Climate change has created potential major threats to global biodiversity. The multiple components of climate change are projected to affect all pillars of biodiversity, from genes over species to biome level. Of particular concerns are "tipping points" where the exceedance of ecosystem thresholds will possibly lead to irreversible shifts of ecosystems and their functioning. As biodiversity underlies all goods and services provided by ecosystems that are crucial for human survival and wellbeing, this paper presents potential effects of climate change on biodiversity, its plausible impacts on human society as well as the setting in addressing a global crisis. Species affected by climate change may respond in three ways: change, move or die. Local species extinctions or a rapidly affected ecosystem as a whole respectively might move toward its particular "tipping point", thereby probably depriving its services to human society and ending up in a global crisis. Urgent and appropriate actions within various scenarios of climate change impacts on biodiversity, especially in tropical regions, are needed to be considered. Foremost a multisectoral approach on biodiversity issues with broader policies, stringent strategies and programs at international, national and local levels is essential to meet the challenges of climate change impacts on biodiversity.

1. Organisms of all species must balance their allocation to growth, survival and recruitment. Among tree species, evolution has resulted in different life-history strategies for partitioning resources to these key demographic processes.Life-history strategies in tropical forests have often been shown to align along a trade-off between fast growth and high survival, that is, the well-known fast–slow continuum. In addition, an orthogonal trade-off has been proposed between tall stature—resulting from fast growth and high survival— and recruit- ment success, that is, a stature−recruitment trade-off. However, it is not clear whether these two independent dimensions of life-history variation structure tropical forests worldwide. 2. We used data from 13 large-scale and long-term tropical forest monitoring plots in three continents to explore the principal trade-offs in annual growth, sur- vival and recruitment as well as tree stature. These forests included relatively undisturbed forests as well as typhoon-disturbed forests. Life-history variation in 12 forests was structured by two orthogonal trade-offs, the growth−survival trade-off and the stature−recruitment trade- off. Pairwise Procrustes analysis revealed a high similarity of demographic relationships among forests. The small deviations were related to differences between African and Asian plots. 3. Synthesis. The fast–slow continuum and tree stature are two independent di- mensions structuring many, but not all tropical tree communities. Our discovery of the consistency of demographic trade-offs and life-history strategies across different forest types from three continents substantially improves our ability to predict tropical forest dynamics worldwide.

The objective of this thesis is to quantitatively understand the economic performance of protected area management strategies for forest and biodiversity conservation. Examples such as integrated conservation and development and eco tourism are assessed in terms of their ability to deliver on welfare benefits to local communities, and an assessment of the opportunity costs of forest conservation as a land use strategy. In addition the contribution of forest conservation in protected areas can make to poverty alleviation and economic development is also examined. The geographical focus of this study is the Albertine Rift region of East and Central Africa, stretching north from the southern end of Lake Tanganyika through the spine of Africa to the northern end of Lake Albert. The Albertine Rift is one of Africa’s most important landscapes for the conservation of forests and biodiversity. The overarching objective is addressed using a series of case studies empirically valuing the opportunity costs of conserving forests in a selection of sites in the central part of the Albertine Rift. The success of conservation is most often measured against progress in reducing habitat or species loss and not often in terms of the contribution of the protected area to poverty alleviation and local economic development. Achieving improvements of conservation strategies in the social dimension requires objective evidence on their effects. Economic valuation of protected area resources provides a quantitative means of assessing the promise and performance of conservation policies in achieving welfare benefits to local communities. This thesis provides three case studies each addressing current valuation and social issues in conservation and sets them in a context of managing protected areas in the broad dynamic setting of poverty alleviation and economic growth from a developing economy perspective. In addition two of the empirical studies are as concerned with methodological enquiry and the performance of novel environmental economic valuation techniques, such as the contingent valuation and choice modelling approaches, as the application of results to conservation questions. The empirical studies show that the benefits to local households and communities from their local forests may be greater than at first perceived. Across all protected area categories, biomes and income groups, households derived significant amounts of their overall income from their local protected area with large proportions of the value of goods harvested from forests being consumed in the home. Amongst income groups high income households often appropriated a greater share of the value of forest goods. There was no significant difference found between the household consumption and the sale of protected area products between income groups. The findings indicate that imposing reductions in forest use may increase poverty amongst local people whilst increasing household income will not necessarily reduce forest exploitation. This indicates that community conservation and integrated conservation and development programmes must target the poor forest adjacent households more actively to ensure poverty alleviation, whilst providing improved protection and law enforcement for effective conservation. It is also shown that biodiversity conservation can have an economic return through mountain gorilla eco-tourism. Findings show a disparity between what constitutes eco-tourism and the real values of tourists towards biodiversity conservation and local social benefits from protected areas. Despite showing a high marginal utility for biodiversity conservation, consumers are unwilling to pay for local community benefits from tourism as part of the permit price to view gorillas. Clearly the link between successful conservation and the welfare status of local communities is not sufficiently established in the minds of consumers to influence their spending decisions. The challenges of effectively mobilising communities to protect biodiversity are discussed in the context of the variable impacts of integrated conservation and development programs over the last three decades. Direct payment payments for conservation services schemes are discussed as an innovative tool to add to the gamut of community approaches currently on offer. Payments for conservation schemes are viewed with cautious optimism in terms of their possibility for success. Despite their allure of being more economically and socially efficient at achieving welfare and conservation objectives, given the complex nature of any society, no less research in to social and economic dynamics of protected area use by local communities would be needed to ensure success of such schemes. However, the overwhelming majority of benefits form protected areas are tied up in ecosystem services values. Mechanisms to generate funding and distribute payments for these benefits in terms of offsetting the local opportunity costs are essential to change local behavior and reduce forest degradation and destruction.

Parmi les lignées des Caesalpinioideae (dans la famille des Leguminosae), l’un des groupes importants au sein duquel les relations phylogénétiques demeurent nébuleuses est le « groupe Caesalpinia », un clade de plus de 205 espèces, réparties présentement entre 14 à 21 genres. La complexité taxonomique du groupe Caesalpinia provient du fait qu’on n’arrive pas à résoudre les questions de délimitations génériques de Caesalpinia sensu lato (s.l.), un regroupement de 150 espèces qui sont provisoirement classées en huit genres. Afin d’arriver à une classification générique stable, des analyses phylogénétiques de cinq loci chloroplastiques et de la région nucléaire ITS ont été effectuées sur une matrice comportant un échantillonnage taxonomique du groupe sans précédent (~84% des espèces du groupe) et couvrant la quasi-totalité de la variation morphologique et géographique du groupe Caesalpinia. Ces analyses ont permis de déterminer que plusieurs genres du groupe Caesalpinia, tels que présentement définis, sont polyphylétiques ou paraphylétiques. Nous considérons que 26 clades bien résolus représentent des genres, et une nouvelle classification générique du groupe Caesalpinia est proposée : elle inclut une clé des genres, une description des 26 genres et des espèces acceptées au sein de ces groupes. Cette nouvelle classification maintient l’inclusion de douze genres (Balsamocarpon, Cordeauxia, Guilandina, Haematoxylum, Hoffmanseggia, Lophocarpinia, Mezoneuron, Pomaria, Pterolobium, Stenodrepanum, Stuhlmannia, Zuccagnia) et en abolit deux (Stahlia et Poincianella). Elle propose aussi de réinstaurer deux genres (Biancaea et Denisophytum), de reconnaître cinq nouveaux genres (Arquita, Gelrebia, Hererolandia, Hultholia et Paubrasilia), et d’amender la description de sept genres (Caesalpinia, Cenostigma, Coulteria, Erythrostemon, Libidibia, Moullava, Tara). Les résultats indiquent qu’il y aurait possiblement aussi une 27e lignée qui correspondrait au genre Ticanto, mais un échantillonage taxonomique plus important serait nécéssaire pour éclaircir ce problème. Les espèces du groupe Caesalpinia ont une répartition pantropicale qui correspond presque parfaitement aux aires du biome succulent, mais se retrouvent aussi dans les déserts, les prairies, les savanes et les forêts tropicales humides. À l’échelle planétaire, le biome succulent consiste en une série d’habitats arides ou semi-arides hautement fragmentés et caractérisés par l’absence de feu, et abrite souvent des espèces végétales grasses, comme les Cactacées dans les néo-tropiques et les Euphorbiacées en Afrique. L’histoire biogéographique du groupe Caesalpinia a été reconstruite afin de mieux comprendre l’évolution de la flore au sein de ce biome succulent. Ce portrait biogéographique a été obtenu grâce à des analyses de datations moléculaires et des changements de taux de diversification, à une reconstruction des aires ancestrales utilisant le modèle de dispersion-extinction-cladogenèse, et à la reconstruction de l’évolution des biomes et du port des plantes sur la phylogénie du groupe Caesalpinia. Ces analyses démontrent que les disjonctions trans-continentales entre espèces sœurs qui appartiennent au même biome sont plus fréquentes que le nombre total de changements de biomes à travers la phylogénie, suggérant qu’il y a une forte conservation de niches, et qu’il est plus facile de bouger que de changer et d’évoluer au sein d’un biome différent. Par ailleurs, contrairement à nos hypothèses initiales, aucun changement de taux de diversification n’est détecté dans la phylogénie, même lorsque les espèces évoluent dans des biomes différents ou qu’il y a changement de port de la plante, et qu’elle se transforme, par exemple, en liane ou herbacée. Nous suggérons que même lorsqu’ils habitent des biomes très différents, tels que les savanes ou les forêts tropicales humides, les membres du groupe Caesalpinia se retrouvent néanmoins dans des conditions écologiques locales qui rappellent celles du biome succulent. Finalement, bien que la diversité des espèces du biome succulent ne se compare pas à celle retrouvée dans les forêts tropicales humides, ce milieu se distingue par un haut taux d’espèces endémiques, réparties dans des aires disjointes. Cette diversité spécifique est probablement sous-estimée et mérite d’être évaluée attentivement, comme en témoigne la découverte de plusieurs nouvelles espèces d’arbres et arbustes de légumineuses dans la dernière décennie. Le dernier objectif de cette thèse consiste à examiner les limites au niveau spécifique du complexe C. trichocarpa, un arbuste des Andes ayant une population disjointe au Pérou qui représente potentiellement une nouvelle espèce. Des analyses morphologiques et moléculaires sur les populations présentes à travers les Andes permettent de conclure que les populations au Pérou représentent une nouvelle espèce, qui est génétiquement distincte et comporte des caractéristiques morphologiques subtiles permettant de la distinguer des populations retrouvées en Argentine et en Bolivie. Nous décrivons cette nouvelle espèce, Arquita grandiflora, dans le cadre d’une révision taxonomique du genre Arquita, un clade de cinq espèces retrouvées exclusivement dans les vallées andines. / Amongst the lineages of the Caesalpinioideae (in the family Leguminosae), one of the largest groups where phylogenetic relationships remains unclear is the Caesalpinia Group, a clade of ca. 200 species, currently considered to comprise between 14 and 21 genera. The taxonomic complexity of the Caesalpinia Group stems from persisting doubts on the generic delimitations within Caesalpinia sensu lato, a group of 150 species that are provisionally classified into eight genera. In order to establish a stable generic classification, phylogenetic analyses of five chloroplastic loci and the nuclear ribosomal ITS locus were carried out on a matrix containing an unprecedented taxonomic sampling of the Caesalpinia Group (~84% of species of this group included), with virtually all of the morphological variation and geographic distribution represented. These analyses allowed us to determine that several genera of the Caesalpinia Group, as currently defined, are polyphyletic or paraphyletic. We consider that there are 26 well-resolved clades that represent distinct genera, and a new generic classification system is proposed, which includes a key to genera, the description of the 26 genera and all species accepted within these groups. A total of twelve previously accepted genera are maintained in this classification (Balsamocarpon, Cordeauxia, Guilandina, Haematoxylum, Hoffmanseggia, Lophocarpinia, Mezoneuron, Pomaria, Pterolobium, Stenodrepanum, Stuhlmannia, and Zuccagnia), whereas two genea are abolished (Stahlia and Poincianella). In addition, two genera are re-instated (Biancaea and Denisophytum), five new genera are described, (Arquita, Gelrebia, Hererolandia, Hultholia and Paubrasilia), and the description of seven genera are emended (Caesalpinia, Cenostigma, Coulteria, Erythrostemon, Libidibia, Moullava, Tara). Our results also indicate that there could possible be a 27th lineage corresponding to the genus Ticanto, but an increased taxonomic sampling is needed to adequately address this issue. The Caesalpinia Group has a pantropical distribution that corresponds almost perfectly to the geographical distribution of the Succulent Biome, but are also found in deserts, grassland prairies, savannahs, and tropical rainforests. On a planetary scale, the Succulent Biome consists of a series of semi-arid to arid habitats that are highly fragmented, and which are characterised by the absence of fire, such as deserts and dry forests. This biome often harbours succulent plant taxa, such as the Cactaceae in the Neotropics and the Euphorbiaceae in Africa. The biogeographical history of the Caesalpinia Group was reconstructed in order to gain insight into the evolution of the flora within this Succulent biome. This biogeographical portrait of this group was reconstructed using molecular dating analysis, diversification rate shifts tests, the reconstruction of ancestral areas using the dispersal-extinction-cladogenesis model (DEC), as well as through ancestral character reconstruction of the biomes and habits. These analyses demonstrate that intercontinental disjunctions between sister species belonging to the same biome are more frequent than the total number of biome shifts across the phylogeny, suggesting that there is a strong conservation of niches, and that it is easier to move than to switch to and evolve in a different biome. Furthermore, contrary to our initial hypothesis, no changes in diversification rates were detected in our phylogenies, even when species switched biomes or evolved a different plant habit, e.g. becoming lianas or herbaceous perennials. We suggest that even when members of the Caesalpinia Group inhabit different biomes, such as savannahs or tropical rainforests, they are still tracking local ecological conditions that are typical of the Succulent biome. Finally, while total plant species diversity in the Succulent Biome does not compare to the diversity found in tropical rainforests, this biome distinguishes itself by a high number of endemic species, distributed in disjunct patches across the world. This species diversity is probably under-estimated and needs to be carefully re-evaluated, as shown in several recent descriptions of new tree and shrub species from the Succulent biome, all published in the last decade. The last objective of this thesis is to examine the species limits in Caesalpinia trichocarpa, a shrub from the Andes that has a disjunct population in Peru, which potentially represents a new species. Morphological and molecular analyses of populations occurring across the Andes, including Bolivia and Argentina, allow us to conclude that the populations in Peru represent a new species, which is genetically distinct and has subtle morphological characteristics that allow it to be distinguished from populations found in Argentina and Bolivia. We describe this news species, Arquita grandiflora, in a taxonomic revision of the genus Arquita, a clade of five species found exclusively in Andean valleys.

Les plantes n'exploitent pas seules les nutriments du sol, mais dépendent de champignons avec lesquels elles forment des symbioses mycorhiziennes dans leurs racines. C'est en particulier vrai pour les 25 000 espèces d'orchidées actuelles qui dépendent toutes de champignons mycorhiziens pour accomplir leur cycle de vie. Elles produisent des graines microscopiques qui n'ont pas les ressources nutritives pour germer, mais qui dépendent de la présence de partenaires adéquats pour nourrir l'embryon (hétérotrophie) jusqu'à l'apparition des feuilles (autotrophie). Les mycorhiziens restent présents dans les racines des adultes où ils contribuent à la nutrition, ce qui permet d'étudier plus facilement la diversité des symbiotes à l'aide des outils génétiques. Conscients des biais des études en faveur des régions tempérées, nous avons étudié la diversité des mycorhiziens d'orchidées tropicales à La Réunion. Nous avons montré que (1) les orchidées tropicales ont des partenaires semblables aux orchidées tempérées et méditerranéennes (Sebacinales, Ceratobasidiaceae et surtout Tulasnellaceae), et que ces taxons de champignons sont largement représentés dans différents biomes et dans différentes plantes hôtes. Nous avons aussi démontré pour la première fois que (2) les orchidées épiphytes (dont les associations étaient peu connues) ont des cortèges mycorhiziens différents de ceux des orchidées terrestres dans les communautés tropicales. De plus, en développant une approche à l'échelle de réseaux d'interactions (78 espèces de La Réunion), nous avons montré que (3) les espèces tropicales ont tendance à être généralistes et que (4) le réseau mycorhizien des orchidées montre des propriétés semblables à celles des réseaux d'interactions mutualistes (nestedness et asymétrie d'interaction), alors que la nature mutualiste de cette symbiose mycorhiziennes fait débat. Dans un second volet de la thèse, nous avons étudié les partenaires des orchidées non chlorophylliennes (mycohétérotrophes) tropicales. Nous avons montré que (5) les espèces tropicales peuvent s'associer à des champignons saprophytes qui les nourrissent en carbone issu de la décomposition de la litière dans les forêts tropicales humides et que (6) les modèles tropicaux (en n'étant pas spécifiques) remettent en question les idées reçues sur la mycohétérotrophie des plantes. Nous avons confirmé que (7) la mycohétérotrophie dérive d'un régime nutritionnel intermédiaire (mixotrophie) mis en place dans des lignées chlorophylliennes. Dans un dernier volet de la thèse, nous avons posé la question du déterminisme phylogénétique des associations orchidées-champignons. En analysant la force du signal dans les phylogénies des deux partenaires, nous avons vérifié que (8) les associations mycorhiziennes sont peu conservées à l'échelle supra-générique dans la phylogénie des orchidées, et qu'elles (9) peuvent être maintenues à une échelle plus récente (cas de certains clades d'angraecoïdes). Ces résultats soulignent l'empreinte relative des processus écologiques et évolutifs sur les patrons d'associations actuels, et remettent en question l'idée qu'un processus de coévolution pourrait guider le système. / Plants generally do not exploit soil nutrients themselves, but they depend upon mycorrhizal symbioses with root-associating fungi. This is the case for the current 25,000 orchid species that depend on the development of a mycorrhizal association to germinate and establish. They produce minute seeds lacking nutritional ressources required to germinate, so that they depend on the presence of suitable fungal partners to obtain carbon (heterotrophy) until the development of leaves (autotrophy). Mycorrhizal fungi remain present in the roots of adult plants where they contribute to the plant nutrition, which makes the molecular identification of fungal partners easier. Given the fact that most studies have been conducted in temperate regions, we have studied the diversity of mycorrhizal fungi in tropical orchids of La Réunion. We have found that (i) tropical orchids have the same partners as temperate and mediterranean orchids (Sebacinales, Ceratobasidiaceae, and above all Tulasnellaceae), and that these fungi are widespread in biomes and host plants. We have also showed for the first time that (ii) epiphytic orchids-that have hardly been studied-have partners that differ from terrestrial orchids' in tropical plant communities. Moreover, by developing an interaction network approach (78 species of La Réunion), we have found that (iii) most tropical species are generalists and that (iv) the mycorrhizal network shows the same properties as the mutualistic interaction networks' (nestedness and interaction asymmetry), whereas the mutualistic nature of the orchid symbiosis is still a current issue. In the second part of our thesis, we have studied the fungal partners of achlorophyllous (i.e. mycoheterotrophic) tropical orchids. We have found that (v) tropical species often associate with saprophytic fungi that provide carbon extracted from decaying wood or leaves in tropical soils, and that (vi) tropical models, because of their lack of specificity, challenge the rule drawn from temperate models. We have also confirmed in tropical models that (vii) mycoheterotrophy evolved from mixotrophic ancestors (i.e. intermediate nutritional mode). In the last part of our thesis, we have dealt with the influence of orchid and fungal phylogenies in explaining the structure of the observed networks. By measuring the phylogenetic signals in both orchid and fungal phylogenies, we have checked that (viii) mycorrhizal interactions are not explained by the phylogenetic placements of either orchid genera or fungal taxa. However, we have noticed that (ix) a phylogenetic signal can occur in recent clades of orchid species (but not in fungal species). These results provide insights in the relative imprint of ecological and evolutionary processes on the current patterns of fungus-orchid associations, and challenge the idea that the coevolutionary process could drive the system.

A exploração de impacto reduzido (EIR) é um método florestal conhecido por ter suas atividades fundamentadas em maior planejamento e colheitas controladas de madeira para garantir maior potencial de recuperação em florestas exploradas, sendo um critério essencial para o desenvolvimento sustentável. No entanto, a extração ilegal de madeira e outras práticas insustentáveis de manejo na Amazônia brasileira continuam aumentando em regiões tropicais e são responsáveis pela diminuição da disponibilidade de madeira, criando uma luta cada vez maior para garantir um rendimento sucessivo de espécies exploradas em ciclos de corte consecutivos. Para superar esse problema, investigamos o padrão de crescimento e o valor das espécies florestais manejadas, a fim de dar subsídio à futuras adequações na legislação aplicada ao manejo e garantir a sustentabilidade florestal. Além disso, buscamos conhecer quais fatores bióticos e abióticos podem influenciar o crescimento, mortalidade e recrutamento da floresta após a exploração, a fim de propor tratamentos silviculturais que acelerem a recuperação dessa floresta para o próximo ciclo de corte. Determinamos também as curvas de crescimento das espécies madeireiras e sua valorização econômica com o passar dos anos, bem como analisamos se a gestão adotada atualmente garante a sustentabilidade florestal no futuro. Essa pesquisa ocorreu na Amazônia Oriental, no Brasil, em uma floresta que foi explorada por EIR e EC. A tese consiste em cinco capítulos: a introdução geral, três capítulos de pesquisa e uma síntese com considerações finais dos estudos. No segundo capítulo, os resultados afirmaram que o crescimento da floresta é maior após o uso da EIR, porém fatores de condição das árvores e vizinhança também podem influenciar o crescimento da floresta e de grupos funcionais. Dessa forma, o aumento da quantidade de lianas, danos na copa e competição unilateral por área basal teve efeito negativo no crescimento florestal. Além disso, o aumento do nível de luz e competição multilateral por densidade pode aumentar as taxas de crescimento das árvores. Os fatores de condição das árvores e vizinhança afetam de maneira diferente os grupos funcionais. Descobrimos também que houve aumento significativo das taxas de crescimento após a colheita florestal, mostrando que as espécies aproveitam o ambiente com muita luz para crescer. No terceiro capítulo, os resultados afirmam que as técnicas de exploração florestal influenciam a mortalidade das árvores, sendo a exploração convencional responsável por maior probabilidade de mortalidade após a colheita florestal; as árvores com nível alto de lianas têm maior probabilidade de mortalidade; as árvores com danos na copa têm maior chance de mortalidade; as maiores árvores (DAP maior) são mais suscetíveis à mortalidade. No quarto capítulo, foi observado que o incremento em diâmetro e área basal, para a maioria das espécies, aumenta com o uso de técnicas de baixo impacto na exploração. As espécies têm diminuição do incremento em diâmetro devido a influência de El Niño. O crescimento de espécies como Dipteryx odorata (Aubl.) Willd., Manilkara bidentata (A.DC.) A.Chev., Manilkara elata (Allemão ex Miq.) Monach. e Handroanthus serratifilius (Vahl) S.Grose é muito lento e a alta intensidade de corte na exploração pode diminuir ainda mais a velocidade de crescimento e recuperação dessas espécies. As menores árvores apresentaram menor crescimento e as maiores árvores apresentaram oscilação das taxas de crescimento logo após a exploração. As espécies madeireiras mais valorizadas são as madeiras nobres de alta densidade, porém como elas não têm a sustentabilidade garantida pelas atividades de exploração, com o passar do tempo são substituídas por espécies de baixa densidade. Esse estudo apresenta a interface entre a ciência do manejo, silvicultura de espécies tropicais e sua prática. Dessa forma, auxilia no aperfeiçoamento das leis e normas que regem o manejo e no desenvolvimento de tratamentos silviculturais específicos em florestas tropicais. Nossos resultados mostram como é possível melhorar as técnicas de exploração de madeira, diminuir a competição, os danos florestais e otimizar a recuperação florestal visando alcançar, num futuro próximo, o manejo florestal sustentável. Esse estudo pode ser utilizado como subsídio à silvicultura de espécies e ações de manejo em diferentes ecossistemas florestais por profissionais do manejo, tomadores de decisão e cientistas, para que a ciência e o setor produtivo possam avançar. / Reduced impact logging (RIL) is a well known forestry method that requires extensive planning and controlled timber harvesting to ensure a greater recovery potential for exploited forests, an essential criteria for sustainable development. However, in the Brazilian Amazon, illegal logging and other unsustainable forest management practices continue to increase in tropical regions and are responsible for decreasing the availability of timber, creating an ever-increasing struggle to guarantee successive yields of timber species in consecutive cutting cycles. To overcome this problem, we investigated the growth pattern and value of managed forest timber species to support future legislation amendments applied to the management and guarantee of forest sustainability in Amazonian Brazil. We examined biotic and abiotic factors that may influence forest growth, mortality, and recruitment after exploration, which gave indication to potential silvicultural treatments that can accelerate forest recovery in succeeding cutting cycles. We also determined timber species growth curves and estimated their financial increase potential overtime as well as analyze whether the management practices currently adopted guarantees forest sustainability in the future. This research took place in Eastern Amazonia, Brazil in a forest that had been harvested using RIL and CL (Conventional logging) techniques. This thesis consists of five chapters: the general introduction, three research chapters and a concluding chapter synthsizing the major findings from the study. In the second chapter, results confirm forest growth to be higher after implementing RIL, but factors related to tree and neighborhood condition can influence forest growth and functional groups. Thus, an increased amount of vines, crown damage and unilateral competition by basal area had a negative effect on forest growth. In addition, increasing light levels and multilateral competition may increase rates of tree growth. Furthermore, factors of tree condition and neighborhood seemed to affect the functional groups differently. We also found there was a significant increase in growth rates after harvesting, indicating that species take advantage of the greater availability of light within their environment. In the third chapter, the results affirm that the techniques of forest logging influence the mortality of the trees, being the conventional exploitation responsible for a greater probability of mortality after the forest harvest; trees with high lianas have greater likelihood of mortality; trees with crown damage have higher chance of mortality; the largest trees (DBH larger) are more susceptible to mortality. In the fourth chapter, it was observed that most species diameter and basal areas increased with the use of low impact logging techniques. Decreased in species diameter was mainly attributed to the influence of El Niño events. The growth of species such as Dipteryx odorata (Aubl.) Willd., Manilkara bidentata (A.DC.) A.Chev., Manilkara elata (Allemão ex Miq.) Monach. and Handroanthus serratifilius (Vahl) S.Grose are generally very slow growing and high intensity logging may the rate of growth and recovery of these species even more. The smallest trees recorded presented lower rates of growth compared to larger trees which presented an growth rates that oscillated soon after exploitation. The most valued timber species are those of high density, but as they do not have the sustainability guaranteed by exploration activities, over time they are replaced by low density species. This study presents an interface between the science of forest management, forestry of tropical species and its practice. Therefore, it helps to improve the laws and regulations governing the management and development of specific silvicultural treatments in tropical forests. Our findings show how it is possible to improve logging techniques, reduce competition and forest damage and optimize forest recovery in order to achieve sustainable forest management in the near future. This study can be used as a subsidy to the forestry of species and management actions in different forest ecosystems by management professionals, decision makers and scientists, so that science and the productive sector can move forward.

In spite tropical forests are the most important terrestrial global carbon sinks due to carbon storage in aboveground biomass, it is also the primary target of deforestation. The conversion of Tropical forests into anthropogenic areas might disrupt biological flux and also lead to severe microclimatic changes at forest edges. These combined effects can trigger profound changes in plant composition through both high mortality of fragmentation-sensitive species and proliferation of disturbed-adapted species which will ultimately impacts carbon storage. Thus, our main objective in this study was understand the role of human-induced disturbances in modulate the dimension of biomass loss at tropical forests. We applied a systematic literature review searching for empirical evidences that edge effects can drive biomass loss in tropical forests (Chapter 2). Our findings highlighted the gap of knowledge about the pattern and process related to biomass loss in tropical forests. To strengthen this understanding, we formulated a conceptual model linking landscape structure and patch-level attributes to severity of edge effects affecting aboveground biomass. Our model hypothesizes that habitat amount, isolation, time since edge creation, and the synergism between edge distance, patch size, and matrix type are the main drivers of biomass loss in anthropogenic tropical forests. We thus used a large plant dataset (18 503 trees ≥ 10 cm dbh) from 146 sites distributed across four Mexican and four Brazilian rainforest regions to test our conceptual model predictions, specifically the influence of forest cover, site isolation, edge distance, patch size and type of matrix on biomass (Chapter 3). We observed that carbon-rich sites presented species that are typical of old-growth forests (shade-tolerant, large-seeded, zoocoric) contrasting to carbon-poor sites composed by disturbed-adapted species (pioneer occupying the understory). Large shade-tolerant trees (≥ 40 cm dbh) were impacted severely by the combination of forest loss and edge effects. Edge distance, patch size, and the amount of open-matrix strongly influence small shade-tolerant trees (≤ 20 cm dbh). Although our results do not fully corroborate the initial predictions of the conceptual model, they support the idea that landscape composition interact with patch structure and ultimately impacts biomass stocks in fragmented tropical forests. Finally, we further investigated if the disturbance level of the region influences plant-structure responses to forest loss (Chapter 4). Biomass, but not plant density, was affected by forest loss in regions with intermediate disturbance levels, i.e. regions showing a combination of moderate deforestation (20-40% of remaining forest cover) disturbed during the past 30-60 years, high defaunation but harboring relictual populations of large-mammals, and areas mostly composed by heterogeneous matrices. In general, our findings highlight that both landscape composition and patch structure are the main drivers of biomass loss in Neotropical forests, and that the landscape context must be considered to obtain more reliable estimations of carbon emissions due to forest degradation. Landscape planning (e.g. restoration of forest cover) should be included in conservation strategies in order to sustain carbon storage. Moreover, we advocate that conservation initiatives will be less costly and more effective if implemented in areas under intermediate disturbance levels / Apesar das florestas tropicais serem a mais importante fonte mundial de carbono da porção terrestre do globo devido ao armazenamento de carbono na biomassa acima do solo, elas são também o alvo primário do desmatamento. A conversão das florestas Tropicais em áreas antropogênicas pode interromper o fluxo biológico e também levar a severas mudanças microclimáticas na borda dos fragmentos. A combinação desses efeitos pode engatilhar profundas mudanças na composição da vegetação através tanto da mortalidade de espécies sensíveis à fragmentação como também pela proliferação de espécies adaptadas distúrbios, com impactos finais nos estoques de carbono. Assim, o maior objetivo desse estudo foi compreender o papel dos distúrbios induzidos pelo homem na modulação da dimensão da perda de biomassa em florestas Tropicais. Nós aplicamos uma revisão sistemática da literatura procurando por evidências empíricas de que o efeito de borda pode levar a perda de biomassa em florestas tropicais (Capítulo 2). Nossos resultados destacam a lacuna de conhecimento entre padrões e processos relacionados à perda de biomassa em florestas Tropicais. Para fortalecer esse conhecimento, nós formulamos um modelo conceitual conectando estrutura da paisagem e atributos na escala do fragmento à severidade do efeito de borda, e assim afetando a biomassa acima do solo. Nosso modelo hipotetiza que a quantidade de hábitat, o isolamento, o tempo desde a formação da borda e o sinergismo entre tamanho do fragmento, distância da borda e tipo de matriz são os principais condutores de perda de biomassa em florestas Tropicais antropogênicas. Utilizando um grande banco de dados (18 503 árvores ≥ 10 cm dap) provenientes de 146 locais distribuídos em quatro regiões de floresta úmida no México e quatro no Brasil, nós então testamos as predições do nosso modelo conceitual. Especificamente, a influência da cobertura florestal, isolamento, distância da borda, tamanho do fragmento e tipo de matriz sobre a biomassa (Capítulo 3). Nós observamos que áreas com muito carbono apresentaram espécies típicas de florestas maduras (tolerantes ao sombreamento, zoocóricas, com sementes grandes) contrastando com áreas com pouco carbono compostas por espécies adaptadas à distúrbio (pioneiras ocupando o sub-bosque). Árvores grandes tolerantes ao sombreamento (≥ 40 cm dap) foram impactadas severamente pela combinação de perda de cobertura florestal e efeitos de borda. Distância da borda, tamanho do fragmento e a extensão da área de matriz aberta influenciaram fortemente as árvores pequenas tolerantes a sombreamento (≤ 20 cm dap). Apesar dos nossos resultados não corroborarem completamente as predições iniciais do nosso modelo conceitual, eles dão suporte à ideia de que a composição da paisagem interage com a estrutura do fragmento com impactos finais nos estoques de biomassa em florestas Neotropicais. Por fim, nós investigamos se o nível de distúrbio da região pode influenciar nas respostas da estrutura da vegetação à perda de cobertura florestal. Biomassa, mas não a densidade de indivíduos, foi afetada pela perda de cobertura florestal em regiões com nível intermediário de distúrbio, i.e. regiões apresentando uma combinação de níveis moderados de desmatamento (20-40% de cobertura florestal remanescente) em que a perturbação ocorreu ao longo dos últimos 30-60 anos, com alto grau de defaunação mas ainda abrigando populações relictuais de grandes mamíferos e, em sua maioria, compostos por uma matriz heterogênea. Em geral, nossos resultados destacaram que tanto a composição da paisagem como a estrutura do fragmento são os principais condutores de perda de biomassa em florestas Neotropicais e que o contexto da paisagem deve ser considerado para se obter estimativas mais confiáveis de emissão de carbono devido à degradação florestal. O planejamento da paisagem (e.g. restauração da cobertura florestal) deve ser incluído em estratégias de conservação em ordem de sustentar o armazenamento de carbono. Além disso, nós defendemos que iniciativas de conservação serão menos custosas e mais efetivas se implementadas em áreas sob níveis intermediários de distúrbio

Para identificar a importância ecológica das matas ciliares é essencial conhecer a interação entre sua hidrologia e ciclagem de nutrientes. Isto se torna ainda mais crucial diante das crescentes transformações na paisagem causadas pelo homem, que têm promovido forte antropização destas formações florestais. O estudo foi conduzido em uma floresta ribeirinha sazonalmente alagada na região sudoeste da Amazônia entre os anos de 2005 e 2007. Foram medidas as principais vias hidrológicas: chuva, precipitação interna, escoamento pelo tronco, escoamento superficial, solução do solo e água subterrânea, além do rio Urupá. Em todas foram realizadas análises químicas para determinação das concentrações de C, N e macronutrientes (cátions/ânions). A mata ciliar apresenta solos ácidos, bem estruturados, pobres em nutrientes e com um eficiente mecanismo de retenção nas camadas superficiais, associado à distribuição da matéria orgânica, absorção por raízes finas ou retenção pelos complexos de troca do solo. Os estoques de nutrientes no solo estão dentro da faixa de valores observada em outros estudos na Amazônia, apresentando baixa fertilidade. A região estudada apresenta altos índices pluviométricos (em torno de 2125 mm), com um regime de sazonalidade bem definido (apresentando déficit hídrico entre maio e setembro). A partição da chuva na mata ciliar ocorre com 15% de interceptação pelo dossel e o restante sendo distribuído entre a precipitação interna (83%) e escoamento pelo tronco (2%). A lixiviação de nutrientes pelo dossel foi observada para a maioria dos elementos avaliados, excetuando Na+ e Cl-, confirmando o importante papel do dossel em suprir nutrientes para a mata ciliar. Este enriquecimento também é influenciado pela queima de biomassa durante a transição do período seco para o chuvoso. A contribuição do escoamento pelo tronco foi essencial, principalmente para NO3- e cátions básicos, evidenciando a importância da inclusão desta via hidrológica na rotina de amostragens em estudos de ciclagem de nutrientes em florestas. Os fluxos no solo foram maiores na camada superficial, principalmente em função da entrada da rica solução da precipitação interna, sendo sua contribuição extremamente alta para K+, Carbono Orgânico Dissolvido (COD), PO43-, NH4+ e SO42-. Alguns elementos apresentaram indícios de lixiviação durante os meses mais chuvosos, enquanto o Na+ apresentou lixiviação durante o ano inteiro, em função da natureza conservativa deste elemento. A retenção das bases observada no solo pode estar associada com a absorção pelas raízes, adsorção pelas fases minerais e orgânicas do solo ou ainda pela retenção de ânions, que também foi observada. A relação entre os íons e a descarga do rio Urupá gerou uma histerese em sentido horário, indicando uma importante contribuição do fluxo lateral (escoamento superficial), e evidenciando a importante conectividade entre a mata ciliar e o rio Urupá. A maioria dos elementos apresentou balanço positivo (Ca2+, K+, HCO3-, Cl-, SO42- e COD) ou próximo do equilíbrio (Mg2+, NH4+, NO3-, PO43-), com exceção do Na+. Estes resultados indicam que a floresta estudada apresenta um eficiente mecanismo de conservação dos nutrientes em seus solos, uma baixa contribuição da ciclagem geoquímica (intemperismo de rochas) e forte controle da atmosfera e dossel florestal caracterizando um ciclo relativamente fechado / To identify the ecological importance of riparian forests is crucial to evaluate the interactions between its hydrology and nutrient cycling. This becomes more important due to fast changes in landscape promoted by mankind, which has been causing strong anthropization of these forests. The present study was conducted on a seasonal flooded riparian forest in the Southwestern Amazonia between 2005-2007. Main hydrological flowpaths (rainfall, throughfall, stemflow, overland flow, soil solution, groundwater and the Urupá riverwater) were sampled and posteriorly analyzed for C, N and macronutrients (cations/anions). Riparian forest soils are acid, well structured, poor in nutrients and with an efficient retention mechanism at the surface layers, which is linked to organic matter distribution, fine roots absorption, or retention by soil exchange complexes. Soil nutrient stocks are within the range of values usually observed in other studies in the Amazon region, revealing low fertility. The studied region exhibit high annual rainfall (around 2125 mm), with a marked seasonality (drought stress from May to September) and rain partitioning in the riparian forest divided into 15% of canopy interception and the remaining distributed between throughfall (83%) and stemflow (2%). Nutrient leaching from the canopy was observed for most elements, except Na+ and Cl-, confirming the important role of the canopy in supplying nutrients to the riparian forest. This enrichment is also influenced by biomass burning during the transition between dry to wet season. Stemflow contribution was essential, especially for NO3- and base cations, showing the necessity to include this flowpath in routine sampling in nutrient cycling studies. The highest soil fluxes were observed at the surface layer as a result of enriched inputs from throughfall, especially for K+, Dissolved Organic Carbon (DOC), PO43-, NH4+ e SO42-. Some elements exhibited leaching during wetter months, whereas Na+ has leached throughout the year, as a function of the conservative nature of this element. Base retention in soils may be linked to root absorption, sorption by organic and mineral soil phases, or anions retention, which was also observed in this study. The relation between ions and Urupá river discharge exhibited a clockwise hysteresis, suggesting an important lateral flow (overland flow) contribution and the connectivity between the riparian forest and Urupá River. Most elements had positive budgets (Ca2+, K+, HCO3-, Cl-, SO42- e COD) or were close to neutral balance (Mg2+, NH4+, NO3-, PO43-), except Na+. The results point out efficient nutrient retention mechanisms in these soils, low contribution from geochemical cycling (rock weathering) and a strong control from the atmosphere and forest canopy, characterizing a relatively close nutrient cycling

Tree growth influences forest community dynamics and responses to environmental variations, but currently is not well understood. Tree growth in highly diverse wet tropical forests have been well studied and characterised compared to the species-poor dry tropical forests. Thus, it is not clear if growth rates and community dynamics of dry forests are similar to those of wet forests, given the longer dry season, greater rainfall variability, more open canopy and lower number of species in dry forests. This thesis focuses on identifying important factors that influence tree diameter growth rates in the dry tropical forest at Mudumalai, southern India, and also compares growth patterns at this dry forest with those at moister forests. The thesis thus contributes towards closing the gap in understanding of tree growth patterns across the tropics. An initial analysis involving matrix-based population projections of four common canopy species at Mudumalai showed that variations in diameter growth have the potential to drastically modify population trajectories of dominant species. Thus the main focus of this thesis is aimed at identifying the important intrinsic and extrinsic factors affecting growth in this dry forest, as this information could be useful for future management of the forest. The second important aim of the thesis was to find out if growth rates are influenced by different sets of factors in tropical dry versus moist forests. A large permanent 50ha plot vegetation monitoring plot was set up in 1988-89 in the Mudumalai dry deciduous forest, and was subsequently monitored annually by staff of the Centre for Ecological Sciences. Data used in this thesis represent a 12-year interval between 1988 and 2000. Girth measurements were obtained from all woody tree stems ≥1cm in diameter every four years during this 12 year interval, which provided three census intervals of diameter increment data on >13,000 trees. For the comparison between dry and moist deciduous forests, data were obtained from a similar large plot maintained and monitored at the Barro Colorado Island (BCI) in Panama. Influences of the intrinsic factors, tree size, individual identity, species identity and growth form, were examined using t-tests, Wilcoxon signed ranks tests, linear regressions, analysis of variance (ANOVA), principal components analysis (PCA) and cluster analysis. Among the intrinsic factors tested, species identity explained approximately 20% of growth rates at the community level, while tree diameter explained less of growth variation, and growth form had a minor influence on growth. Growth rates also were examined for variations across the three census intervals, and for relationships with rainfall and survival from fire. Statistical tests included t-tests, Wilcoxon and other non-parametric sign tests, logistic regression and ANOVA. Most species and individuals showed significant reductions of growth in the second census interval (1992-1996), and growth rates of most trees were positively related to rainfall. Growth rate variations generally were not related to survival from fire, and few species were capable of escaping fire mortality by fast growth. Spatial environmental influences were tested in the commonest fifteen species, using five habitat categories, local elevation, slope, aspect, and the biotic neighbourhood variables of local conspecific and heterospecific density. Statistical tests included analysis of covariance, multiple linear regression and redundancy analysis. The tests were quadrat-based or individual-based, and species' growth responses were tested at different levels of distance and spatial scale. Topographic features and habitat categories had ephemeral effects on species growth. Only the most dominant species, Lagerstroemia microcarpa, showed consistent conspecific neighbour density effects. Redundancy analysis using a subset of common species and environmental factors did not reveal common growth responses to spatial environmental factors. Comparison of factors influencing growth at Mudumalai versus at BCI using multiple factor ANOVA and multiple linear regressions showed a similar influence of temporal variation at the two sites, but stronger and more widespread influence of tree size (diameter) at BCI. The greater influence of tree size at BCI may be related to greater light limitation in this dense moist forest. Spatial environmental factors had weak influences at both plots. Species were less differentiated from each other at the more diverse BCI plot compared to the relatively species-poor Mudumalai plot, suggesting that species' growth niches may be weakly related to diversity across tropical forests. Overall the results showed that among the factors tested species identity and census intervals were the most important influences on diameter growth at the Mudumalai dry deciduous forest. Tree diameter was less important and less consistent in affecting growth at the Mudumalai dry forest, contrary to expectations based on moist tropical forests where this relationship has been established previously. When comparing Mudumalai and BCI, the relative importance of different factors was different at the two sites, and the most important difference was a dominant influence of light limitation at the wetter forest in Panama. In terms of management applications, this study showed that fires at Mudumalai might be an inescapable source of mortality for many vulnerable species, and improved fire management is crucial for long term survival of species in this dry forest. At a larger scale, light and other environmental variables were found to influence growth differently at Mudumalai compared to BCI. This suggests that location-specific responses may be important for projections of tree biomass and carbon sequestration, especially under future climatic change scenarios.

Human pressure on forest resources increased significantly during the past decades through land use and land use change, especially in the tropics where forest clearing is a major source of CO2 release in the atmosphere. Consequently, forests are the focus of international environmental policies and discussions aiming to reduce emissions from deforestation and forest degradation (i.e. REDD+). The capacity of participating countries to regularly provide accurate forests C stocks measurements at a national scale thus represents an important challenge to address. In dense forests, generally only the above ground biomass (AGB) is measured as it accounts for more than 50% of total C stocks. However, important gaps remain at each scale of measurement, i.e. from felled tree to regional mapping, with the resulting errors propagation through these different scales being probably the most concerning issue.<p><p>In the present work, we propose to address these issues by using a multi-scale approach in order to improve our global understanding of AGB variations in dense tropical forests of Central Africa. In particular, we studied (i) forest AGB prediction from remote-sensing textural analysis, (ii) the potential role of largest trees as predictor of the entire forest-stand AGB and (iii) intra- and inter-individual radial variation of wood specific gravity (WSG, i.e. oven-dry mass divided by its green volume) and its potential consequences on the estimation of the AGB of the tree. <p>First, we analyzed the potential use of textural analysis to predict AGB distribution based on very high spatial resolution satellite scenes. In particular, we used the Fast Fourier Transform Ordination (FOTO) method to predict AGB from heterogeneous forest stands of the Democratic Republic of the Congo (DRC). Here, based on 26 ground plots of 1-ha gathered from the field, plus a successful combination of Geoeye and Quickbird contrasted scenes, we were able to predict and to map AGB with a robust model (R² = 0.85; RMSE = 15%) based on textural gradients. <p>Secondly, the research of AGB indicators was focused on the dissection of the role played by largest trees. Here we found largest trees not only hold large share of forest carbon stock but they contain the print of most of forest-stand structure and diversity. Using a large dataset from western Cameroon to eastern DRC, we developed a non-linear model to predict forest carbon stock from the measurement of only a few large trees. We found the AGB of the 5 % largest stems allow to predict the AGB of the entire forest-stand yielding an R² of 0.87 at a regional scale. Focusing on largest trees species composition, we also showed only 5 % of species account for 50 % of total AGB.<p>In the end, we investigated inter- and intra-individual WSG variations. Despite recognized inter- and intra-specific variations along the radial axis, their ecological determinants and their consequences on trees aboveground biomass assessments remain understudied in tropical regions. To our knowledge, it has never been investigated in Africa. Using a 3-D X-Ray scanner, we studied the radial WSG variation of 14 canopy species of DRC tropical forests. Wood specific gravity variance along the radial profile was dominated by differences between species intercepts (~76%), followed by the differences between their slope (~11%) and between individual cores intercept (~10%). Residual variance was minimal (~3%). Interestingly, no differences were found in the comparison of mean WSG observed on the entire core and the mean WSG at 1-cm under the bark (intercept ~0; coefficient = 1.03). In addition, local values of WSG are strongly correlated with mean value in the global data base at species level. <p><p>I deeply believe these results favor the development of promising tools to map and to estimate accurately the AGB of tropical forest-stands. The information provided by largest trees on the entire forest-stand is particularly interesting both for developing new sampling strategies for carbon stocks monitoring and to characterize tropical forest-stand structure. In particular, our results should provide the opportunity to decrease current sampling cost while decreasing its main related uncertainties, and might also favor an increase of the current sampling coverage. <p> / Doctorat en Sciences agronomiques et ingénierie biologique / info:eu-repo/semantics/nonPublished