Le dioxyde d'uranium (UO2) est le combustible nucléaire le plus largement répandu dans le monde pour alimenter les centrales nucléaires et plus particulièrement les réacteurs à eau pressurisée (REP). En réacteur, la fission des atomes d'uranium crée des produits de fission et des défauts ponctuels dans le matériau combustible. La compréhension de l'évolution de ces dégâts d'irradiation nécessite une approche de modélisation multi-échelle, de l'échelle de la pastille combustible à l'échelle atomique. Nous avons utilisé une méthode de calcul de structure électronique (DFT), pour modéliser les dégâts d'irradiation dans UO2 à l'échelle atomique. Un terme d'interaction Coulombienne de type Hubbard est ajouté au formalisme de la DFT standard pour prendre en compte les fortes corrélations des électrons 5f dans l'UO2. Cette méthode a été utilisée pour étudier les défauts ponctuels dans différents états de charge ainsi que l'incorporation et la diffusion du krypton dans le dioxyde d'uranium. Cette étude nous a permis d'obtenir des données clés pour les modèles aux échelles supérieures mais aussi pour interpréter des résultats expérimentaux. En parallèle de cette étude, trois pistes d'amélioration de l'état de l'art des calculs pour la description de l'UO2 ont été explorées : la prise en compte du couplage spin-orbite, l'application de fonctionnelles permettant la prise en compte des interactions non locales telles que les interactions de van der Waals importantes pour les gaz rares et l'utilisation de la théorie de champ dynamique moyen (Dynamical Mean Field Theory) combinée à la DFT afin de prendre en compte les corrélations dynamiques des électrons 5f. / Uranium dioxide (UO2) is worldwide the most widely used fuel in nuclear plants in the world and in particular in pressurized water reactors (PWR). In-pile the fission of uranium nuclei creates fission products and point defects in the fuel. The understanding of the evolution of these radiation damages requires a multi-scale modelling approach of the nuclear fuel, from the scale of the pellet to the atomic scale. We used an electronic structure calculation method based on the density functional theory (DFT) to model radiation damage in UO2 at the atomic scale. A Hubbard-type Coulomb interaction term is added to the standard DFT formalism to take into account the strong correlations of the 5f electrons in UO2. This method is used to study point defects with various charge states and the incorporation and diffusion of krypton in uranium dioxide. This study allowed us to obtain essential data for higher scale models but also to interpret experimental results. In parallel of this study, three ways to improve the state of the art of electronic structure calculations of UO2 have been explored: the consideration of the spin-orbit coupling neglected in current point defect calculations, the application of functionals allowing one to take into account the non-local interactions such as van der Waals interactions important for rare gases and the use of the Dynamical Mean Field Theory combined to the DFT method in order to take into account the dynamical effects in the 5f electron correlations.

Os estudos de modelagem molecular das interações entre ligantes baseado em oxindóis (isaepy, isapn, [Cu(isapn)]², isaenim e o SU9516) e as proteínas kinases dependentes de ciclina (CDK1 e CDK2) são apresentados neste trabalho. Uma inibição na atividade da CDK1 e CDK2, que catalisam a fosforilação de grupos específicos em proteínas, tem implicações na indução da apoptose celular. O objetivo é tentar determinar qual destes ligantes potencializa a inibição da síntese de ATP (adenosina trifosfato) em ADP (adenosina difosfato) no sítio ativo da CDK1 e CDK2 para, desta forma, induzir a apoptose de células cancerígenas. Os estudos realizados neste trabalho indicam que dentre os ligantes analisados, o isaepy e o isapn obtiveram melhores resultados de estabilidade e ligações de hidrogênio entre aminoácidos dentro do sítio. Analisamos a influência do íon Cu no aumento da eficácia do isapn na atividade inibitória (complexo [Cu(isapn)]²) e comparamos os resultados obtidos dos estudos do isapn e [Cu(isapn)]², quando inseridos no sítio de ligação do ATP da CDK1, com medidas de eletroforese em gel. Verificamos que os nossos resultados foram corroborados com as medidas de eletroforese. Também discutimos os resultados de cálculos de acoplamento hiperfino para o Cu no [Cu(isapn)]² em diferentes ambientes químicos e fizemos a comparação destes resultados com medidas de EPR. Desta forma, conseguimos verificar o ambiente químico do íon Cu e um aumento da estabilidade do isapn dentro do sítio estudado com a inserção do íon Cu. Este trabalho visa contribuir para a síntese de novos ligantes que aumentem a eficácia da inibição da síntese de ATP em ADP nas CDKs e também para a minimização dos custos através da diminuição da realização de experimentos que se baseiam em métodos de tentativa e erro. / Molecular modeling studies of the interaction of oxindol based ligands (isaepy, isapn [Cu(isapn)]²,isaenim and SU9516) with Cyclin Dependent Kinases proteins (CDK1 and CDK2) are presented here. CDK1 and CDK2 catalyze the phosphorylation of specific groups in proteins and inhibition of its activities implies in induction of cancer cells apoptosis. The goal is to determine which ligands increase the inhibition of ATP (adenosine triphosphate) into ADP (adenosine diphosphate) synthesis which occurs inside the CDK1 and CDK2 active site. We analyze the influence of the Cu ion on increasing the inhibitory activity in isapn ([Cu(isapn)]² metal complex). Comparisons between the results obtained from studies of the isapn and [Cu(isapn)]² inserted into the ATP binding site of CDK1 with measurements of gel electrophoresis were performed. The hyperfine coupling at Cu ion in [Cu(isapn)]² in different chemical environments are here obtained and the results are compared with EPR measurements. This work aims to contribute to the development of new ligands which increase the inhibition of the synthesis of ATP into ADP in the CDKs moreover we aim to assist in the reduction of the costs of measurements that are based on trial and error aproaches.

Os estudos de modelagem molecular das interações entre ligantes baseado em oxindóis (isaepy, isapn, [Cu(isapn)]², isaenim e o SU9516) e as proteínas kinases dependentes de ciclina (CDK1 e CDK2) são apresentados neste trabalho. Uma inibição na atividade da CDK1 e CDK2, que catalisam a fosforilação de grupos específicos em proteínas, tem implicações na indução da apoptose celular. O objetivo é tentar determinar qual destes ligantes potencializa a inibição da síntese de ATP (adenosina trifosfato) em ADP (adenosina difosfato) no sítio ativo da CDK1 e CDK2 para, desta forma, induzir a apoptose de células cancerígenas. Os estudos realizados neste trabalho indicam que dentre os ligantes analisados, o isaepy e o isapn obtiveram melhores resultados de estabilidade e ligações de hidrogênio entre aminoácidos dentro do sítio. Analisamos a influência do íon Cu no aumento da eficácia do isapn na atividade inibitória (complexo [Cu(isapn)]²) e comparamos os resultados obtidos dos estudos do isapn e [Cu(isapn)]², quando inseridos no sítio de ligação do ATP da CDK1, com medidas de eletroforese em gel. Verificamos que os nossos resultados foram corroborados com as medidas de eletroforese. Também discutimos os resultados de cálculos de acoplamento hiperfino para o Cu no [Cu(isapn)]² em diferentes ambientes químicos e fizemos a comparação destes resultados com medidas de EPR. Desta forma, conseguimos verificar o ambiente químico do íon Cu e um aumento da estabilidade do isapn dentro do sítio estudado com a inserção do íon Cu. Este trabalho visa contribuir para a síntese de novos ligantes que aumentem a eficácia da inibição da síntese de ATP em ADP nas CDKs e também para a minimização dos custos através da diminuição da realização de experimentos que se baseiam em métodos de tentativa e erro. / Molecular modeling studies of the interaction of oxindol based ligands (isaepy, isapn [Cu(isapn)]²,isaenim and SU9516) with Cyclin Dependent Kinases proteins (CDK1 and CDK2) are presented here. CDK1 and CDK2 catalyze the phosphorylation of specific groups in proteins and inhibition of its activities implies in induction of cancer cells apoptosis. The goal is to determine which ligands increase the inhibition of ATP (adenosine triphosphate) into ADP (adenosine diphosphate) synthesis which occurs inside the CDK1 and CDK2 active site. We analyze the influence of the Cu ion on increasing the inhibitory activity in isapn ([Cu(isapn)]² metal complex). Comparisons between the results obtained from studies of the isapn and [Cu(isapn)]² inserted into the ATP binding site of CDK1 with measurements of gel electrophoresis were performed. The hyperfine coupling at Cu ion in [Cu(isapn)]² in different chemical environments are here obtained and the results are compared with EPR measurements. This work aims to contribute to the development of new ligands which increase the inhibition of the synthesis of ATP into ADP in the CDKs moreover we aim to assist in the reduction of the costs of measurements that are based on trial and error aproaches.

<p>The present thesis concerns method development and applications in the field of first principles electronic structure calculations.</p><p>Augmented planewaves combine the simple planewaves with exact solutions of the Schrödinger equation for a spherical potential. This combination yields a very good set of basis functions for describing the electronic structure everywhere in a crystal potential. In the present work, developments of the original augmented planewave (APW) method are presented. It is shown that the exact APW eigenvalues can be found using information from the eigenvalues of the APW secular matrix. This provides a more efficient scheme to solve the APW eigenvalue problem, than the traditional evaluation of the secular determinant. Further, a new way of linearizing the APW method is presented and compared to the traditional linearized APW method (LAPW). Using a combination of the original APW basis functions and the so called local orbitals (lo), the APW+lo linearization is found to reproduce the results of the LAPW method, but already at a smaller basis set size. Another advantage of the new linearization is a faster convergence of forces, with respect to the basis set size, as compared to the LAPW method.</p><p>The applications include studies of the non-collinear magnetic configuration in the fcc-based high-temperature phase of iron, γ-Fe. The system is found to be extremely sensitive to volume changes, as well as to a tetragonal distortion of the cubic unit cell. A continuum of degenerate spin spiral configurations, including the global energy minimum, are found for the undistorted crystal. The in-plane anisotropy of the ideal interface between a ferromagnetic layer of bcc Fe and the semiconducting ZnSe crystal is also investigated. In contrast to the four-fold symmetric arrangement of the atoms at the interface, the in-plane magnetic anisotropy displays a large uniaxiality. The calculated easy axes are in agreement with experiments for both Se and Zn terminated interfaces. In addition, calculations of the hyperfine parameters were performed for Li intercalated battery materials.</p>

The present thesis concerns method development and applications in the field of first principles electronic structure calculations. Augmented planewaves combine the simple planewaves with exact solutions of the Schrödinger equation for a spherical potential. This combination yields a very good set of basis functions for describing the electronic structure everywhere in a crystal potential. In the present work, developments of the original augmented planewave (APW) method are presented. It is shown that the exact APW eigenvalues can be found using information from the eigenvalues of the APW secular matrix. This provides a more efficient scheme to solve the APW eigenvalue problem, than the traditional evaluation of the secular determinant. Further, a new way of linearizing the APW method is presented and compared to the traditional linearized APW method (LAPW). Using a combination of the original APW basis functions and the so called local orbitals (lo), the APW+lo linearization is found to reproduce the results of the LAPW method, but already at a smaller basis set size. Another advantage of the new linearization is a faster convergence of forces, with respect to the basis set size, as compared to the LAPW method. The applications include studies of the non-collinear magnetic configuration in the fcc-based high-temperature phase of iron, γ-Fe. The system is found to be extremely sensitive to volume changes, as well as to a tetragonal distortion of the cubic unit cell. A continuum of degenerate spin spiral configurations, including the global energy minimum, are found for the undistorted crystal. The in-plane anisotropy of the ideal interface between a ferromagnetic layer of bcc Fe and the semiconducting ZnSe crystal is also investigated. In contrast to the four-fold symmetric arrangement of the atoms at the interface, the in-plane magnetic anisotropy displays a large uniaxiality. The calculated easy axes are in agreement with experiments for both Se and Zn terminated interfaces. In addition, calculations of the hyperfine parameters were performed for Li intercalated battery materials.

The goal of solid state physics and chemistry is to gain deeper understanding of the basic principles of condensed matter. This ongoing process is achieved by the combination of experimental methods and theoretical models. One theoretical approach are the so-called first-principles calculations, which are based on the concept of density functional theory (DFT). In order to test the reliability of a band structure calculation, its results have to be compared with experiments. Since the electron density, the main constituent of DFT codes, cannot be directly determined experimentally with sufficient accuracy (e.g., by X-ray diffraction), other experimentally available properties are needed for the comparison with the calculation. A quantity that can be measured with high accuracy and that provides indirect information about the electron density is the electric field gradient (EFG). The EFG reflects local structural symmetry properties of the charge distribution surrounding a nucleus: the EFG is nonzero if the density deviates from cubic symmetry and therefore generates an inhomogeneous electric field at the nucleus. Since the EFG is highly sensitive to structural parameters and to disorder, it is a valuable tool to extract structural information. Furthermore, the evaluation of the EFG can provide valuable insight into the chemical bonding. Whereas the experimental determination of the quadrupole frequency and the closely related EFG has been possible for more than 70 years, reliable values for calculated EFGs could not be obtained before 1985, when an EFG module was implemented in the full-potential, linearised-augmented-plane-wave code WIEN. Since the full-potential local-orbital minimum-basis scheme FPLO is numerically very efficient and its local-orbital scheme allows an easy analysis of the different contributions to the EFG, one goal of this work was the implementation of an EFG module within the FPLO code. The newly implemented EFG module was applied to different systems: starting from simple metals, then approaching more complex systems and finally tackling strongly correlated oxides. Simultaneously, the EFGs for the studied compounds were determined experimentally by NMR spectroscopists. This close collaboration enables the comparison of the calculated EFGs with the experimental observations, which makes it possible to extract more physical and chemical information from the measured values regarding structural relaxation, distortion, the chemical bond or the relevance of electron correlation. In the last part of this work, the importance of corrections that go beyond the EFG are discussed. Such corrections arise for any multipole order of the hyperfine interactions, and are due to electron penetration into the nucleus. A correction similar to the isomer shift, coined here the &amp;quot;quadrupole shift&amp;quot; is examined in detail.

The present state of modeling radio-induced effects at the cellular level neglects to account for the microscopic inhomogeneity of the nucleus from the non-aqueous contents by approximating the entire cellular nucleus as a homogenous medium of water. Charged particle track-structure calculations utilizing this principle of superposition are thereby neglecting to account for approximately 30% of the molecular variation within the nucleus. To truly understand what happens when biological matter is irradiated, charged particle track-structure calculations need detailed knowledge of the secondary electron cascade, resulting from interactions with not only the primary biological component – water – but also the non-aqueous contents, down to very low energies. This paper presents developments for a novel approach, which to our knowledge has never been done before, to reducing the homogenous water approximation. The purpose of our work is to develop of a completely self-consistent computational method for predicting molecule-specific ionization, excitation, and scattering cross sections in the very low energy regime that can be applied in a condensed history Monte Carlo track-structure code. The present methodology begins with the calculation of a solution to the many-body Schrödinger equation and proceeds to use Monte Carlo methods to calculate the perturbations in the internal electron field to determine the aforementioned processes. Results are computed for molecular water in the form of linear energy loss, secondary electron energies, and ionization-to-excitation ratios and compared against the low energy predictions of the GEANT4-DNA physics package of the Geant4 simulation toolkit.

Orientador: Augusto Batagin Neto / Resumo: Polímeros orgânicos conjugados são considerados materiais de grande relevância para aplicações tecnológicas variadas, principalmente devido às suas propriedades optoeletrônicas únicas e métodos utilizados em sua síntese. Nesse contexto, os derivados de polipirrol (PPy) têm sido amplamente empregados. A grande variabilidade de síntese desse material permite a produção de uma série de derivados com propriedades distintas, permitindo sua aplicação em diversas áreas. Neste trabalho, cálculos de estrutura eletrônica foram realizados para avaliar a influência de grupos laterais nas propriedades estruturais, ópticas, eletrônicas e de reatividade de derivados de PPy, em especial para aplicações como sensores químicos. Os cálculos foram feitos para sistemas oligoméricos aplicando a teoria do funcional da densidade. Estudos de preliminares foram conduzidos utilizando dois funcionais distintos para otimização de geometria e avaliação de propriedades optoeletrônicas. Estudos comparativos da alternância de comprimento de ligação, distribuição espacial e energética dos orbitais de fronteira, gaps eletrônicos, energias de ligação de éxcitons, espectros de absorção óptica, densidade eletrônica de estados e reatividade local foram conduzidos para cada derivado e a influência dos grupos laterais foi discutida em termos de suas propriedades de inserção/retirada de elétrons. Um conjunto de regras simples (equações lineares) foi proposto para a predição de propriedades optoeletrônicas de derivado... (Resumo completo, clicar acesso eletrônico abaixo) / Abstract: Conjugated organic polymers have been considered interesting materials for varied technological applications, mainly due to their unique optoelectronic properties and variety of methods employed in their synthesis. In this context, polypyrrole (PPy) derivatives have been widely employed. The great versatility of synthesis of this material allows the production of a number of derivatives with distinct properties, allowing their application in several areas. In this report, aiming to guide the design of compounds with specific features, electronic structure calculations were conducted to evaluate the influence of side groups in the structural, optical and electronic properties of PPy derivatives, specially for application in chemical sensors. The calculations were carried out for oligomeric systems in the framework of the density functional theory. Preliminary benchmark studies were conducted by employing two distinct functionals for geometry optimization and evaluation of optoelectronic properties. Comparative studies of the bond length alternation, spatial and energetic distribution of the frontier orbitals, electronic gaps, exciton binding energies, optical absorption spectra, electronic density of states and local reactivity were conducted for each derivative and the influence of the side groups was discussed in terms of their electron donation/withdrawing properties. A set of simple rules (linear equations) was proposed for the prediction of optoelectronic properties of PP... (Complete abstract click electronic access below) / Mestre

Neste trabalho realizamos um estudo do comportamento do momento magnético e do deslocamento isomérico de uma impureza intersticial de Fe em hospedeiros metálicos de valências 4 (Ti, Zr), 3 (Sc, Y). Investigamos também impurezas intersticiais e substitucionais de Mo e Fe em hospedeiros divalentes. Para realizar este estudo fizemos cálculos de estrutura eletrônica utilizando o RS-LMTO-ASA (\"Real Space - Linear Muffin-Tin Orbital - Atomic Spherical Approximation\"), um método de primeiros princípios dentro da aproximação do funcional densidade local, implementado no espaço real. Calculamos o momento magnético no sítio da impureza nos sistemas acima e constatamos que a impureza intersticial de Fe é não magnética nos hospedeiros de valências 4 e 3, e que tanto as impurezas intersticiais como as substitucionais podem apresentar momento magnético nos hospedeiros divalentes. Mostramos que para os sistemas divalentes o momento magnético depende fortemente da relaxação. Os nossos resultados são explicados através de um modelo simples, baseado no modelo de Wolff. Investigamos também o comportamento do deslocamento isomérico no sítio da impureza de Fe nesses vários sistemas. Constatamos que os nossos resultados concordam razoavelmente bem com os dados experimentais e explicam o comportamento das tendências observadas. / In the present work, we have studied the magnetic moments and the behavior of the isomer shift at the interstitial Fe impurity site in Ti, Sc, Zr and Y hosts. We have also investigated interstitial and substitutional Fe and Mo impurities in Ca, Sr and Yb hosts. To perform the calculations, we have used the RS-LMTO-ASA scheme, a first principles method, within the local spin density approximation, implemented in real space. We calculated the magnetic moments at the impurity site in the above systems and all the substitucional impurities are found to be magnetic. The results show that interstitial Fe is non-magnetic in the tri- and tetravalent hosts, but interstitial Fe and Mo impurities could develop local magnetic moment in divalent hosts. \'We show that the magnetic moment at the impurity site in these divalent hosts is strongly dependent on lattice relaxation. The results can be explained using simple arguments based on Wolff model. We have investigated in a systematic way the behavior of the isomer shift of Fe impurities in these systems. We observed that our results are in generally good agreement with experiment and lead to better understanding of the observed trends in terms of the volume occupied by the Fe in each host.

A termodinâmica computacional é uma ferramenta capaz de fornecer informações básicas sobre soluções e concentração de seus constituintes, em um dado sistema complexo a uma certa temperatura e pressão. Nos últimos anos, a união entre a teoria do funcional da densidade e a termodinâmica computacional tem renovado o estudo dos materiais intermetálicos ordenados, uma vez que os cálculos de estrutura eletrônica de primeiros princípios são hoje capazes de proporcionar resultados extremamente precisos para as energias de formação de compostos estequiométricos. Dentro deste contexto, investigamos os diagramas de fases dos sistemas Fe-Al, Mo- Fe, Cr-Al, Fe-Cr, Fe-Cr-Al na estrutura cúbica de corpo centrado utilizando o método Full-Potential Linear Augmented Plane Waves(FP-LAPW) aliado ao Método Variacional de Clusters(CVM) na aproximação do tetraedro irregular. Através do método FP-LAPW determinamos a energia total de configurações cristalinas dos sistemas cúbicos de corpo centrado. Esses valores são utilizados como parâmetros de entrada do CVM para a determinação do potencial termodinâmico do sistema em suas diferentes fases e os correspondentes equilíbrios entre essas fases em função da composição e da temperatura (diagrama de fases). Embora o Fe-Al tenha grande interesse tecnológico, o seu comportamento magnético é bastante complicado. A inclusão de Cr na liga de Fe-Al tem um alto interesse industrial na utilização desta ligas em altas temperaturas, mas o banco de dados referentes as caracteristicas estruturais e eletrônicas são escassos. Neste contexto de aplicações procuramos investigar as características estruturais e eletrônicas buscando correlacionar as informações experimentais com as obtidas via cálculo de estrutura eletrônica e o CVM. / Thermodynamics is a computational tool capable of providing information basics solutions and concentrations of constituents in a given complex system at a given temperature and pressure. In recent years, the union between the density functional theory and computational thermodynamics has renewed study of ordered intermetallic materials, since the electronic structure calculations from first principles are now able to provide extremely accurate results for the energies of formation of stoichiometric compounds. in this context, we investigate the phase diagrams of the systems Fe-Al, Fe- Mo, Cr-Al, Fe-Cr, Fe-Cr-Al in the body-centered cubic structure using the method Full-Potential Linear Augmented Plane Waves (FP-LAPW) ally the clusters variational method(CVM) in approximation of the tetrahedron irregular. Through the FP-LAPW method determines the total energy of the crystal with configurations body centered cubic systems. These values are used as input parameters of the CVM for the determination of the thermodynamic potential of the system in its different phases and the corresponding equilibrium between these phases as a function of composition and temperature (phase diagram). Although the Fe-Al has a great interest technology, its magnetic behavior is quite complicated. The inclusion of Cr in Fe-Al alloy has a high industrial interest in using this alloy in high temperatures, but the database regarding the structural characteristics and electronics are scarce. In this context we seek to investigate the application structural and electronic characteristics correlate the information seeking experiments with those obtained via the electronic structure calculation and the CVM.