών που απαντούν στον Ελλαδικό χώρο, μελετήθηκαν επιπλέον και τρία είδη της ανατολικής Μεσογείου, τα B. nivalis, B. flexuosa και B. longistyla. Πραγματοποιήθηκε ταξινομική μελέτη, χρήση της κλασσικής τεχνικής χρώσης των χρωμοσωμάτων για τον προσδιορισμό του χρωμοσωματικού αριθμού και των επιπέδων πολυπλοειδίας και στατιστική επεξεργασία των κυτταρολογικών δεδομένων, τόσο των taxa που απαντώνται στην Ελλάδα, όσο και ειδών της Ανατολικής Μεσογείου. Παράλληλα, έγινε για πρώτη φορά στο γένος Bellevalia μελέτη του γονιδιώματος με την χρήση Κυτταρογενετικής (χρώση με φθορισμό για τον εντοπισμό πλούσιων σε CG και ΑΤ ζωνώσεων), και Μοριακής Κυτταρογενετικής (in situ υβριδοποίηση φθορισμού –FISH– σε ριβοσωματικά γονίδια), καθώς και προσδιορισμού της ποσότητας του γενετικού υλικού με κυτταρομετρία ροής. Τα αποτελέσματα αυτής της προσπάθειας απαντούν σε σημαντικά ερωτήματα, σχετικά με την ταξινόμηση και φυλογένεση του γένους, τον προσδιορισμό του γενετικού υλικού, την οργάνωση του γονιδιώματος, το είδος και την προέλευση των πολυπλοειδιών, αλλά και την διαφοροποίηση των ειδών. / Bellevalia, an attractive genus of the Hyacinthaceae family, consists of small perennial geophytes interesting from both taxonomical and karyological points of view. In Greece, eight taxa of the genus had been recorded, three of which are endemic, i.e. Bellevalia hyacinthoides, B. brevipedicellata and B. sitiaca, while the remaining four, B. dubia subsp. boissieri, B. trifoliata, B. romana and B. ciliata, are Mediterranean elements. Additionally, B. edirnensis, one of the most localized endemics of European Turkey, was found in the framework of this thesis, adding a new species to the flora of Greece. In the present thesis three East Mediterranean species have been studied: B. nivalis, B. flexuosa and B. longistyla. Τhe above mentioned taxa of the genus were studied from a taxonomical point of view, as well as cytologically, with classical karyological techniques (squash technique) in order to determine chromosome number, ploidy level and karyotype morphology. Moreover, for the Greek taxa cytogenetic (staining with fluorochrome, in order to locate GC- and AT-rich areas) and molecular-cytogenetic techniques (fluorescence in situ hybridization, -FISH- in ribosomal genes). Cytogenetic, molecular cytogenetic studies and the determination of the genome size using flow cytometry are given for the first time for the genus Bellevalia. The results by this first attempt to study Bellevalia taxa, through the implementation of cytogenetic and molecular-cytogenetic techniques and statistical analysis, besides taxonomic and classical karyomorphometric analysis, provides valuable information on the taxonomic relationships among the species, the phylogeny of the genus, the origin of polyploids, as well as on chromosomal identification, genome organization and differentiation.
|
142 |
Processo biotecnol?gico voltado a produ??o de estoques poliploides do camar?o-branco litopenaeus vannamei (decapoda, penaeidae)Accioly, Ingrid Vilar 25 March 2013 (has links)
Made available in DSpace on 2014-12-17T14:05:22Z (GMT). No. of bitstreams: 1
IngridVA_TESE_Parcial.pdf: 1546645 bytes, checksum: 082397e35198d8c6624ddff83583508c (MD5)
Previous issue date: 2013-03-25 / Conselho Nacional de Desenvolvimento Cient?fico e Tecnol?gico / without practical results so far. Protocols used in biotechnological cultured aquatic organisms aimed at
increasing growth rates and disease resistance, have been studied and perfected. Among the available
techniques, the application of chromosomal manipulation, although still nascent, is presented as a tool
aimed at mitigating ecological and economical issues in shrimp farming. The polyploidization artificial
method already employed in fish and shellfish, has been widely researched for use in farmed shrimp.
Some limitations of this method of expansion in shrimp refer to a better knowledge of cytogenetic
aspects, the level of sexual dimorphism and performance in growing conditions. To contribute on some
of these issues, the present study aimed to characterize cytogenetic species Litopenaeus vannamei
(Decapoda) and Artemia franciscana (Anostraca), analyze the effectiveness of methods for detection of
ploidy, through the use of flow cytometry in processes of induction polyploidy cold thermal shock at
different stages of development of newly fertilized eggs. Additionally, aimed also the qualitative and
quantitative comparison of larval development between diploid and polyploid organisms, besides the
identification of sexual dimorphism in L. vannamei, through geometric morphometrics. The results
provide information relevant to the improvement and widespread use of biotechnological methods
applied toward national productivity in shrimp farming / A melhoria gen?tica de planteis reprodutores, baseada no melhoramento cl?ssico tem sido tentada, mas
sem resultados pr?ticos, at? o momento. Protocolos biotecnol?gicos utilizados em organismos
aqu?ticos cultivados que visam aumentar as taxas de crescimento e resist?ncia a doen?as, v?m sendo
estudados e aperfei?oados. Entre as t?cnicas dispon?veis, a aplica??o de manipula??o cromoss?mica,
embora ainda incipiente, se apresenta como ferramenta voltada a mitigar quest?es ecol?gicas e
econ?micas na carcinicultura. A poliploidiza??o artificial, m?todo j? empregado em peixes e moluscos,
vem sendo largamente pesquisado para o uso em camar?es cultivados. Algumas limita??es da expans?o
deste m?todo em camar?es se referem a um melhor conhecimento de aspectos citogen?ticos, do n?vel
de dimorfismo sexual e performance em condi??es de cultivo. Visando contribuir sobre algumas destas
quest?es, realizou-se ? caracteriza??o citogen?tica das esp?cies Litopenaeus vannamei (Decapoda) e
Artemia franciscana (Anostraca), foi analisada tamb?m a efic?cia do uso da citometria de fluxo como
m?todo de detec??o da ploidia em processos de indu??o artificial por choque t?rmico ? frio, em
diferentes fases do desenvolvimento de ovos rec?m-fertilizados de Litopenaeus vannamei.
Adicionalmente, visou-se, ainda, a compara??o qualitativa e quantitativa do desenvolvimento larval
entre organismos diploides e poliploides, al?m da identifica??o do dimorfismo sexual em L. vannamei,
por meio da morfometria geom?trica. Os resultados obtidos propiciam informa??es que contribuem
para o aprimoramento e difus?o do uso aplicado de m?todos biotecnol?gicos voltados ao incremento
da produtividade na carcinicultura nacional / 2020-01-01
|
143 |
Os cromossomos holocêntricos de rhynchospora vahl (cyperaceae): Evolução cariotípica e diversidade de sequências satélitesSANTOS, Tiago Ribeiro Barros dos 04 March 2016 (has links)
Submitted by Irene Nascimento (irene.kessia@ufpe.br) on 2016-08-12T19:39:07Z
No. of bitstreams: 2
license_rdf: 1232 bytes, checksum: 66e71c371cc565284e70f40736c94386 (MD5)
Tese_versão_final_biblioteca_português.pdf: 2265965 bytes, checksum: 707851ccf48e28513fc34178bca7c739 (MD5) / Made available in DSpace on 2016-08-12T19:39:07Z (GMT). No. of bitstreams: 2
license_rdf: 1232 bytes, checksum: 66e71c371cc565284e70f40736c94386 (MD5)
Tese_versão_final_biblioteca_português.pdf: 2265965 bytes, checksum: 707851ccf48e28513fc34178bca7c739 (MD5)
Previous issue date: 2016-03-04 / Capes / Cromossomos holocêntricos apresentam atividade cinetocórica difusa e essa organização favorece, em teoria, rápidas variações cromossômicas numéricas e o acúmulo de DNA satélite (DNAsat) predominantemente nas regiões terminais dos cromossomos. O gênero de plantas Rhynchospora (Cyperaceae), um dos diversos grupos com esse tipo cromossômico, apresenta espécies com cariótipos entre 2n = 4 e 2n = 58, cuja variação é atribuída à poliploidia e a eventos de quebra/fusão, levando a disploidias. Quanto à distribuição de DNAsat, o único relato até o momento revelou uma baixa proporção dessas sequências, com o único repeat identificado (Tyba) associado aos holocentrômeros. Com o intuito de entender como a estrutura centromérica difusa interfere na organização de sequências ao longo do cromossomo e na evolução do cariótipo como um todo, foram realizadas uma análise de reconstrução dos números cromossômicos ancestrais de Rhynchospora em um contexto filogenético e a caracterização de DNAsats em três espécies do gênero. O complemento cromossômico 2n = 10 foi indicado como o mais provável para o ancestral do gênero, tendo sido mantido em diferentes taxa. A maioria dos clados mostrou números estáveis e a homoplasia de cariótipos foi observada em uma frequência relativamente baixa. Os genomas de R. ciliata/R. globosa e R. tenuis apresentaram duas e uma família(s) de DNAsat, respectivamente, com um padrão de condensação típico (blocos condensados em intérfase). Uma localização preferencial nos terminais cromossômicos foi observada apenas para os DNAsat de R. globosa. Três tipos de cromatina foram revelados pela distribuição dessas sequências: (1) associadas à heterocromatina e presente na forma de cromocentros em intérfase e blocos nos cromossomos metafásicos (R. ciliata e R. globosa); (2) compactados em interfase mas parcialmente descondensados em metáfase e não diretamente associados à heterocromatina (R. ciliata e R. tenuis); ou (3) associados aos holocentrômeros (R. ciliata e R. tenuis). De forma geral em Rhynchospora, os eventos de fusão e fissão parecem atuar localmente no remodelamento dos cariótipos e as sequências satélites não mostram uma tendência única de distribuição. A estrutura centromérica difusa, portanto, não determina em larga escala a dinâmica evolutiva dos cromossomos do gênero. / Holocentric chromosomes show diffuse kinetochore activity, what would lead to fast evolution of chromosome numbers and a biased distribution of satellite repeats. The plant genus Rhynchospora (Cyperaceae) possesses holocentric chromosomes and shows a large chromosome number variation (2n = 4 to 2n = 58) attributed to polyploidy and frequent fusion/fission events, leading to dysploidy. Regarding satellite repeats (satDNA), the only investigated species showed a low proportion of these sequences, with the single family identified associated to the holocentromeres. In the present work, aiming to better understand how the diffuse centromere organisation could interfere with the distribution of satellite repeats along the chromosomes and with the karyotype evolution as a whole, we combined a reconstruction of Rhynchospora chromosome numbers in a phylogenetic framework and the characterisation of satellite repeats in three selected species. The karyotype with 2n = 10 was suggested as the ancestral state and was maintained in different lineages. Most of the clades showed stable chromosome number and recurrent karyotypes changes (leading to homoplasies) were detected in low frequency. All Rhynchospora species analysed (R. ciliata, R. globosa and R. tenuis) showed a higher diversity of satellite repeats than R. pubera, with most of the repeats showing a typical condensation profile (clustered in interphase). A preferential terminal location on chromosomes was only observed for R. globosa satDNAs. These sequences, however, might represent different chromatin types, organized in distinct ways: (1) associated to the heterochromatin and clustered in interphase and metaphase (identified in R. ciliata and R. globosa only); (2) clustered in interphase but partially decondensed in metaphase and not associated to heterochromatin domains (R. ciliata e R. tenuis); (3) associated to the holocentromeres (R. ciliata e R. tenuis). Taken together, at least for Rhynchospora, fusion/fission events may not act in a broader way in the reshuffling of karyotypes and satellite repeats distribution do not appeared to be biased towards the chromosome termini. A non-localized centromere, therefore, must not constrain, in a large scale, the chromosome evolution of the genus.
|
144 |
Transposable elements in the salmonid genomeMinkley, David Richard 30 April 2018 (has links)
Salmonids are a diverse group of fishes whose common ancestor experienced an evolutionarily important whole genome duplication (WGD) event approximately 90 MYA. This event has shaped the evolutionary trajectory of salmonids, and may have contributed to a proliferation of the repeated DNA sequences known as transposable elements (TEs). In this work I characterized repeated DNA in five salmonid genomes. I found that over half of the DNA within each of these genomes was derived from repeats, a value which is amongst the highest of all vertebrates. I investigated repeats of the most abundant TE superfamily, Tc1-Mariner, and found that large proliferative bursts of this element occurred shortly after the WGD and continued during salmonid speciation, where they have produced dramatic differences in TE content among extant salmonid lineages. This work provides important resources for future studies of salmonids, and advances the understanding of two important evolutionary forces: TEs and WGDs. / Graduate / 2019-04-19
|
145 |
Využití metody Hyb-Seq pro rekonstrukci retikulátní vnitrorodové fylogeneze: příklad z polyploidního rodu Curcuma L. (Zingiberaceae) / Application of Hyb-Seq method for reconstruction of reticulate infrageneric phylogeny: example from polyploid genus Curcuma L. (Zingiberaceae)Skopalíková, Jana January 2017 (has links)
This master thesis focuses on the phylogeny of hybridogenous and polyploid genus Curcuma from family Zingiberaceae using Next-Generation Sequencing data from hundreds to thousands nuclear loci. This approach seems to be better than widely used cpDNA and ITS sequencing especially in the case of hybridogenous and polyploid groups. Data for phylogeny reconstruction were generated using Hybridization-based sequencing (Hyb-Seq) method which combines target enrichment and genome skimming strategies. Data analysis was performed primarily using pipeline HybPhyloMaker especially created for Hyb-Seq data analysis. Twenty-seven species from the genus Curcuma and three outgroup species were sequenced in this work. Phylogenetic trees based on all 1 154 and 811 selected nuclear low- copy genes show high support values of all nodes which is in contrast to plastome and rDNA phylogeny with lower support values in some nodes and incongruences in topology compared to low-copy genes phylogeny. Phylogenetic networks inferred from low-copy genes, lineage movement analysis and monophyly tests agree with published hypotheses of interlineage hybrid origin of three species - C. vamana, C. myanmarensis and C. roscoeana. These analyzes show likely hybrid origin of C. candida too with parents from the group Curcuma I and basal...
|
146 |
Etude moléculaire de mécanismes de résistance acquise aux dérivés du platine et évaluation pharmacologique de nouveaux dérivés du platine à activité antitumorale / Molecular assessment of acquired resistance to platinum derivates and pharmacological evaluation of new platinum complexesMoretto, Johnny 03 October 2011 (has links)
Les dérivés du platine (i.e. cisplatine et oxaliplatine) représentent une des classes pharmacologiques les plus utilisées en oncologie, notamment dans les cancers colorectaux. Cependant, leur efficacité est limitée par l’émergence de résistances acquises. Nous avons alors étudié in vitro dans différentes lignées cancéreuses coliques humaines (HCT116, LoVo, SW480, HT29) les conséquences à long terme des dérivés du platine lorsqu’ils sont utilisés dans des conditions tenant compte de la sensibilité cellulaire. Ils provoquent des cassures double-brin (objectivées par l’expression de -H2AX), dont le taux dépend du système p53/p21, du complexe MRN et du niveau de stabilité microsatellitaire. Ils induisent aux plus fortes concentrations ( IC50), une cytostase qui s’accompagne de la formation de cellules géantes macrocytaires et endopolyploïdes, dont certaines acquièrent un phénotype sénescent. Dans le même temps, l’activation des mécanismes de réparation des CDB varie en fonction du dérivé du Pt et de la lignée considérée. A plus long terme, des cellules « résistantes » se développent : elles ont une ploïdie normale, et se caractérisent par une plus grande résistance aux dérivés du platine et la présence de novo d’anomalies chromosomiques récurrentes leur conférant un avantage sélectif potentiel en terme de prolifération. Ces mécanismes pourraient contribuer à expliquer en clinique la survenue d’une résistance à une chimiothérapie pourtant initialement efficace. Parallèlement, nous avons évalué in vitro et in vivo de nouveaux complexes de platine obtenus par pharmacomodulation, et associant un noyau intercalant dérivé de la phénanthroline ou de l’acridine. Les résultats in vitro montrent globalement une amélioration significative de la cytotoxicité. Toutefois, un des composés les plus cytotoxiques in vitro, le [(5,6-diméthyl-1,10-phénanthroline) (S,S-diaminocyclohexane)platine(II)], n’exerce pas d’effet antitumoral dans un modèle syngénique de cancer colique chez le rat BD-IX, mais montre une néphrotoxicité marquée. Ces données soulignent l’insuffisance du criblage in vitro et la discordance in vitro/in vivo. / Platinum compounds (i.e. cisplatin and oxaliplatin) represent a class of DNA-damaging agents widely used in clinic especially in the treatment of colorectal cancer. However, their effectiveness is restricted because of emergence of acquired resistance. Therefore, long-term effects of platinum compounds, used at conditions reflecting the in vitro cellular sensibility, were assessed in vitro in several human colon cancer cell lines (HCT116, LoVo, SW480, HT29). Their cytotoxicity is related to double-strand break formation (objectived by -H2AX expression), which depends on p53/p21 status, MRN complex and microsatellite stability of the cell line. Furthermore, at the highest concentrations ( IC50), cells stopped their proliferation and exhibited phenotypic alterations resulting from progressive polyploidy and/or senescence. In the same time, DNA repair systems are activated differently according to the platinum derivate and the cell line. At later stages, cells that are more resistant to platinum compounds than their parental counterpart emerged. They have recovered their basal level of ploidy and acquired de novo recurrent chromosomal aberrations. Such mechanisms could contribute to the recurrence of clinical malignancies, even after an effective initial response to chemotherapy. On the other hand, pharmacological evaluation of new platinum compounds with phenanthroline or acridine intercalating ligand was performed in vitro and in vivo. Globally, many compounds exhibited a higher cytotoxic effect than cisplatin or oxaliplatin in all cell lines studied. Unfortunately, in vivo investigations of one of the most cytotoxic compounds ([(5,6-dimethyl-1,10-phenanthroline) (S,S-diaminocyclohexane)platinum(II)]) did not exhibit antitumor effect in BD-IX rats bearing peritoneal carcinomatosis, whatever the route of administration used (systemic or local), but it displayed nephrotoxicity. These results query the in vitro/in vivo correlation and reconsider the place of the in vivo screening.
|
147 |
Advances in angraecoid orchid systematics in Tropical Africa and Madagascar: new taxa and hypotheses for their diversificationNunes De Matos Farminhão, João 22 April 2021 (has links) (PDF)
Les angrecoïdes constituent le groupe d'orchidées épiphytes le plus diversifié dans les Afrotropiques, comprenant environ 800 espèces. Bien que beaucoup d'attention leur aient été porté, certaines énigmes taxonomiques subsistent au sein des angraecoïdes, et les facteurs à l'origine de leur diversification rapide sont encore inconnus. Les angraecoïdes présentent une remarquable diversité en termes du nombre chromosomique, en faisant un système très approprié pour explorer l'impact des changements caryotypiques sur la cladogenèse, les taux de spéciation/extinction et la diversification morphologique dans le contexte des fluctuations climatiques en Afrique tropicale depuis le Miocène. En outre, grâce au large éventail des longueurs d'éperon nectarifère que ces orchidées présentent, elles ont fait l'objet, depuis Darwin, de recherches approfondies dans le cadre des interactions plantes-animaux. Ici, sur base de nouveaux arbres phylogénétiques produits en utilisant ITS-1 ainsi que cinq marqueurs plastidiques et englobant environ 40 % des espèces, nous fournissons un nouveau cadre taxonomique pour les principales lignées d'Angraecinae. De plus, le cadre taxonomique des angraecoïdes est mis à jour avec, notamment, la description de trois nouveaux genres et six nouvelles espèces. Cette nouvelle hypothèse phylogénétique nous a permis d'étudier si les changements des caryotypes et des pollinisateurs ont pu être les moteurs de la radiation évolutive des angraecoïdes. La reconstruction des états ancestraux du nombre chromosomique révèle une histoire caryotypique dominée par la dysploïdie descendante en Afrique tropicale continentale, où environ 90 % des espèces dérivent d'au moins un changement inféré de n = 17–18 à n = 25 au Miocène moyen. L’examen des intervalles de position du nectar par rapport au pollen dans les Afrotropiques a révélé qu'environ 3 % de la flore des angiospermes de Madagascar est probablement pollinisée par des sphinx, alors que cette proportion est d'environ 1,6 % en Afrique continentale. Les nombreux changements de guilde de pollinisateur vers la sphingophilie ayant eu lieu chez les angraecoïdes seraient à l’origine d’environ 31 % des espèces, y compris certaines lignées ayant les taux de spéciation les plus élevés. En dehors du domaine de la sphingophilie, de nouveaux exemples possibles d’ornithophilie, de phalénophilie et de pollinisation par des tipules à long proboscis/microlepidoptères sont discutées. Des perspectives de recherche concernant l'évolution génomique chez les angraecoïdes et l'impact et les mécanismes des changements des sites de fixation des pollinies sont suggérées. Enfin, certaines priorités pour l’observation de nouveaux pollinisateurs sur le terrain et les frontières de l’alpha et bêta-taxonomie chez les angraecoïdes sont présentées. / Doctorat en Sciences / info:eu-repo/semantics/nonPublished
|
148 |
Comparative Genomics of Gossypium spp. through GBS and Candidate Genes – Delving into the Controlling Factors behind Photoperiodic FloweringYoung, Carla Jo Logan 16 December 2013 (has links)
Cotton has been a world-wide economic staple in textiles and oil production. There has been a concerted effort for cotton improvement to increase yield and quality to compete with non-natural man-made fibers. Unfortunately, cultivated cotton has limited genetic diversity; therefore finding new marketable traits within cultivated cotton has reached a plateau. To alleviate this problem, traditional breeding programs have been attempting to incorporate practical traits from wild relatives into cultivated lines. This incorporation has presented a new problem: uncultivated cotton hampered by photoperiodism.
Traditionally, due to differing floral times, wild and cultivated cotton species were unable to be bred together in many commercial production areas world-wide. This worldwide breeding problem has inhibited new trait incorporation. Before favorable traits from undomesticated cotton could be integrated into cultivated elite lines using marker-assisted selection breeding, the markers associated with photoperiod independence needed to be discovered. In order to increase information about this debilitating trait, we set out to identify informative markers associated with photoperiodism.
This study was segmented into four areas. First, we reviewed the history of cotton to highlight current problems in production. Next, we explored cotton’s floral development through a study of floral transition candidate genes. The third area was an in-depth analysis of Phytochrome C (previously linked to photoperiod independence in other crops). In the final area of study, we used Genotype-By-Sequencing (GBS), in a segregating population, was used to determine photoperiod independence associated with single nucleotide polymorphisms (SNPs).
In short, this research reported SNP differences in thirty-eight candidate gene homologs within the flowering time network, including photoreceptors, light dependent transcripts, circadian clock regulators, and floral integrators. Also, our research linked other discrete SNP differences, in addition to those contained within candidate genes, to photoperiodicity within cotton. In conclusion, the SNP markers that our study found may be used in future marker assisted selection (MAS) breeding schemas to incorporate desirable traits into elite lines without the introgression of photoperiod sensitivity.
|
149 |
Hybridization and whole genome duplication as drivers of biological invasionsMattingly, Kali Z. January 2021 (has links)
No description available.
|
150 |
Hybridation et dynamique des populations chez les renouées du Japon: Espèces non-indigènes invasives du genre Fallopia Adans. (Polygonaceae) en Belgique / Hybridization and dynamics of populations of the Japanese knotweeds: Alien invasive species of the genus Fallopia (Polygonaceae) in BelgiumTiébré, Marie-Solange 24 October 2007 (has links)
The Japanese knotweeds are invasive alien clonal species originating in Asia (Japan, Korea, Taiwan and Nord of China). They were introduced in Europe at the beginning of the 19th century. They are now some of the most troublesome invasive alien species in Europe and in the United States. In Belgium, a complex of four taxa and a hybrid represents them. All these taxa take part in the pattern of invasion and represent an excellent opportunity for studies of population biology in Western continental Europe. The presence from at least three taxa and a hybrid is confirmed by cytological, genetic and morphological studies. Vegetative reproduction is recognized as the main mode of reproduction and expansion of these taxa in the introduce range. However, interspecific hybridization events are observed confirming the restoration of the sexual reproduction by hybridization within this complex species in Belgium. Hybrid F. x bohemica with various ploidy levels from tetraploid to octoploid is observed. An increase in genotypic and morphological diversity is shown at the hybrid F. x bohemica which missed with the parental species. This could increase the potential of Japanese knotweeds to adapt to the new environment and contribute to the invasive success of these taxa in Belgium. Assignment test indicates a genetic pool differentiated at the hybrid F. x bohemica and not a mixture of the genetic pool of the parental species as expected for hybrid taxa. Hybrid F. x bohemica has always been considered as rare in Belgium and of horticultural origin. An analysis of the spatial distribution shows that hybrid F. x bohemica is widespread in Belgium and that its abundance depends on the areas. An analysis of extent of differentiation between groups of hybrid geographically distant could not provide proof of an independent evolution of hybrid populations under limited gene flow. An analysis of the sexual reproduction capacity and dispersal of seeds shows important production of viable seeds and consequent seed rain. Hybrid seeds may be dispersed beyond 16m, leading the possibility of founding new individuals and to contribute to the invasive success of these taxa. However, a trend towards decreasing germination rate is shown after a cold period. An analysis of the distribution at the landscape scale shows that the dynamics of colonization of habitats patches by Japanese knotweeds rising mainly from clonal propagation in spite of important pressure of propagule. The knotweeds prefer human disturbed habitats with a clear prevalence of communication routes. This leads the possibility of dispersing towards the adjacent habitats patches. A high dynamics of establishment of propagule was not observed at the hybrid plants compared with the parents plants in spite of the increase in genotypic diversity and the consequent pressure of propagule. Lastly, proposals for the integrated management of these taxa are proposed in the Belgium context. Their management will have first to identify hybrids and taxa involved. Emasculation and management of the existing clones represent solutions to prevent flowering and expansion of these taxa. An active management of disturbed habitats may represent alternative to prevent the invasion by Japanese knotweeds / Les renouées du Japon sont des espèces clonales non-indigènes originaires dAsie (Japon, Corée, Taiwan et Nord de la Chine). Elles ont été introduites en Europe au début du 19è siècle. Elles font désormais partie des espèces non-indigènes les plus invasives en Europe et aux Etats Unis. En Belgique, elles sont représentées par un complexe de quatre taxons et un hybride. Tous ces taxons participent à la dynamique dinvasion et représentent un modèle dintérêt pour les études de biologie des populations en Europe continentale occidentale. La présence dau moins trois taxons et un hybride est confirmée par des études cytologiques, génétiques et morphologiques. La reproduction végétative est reconnue comme le principal mode de reproduction et dexpansion de ces taxons dans la zone dintroduction. Toutefois, des phénomènes dhybridation interspécifique sont observés confirmant la restauration de la reproduction sexuée par hybridation au sein de ce complexe despèces en Belgique. Lhybride F. x bohemica avec différents niveaux de ploïdie, du tétraploïde à loctoploïde, est observé. Un accroissement de la diversité génotypique et morphologique qui manquait aux espèces parents est démontré chez lhybride F. x bohemica. Ceci pourrait augmenter le potentiel des renouées du Japon à sadapter au nouvel environnement et contribuer au succès invasif de ces taxons en Belgique. Un test dassignation indique un pool génétique différencié chez lhybride F. x bohemica et non un mélange du pool génétique des espèces parentales comme attendu dans le cadre de taxons hybrides. Lhybride F. x bohemica a toujours été considéré comme rare en Belgique et dorigine horticole. Une analyse de la répartition spatiale montre que lhybride F. x bohemica est très répandu en Belgique et que son abondance dépend des régions. Une analyse de létendue de la différenciation entre groupes dindividus hybrides géographiquement distants na pas pu fournir de preuve dune évolution indépendante des populations hybrides sous un flux de gènes limité. Une analyse de la capacité de reproduction sexuée et de dispersion des graines démontre une production importante de graines viables et une pluie de graines conséquente. Les graines hybrides sont capables de se disperser à plus de 16m, laissant la possibilité de fonder de nouveaux individus et de contribuer au succès invasif de ces taxons. Cependant, une tendance à la diminution du potentiel de germination est observée après une période de froid chez ces taxons. Une analyse de la distribution à léchelle du paysage a permis dinterpréter la dynamique de colonisation des taches dhabitats par les renouées du Japon comme relevant principalement de la propagation clonale malgré une pression de propagule importante. Les renouées du Japon préfèrent les habitats perturbés par lhomme avec une nette prédominance des réseaux linéaires de communications. Ceci laisse ensuite la possibilité de se disperser vers les taches dhabitats adjacents. Une dynamique détablissement de propagules plus importante na pas été observée chez les plants hybrides comparées aux plants parents malgré laccroissement de diversité génotypique et la pression de propagules considérable. Enfin, des pistes pour la gestion intégrée des renouées du Japon en Belgique sont proposées. Cette gestion devra en priorité identifier les hybrides et les taxons en présence. Des mesures démasculation et de gestion des clones existants pourraient constituer une solution pour empêcher la floraison et lexpansion de ces taxons. Une gestion active des habitats perturbés pourrait représenter une alternative pour prévenir linvasion par les renouées du Japon
|
Page generated in 0.0833 seconds