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A leucemia mielóide crônica (LMC) é uma doença mieloproliferativa clonal caracterizada pela presença do cromossomo Philadelphia e o oncogene BCR-ABL1. Este oncogene codifica a oncoproteína Bcr-Abl com atividade tirosina-quinase constitutiva. A proteína Bcr-Abl é responsável pela resistência das células leucêmicas a apoptose. Atualmente, os pacientes com LMC são tratados com os inibidores de tirosina-quinase - mesilato de imatinibe, dasatinibe e nilotinibe. Apesar de o tratamento ser eficiente, pacientes em fases avançadas e mesmo na fase crônica da doença, apresentam resistência à terapia. Desta forma, novos fármacos devem ser investigados para melhorar o tratamento da LMC. As L-aminoácido oxidases (LAAOs) têm sido descritas como substâncias citotóxicas e indutoras de apoptose. Assim, o principal objetivo do presente estudo foi investigar o potencial antitumoral da LAAO isolada da serpente Calloselasma rhodostoma (CR-LAAO) nas células Bcr-Abl positivas. Avaliou-se a citotoxicidade da CR-LAAO nas linhagens HL-60 (linhagem Bcr-Abl negativa), HL-60.Bcr-Abl, K562 e KCL22 (linhagens Bcr-Abl positivas) e nas células mononucleares (MNC) de sangue periférico de indivíduos saudáveis, na presença ou ausência da catalase. Para investigar os mecanismos da ação citotóxica da CR-LAAO, realizou-se os ensaios de indução de apoptose por meio da quantificação das percentagens de núcleos hipodiplóides e anexina V-FITC, nas linhagens celulares e nas células MNC de indivíduos saudáveis e pacientes com LMC. Avaliou-se também os níveis de expressão das caspases 3, 8 e 9, o potencial de membrana mitocondrial, danos no DNA e o efeito apoptótico da toxina combinada com os inibidores de tirosina-quinase nas linhagens Bcr-Abl positivas. Além disso, investigamos se a CR-LAAO foi capaz de modular a expressão dos apoptomiRs miR-15a, miR-16, miR-145, miR-26a, hsa-let-7d, miR-142-3p, miR-29c, miR-146a, miR-21, miR-130a e miR-130b, assim como das proteínas pro- e anti-apoptóticas Bak, Bax, Bid, Bim, A1, Bcl-2, c-Flip, Ciap-2 e Mcl-1 nas linhagens Bcr-Abl positivas. Nossos resultados mostraram que o efeito citotóxico da CR-LAAO foi mais potente nas linhagens Bcr-Abl positivas em relação às células MNC de indivíduos saudáveis, e está associado ao peróxido de hidrogênio produzido durante a reação enzimática da CR-LAAO. Demonstrou-se também que a CR-LAAO induziu apoptose nas linhagens Bcr-Abl postivas testadas e nas células MNC de pacientes com LMC na fase crônica da doença. Em todas as linhagens celulares detectou-se danos no DNA, perda do potencial de membrana e ativação das caspases 3, 8 e 9. A percentagem de apoptose aumentou quando as células HL-60.Bcr-Abl foram tratadas com a CR-LAAO combinada com os inibidores de tirosina-quinase. A CR-LAAO modulou a expressão dos apoptomiRs miR-15a, miR-16, miR-145, miR-26a, hsa-let-7d, miR-142-3p, miR-29c, miR-21, miR-130a e miR-130b e de possíveis proteínas alvos nas linhagens Bcr-Abl positivas. Sendo assim, os resultados obtidos sugerem que a CR-LAAO apresenta uma ação antitumoral capaz de destruir as células leucêmicas / Chronic myeloid leukemia (CML) is a clonal myeloproliferative disease characterized by the presence of Philadelphia chromosome and BCR-ABL1 oncogene. This oncogene encodes the Bcr-Abl tyrosine kinase (TK) which presents a constitutive activity. The Bcr-Abl is responsible for leukemic cells resistance to apoptosis. The CML patients are currently treated with tyrosine kinase inhibitors (TKI) - imatinib mesylate, dasatinib and nilotinib. Although TKI are efficient for CML treatment, patients in advanced phases and even in chronic phase of the disease present resistance to therapy. Thus, potential new drugs must be investigated to improve the CML treatment. The L-amino acid oxidases (LAAOs) have been described as cytotoxic and apoptosis-inducing substances. Here, we investigated the LAAO from Calloselasma rhodostoma (CR-LAAO) antitumoral potential against Bcr-Abl positive cells. We evaluated the CR-LAAO cytotoxic effect against HL-60 (Bcr-Abl negative cell line), HL-60.Bcr-Abl, K562, KCL22 (Bcr-Abl positive cell lines) and the peripheral blood mononuclear cells (PBMC) from healthy subjects, in the presence or absence of catalase. To investigate the mechanisms underlying the CR-LAAO cytotoxic action, we performed the apoptosis induction assays through the hypodiploid nuclei and annexin-V quantification in the cell lines and PBMC from healthy subjects and CML patients. We also evaluated the levels of caspases 3, 8 and 9 expression, the mitochondrial membrane potential, DNA damage and the apoptotic effect of CR-LAAO combined with TKI on Bcr-Abl positive cells. In addition we investigated if CR-LAAO was capable of modulating the apoptomiRs miR-15a, miR-16, miR-29c, hsa-let-7d, miR-145, miR-146a, miR-21, miR-130a, miR-130b, miR-142-3p and miR-26a, the pro- and anti-apoptotic proteins (Bak, Bax, Bid, Bim, A1, Bcl-2, c-Flip, Ciap-2 and Mcl-1 expression in HL-60, HL-60.Bcr-Abl, K562 and KCL22 cells. Our results showed that the CR-LAAO cytotoxic effect was more potent in Bcr-Abl positive cell lines than in PBMC from healthy subjects and it is linked to hydrogen peroxide produced during the enzymatic action of CR-LAAO. It was also demonstrated that CR-LAAO was capable of inducing apoptosis in Bcr-Abl positive cell lines and CML patient\'s cells in chronic phase of the disease. In all tested cell lines, the loss of mitochondrial membrane potential, DNA damage and caspases 3, 8 and 9 activation were detected. The apoptosis percentage was improved when HL-60.Bcr-Abl cells were treated with CR-LAAO combined with TKI. The CR-LAAO modulated the apoptomiRs miR-15a, miR-16, miR-145, miR-26a, hsa-let-7d, miR-142-3p, miR-29c, miR-21, miR-130a and miR-130b expression as well the predict target proteins levels on Bcr-Abl positive cells. Thus, our results suggest that CR-LAAO presents an antitumoral action capable of destroying the CML cells.

Chronic Myelogenous Leukemia (CML) is a blood cancer that arises when hematopoietic cells acquire an abnormal protein known as BCR-ABL. Current therapies for CML include drugs that inhibit BCR-ABL. However, these drugs only suppress the disease and do not cure it. One reason is that BCR-ABL drugs fail to kill the primitive population of CML cells, referred to as leukemia stem cells (LSCs), which are responsible for initiating and propagating CML. Since LSCs are not killed, the cancer is not cured and many affected patients eventually relapse. Recent studies suggest that LSCs are protected from current therapies by the bone marrow micro-environment where they reside. There, cytokine signaling molecules are present, which mediate processes that protect LSCs from BCR-ABL drugs. The stem cell factor (SCF) is one of these signaling molecules. It activates the receptor c-Kit located on the surface of LSCs, and this activation in turn allows proliferating LSCs to resist BCR-ABL drugs, even without prior exposure to these drugs, i.e., innate resistance is observed. In this thesis, the mechanism of this innate resistance is investigated, so that a suitable treatment strategy can be developed. To this end, a co-agent approach based on synthetic antibodies (sABs) is proposed to inhibit the receptor c-Kit, with the goal of disrupting its activation by the ligand SCF. This disruption should in turn block the SCF-mediated innate resistance, thus potentially restoring BCR-ABL drug apoptotic activity. The method for this disruption involves targeting the c-Kit structural susceptibility. Specifically, the sABs are designed via antibody phage display technology to target the D1–D2–D3 domains representing the SCF binding sites, hence preventing downstream pathway activation. The hypothesis is that, by blocking the SCF-mediated innate resistance, a suitable combination of such an sAB co-agent and a BCR-ABL drug should be conducive to suppressing LSCs, thereby providing a potential means to improve CML treatment. In addition, to assess the performance of the proposed treatment strategy, a set of in vitro tests is conducted, focusing on performance behaviors such as cell binding, cell death, and the progenitor inhibition. The experimental results support the hypothesis that the proposed combinatorial strategy is indeed a promising approach to mitigate the innate resistance, thus restoring BCR-ABL drug apoptotic activity.

Unter Verwendung eines mathematischen Hämatopoese-Modells werden verschiedene Fragen adressiert, die im Zusammenhang mit einer möglichen Optimierung der gegenwärtigen Therapie chronischer myeloischer Leukämie (CML) stehen. Es handelt sich um ein agentenbasiertes Modell, das heißt, jede Zelle wird als einzelnes Objekt repräsentiert und gemäß festgelegter Regeln im Computer simuliert. Es werden proliferative von ruhenden Stammzellen unterschieden, wobei sich der Proliferationszustand reversibel ändern kann. Das Modell basiert auf der Annahme, dass sich normale und maligne Stammzellen in einem Wettbewerb um gemeinsame Ressourcen befinden, wobei der CML-Klon einen kompetitiven Vorteil besitzt. Es ist ungeklärt, ob Tyrosinkinaseinhibitoren wie Imatinib (IM) in der Lage sind, die Erkrankung zu heilen. Es gibt Evidenz, dass residuale leukämische Stammzellen im Knochenmark persistieren, welche in einem Ruhezustand (G0-Phase des Zellzyklus) von IM nicht eradiziert werden können. Proliferativ aktive Zellen sind der IM-Wirkung hingegen ausgesetzt. Das Modell sagt voraus, unter welchen Bedingungen eine Kombinationsstrategie von IM mit stammzellaktivierenden Substanzen Synergieeffekte hervorbringen könnte. Ein verwandtes Problem ist die Frage, in welchen Fällen nach Reduktion der Tumorlast auf ein mittels hochsensitiver Messmethoden undetektierbares Niveau ein Therapieabbruch gerechtfertigt ist. Basierend auf dem dynamischen Modell wird in dieser Arbeit ein Prädiktor vorgeschlagen, der vorhersagt, ob ein Patient nach Abbruch der Therapie einen molekularen Rückfall zu erwarten hat. Zusätzlich wird approximativ ein modellunabhängiger Prädiktor angegeben, der die Vorhersage nur auf Basis klinisch messbarer Größen gestattet.

Introduction : Le traitement des cancers bronchiques non à petites cellules (CBNPC) EGFR mutés repose sur les inhibiteurs de tyrosine kinase (ITK) du récepteur de l’Epidermal Growth Factor (EGFR). Cependant tous les patients traités par ITK EGFR finissent par présenter une progression tumorale, du fait de mécanismes de résistance comme l’amplification du gène codant pour le récepteur tyrosine kinase MET. Il n’existe actuellement aucune donnée sur les modifications phénotypiques induites par l’activation de MET dans ce contexte. L’objectif de cette thèse est de déterminer si l’amplification de MET, lors de la résistance aux ITK EGFR dans les CBNPC EGFR mutés, confère aux cellules tumorales un phénotype plus agressif et modifie l’histoire naturelle de la maladie.Méthodes : Les capacités de prolifération, de croissance sans ancrage, de formation de sphéroïdes, de résistance à l’anoïkis et de migration ont été étudiées in vitro dans la lignée HCC827, dérivée d’un CBNPC EGFR muté, et dans sa lignée fille HCC827-GR6 (GR6) devenue résistante aux ITK EGFR via une amplification du gène MET. L’expression de la vimentine, de ZEB1, et de la E-cadherine a également été étudiée dans les deux lignées cellulaires afin d’évaluer l’impact de l’amplification de MET sur la transition épithélio-mésenchymateuse (TEM). In vivo la croissance tumorale et le potentiel métastatique ont respectivement été analysés dans des modèles murins de xénogreffe ectopique et d’injection intracardiaque. Enfin les données cliniques de patients issus de 15 centres avec un CBNPC EGFR muté métastatique, présentant une forte surexpression de MET en immunohistochimie (score 3+) ou une amplification de MET en FISH sur une re-biopsie réalisée après la progression sous ITK EGFR ont été analysées rétrospectivement. Résultats : In vitro, l’amplification de MET induisait une augmentation significative de la prolifération, de la croissance sans ancrage, de la formation de sphéroïdes, de la résistance à l’anoïkis et de la migration. En présence d’un inhibiteur de MET, le PHA-665752, ces différentes propriétés biologiques étaient réduites de façon significative dans les cellules GR6 porteuses de l’amplification de MET. Il était également mis en évidence dans les cellules GR6 une augmentation de l’expression de la vimentine et de ZEB1. In vivo, l’amplification de MET augmentait significativement la croissance tumorale et le potentiel métastatique. Un traitement par crizotinib, ITK ciblant MET, diminuait de façon significative le potentiel métastatique des cellules porteuses de l’amplification de MET. Enfin les patients atteints d’un CBNPC EGFR muté, porteur d’une amplification de MET à la résistance à l’ITK EGFR, présentaient une durée jusqu’à apparition de nouvelles métastases plus courte après progression sous ITK EGFR que les patients avec une forte surexpression de MET sans amplification génique. Conclusion L’amplification de MET dans un contexte de résistance aux ITK EGFR est associée à un phénotype tumoral plus agressif. Ces résultats plaident en faveur d’une utilisation précoce d’inhibiteurs de MET en association avec les ITK EGFR afin d’éviter l’émergence d’un clone tumoral résistant plus agressif. / Introduction: Treatment of Epidermal Growth Factor Receptor (EGFR) mutated non-small cell lung cancers (NSCLC) relies on EGFR tyrosine kinase inhibitors (TKI). However, all patients treated with EGFR TKI eventually present tumor progression, due to mechanisms of resistance such as the MET amplification. There is currently no data on phenotypic changes induced by MET activation in this context. The objective of this thesis is to determine whether the MET amplification during EGFR TKI resistance in the EGFR mutated NSCLC induces a more aggressive phenotype in tumor cells and alters the natural history of the disease.Methods: Proliferation, anchorage independent growth, spheroid formation, anoïkis resistance and migration were studied in vitro in the HCC827 cell line, derived from an EGFR mutated NSCLC, and in its daughter cell line HCC827-GR6 (GR6) which became resistant to EGFR TKI through MET amplification. The expression of vimentin, ZEB1, and E-cadherin was evaluated in these cellular models in order to investigate an epithelial to mesenchymal transition (EMT) process induced by the MET amplification. In vivo, the tumor growth and the metastatic potential were analyzed by subcutaneous xenograft and intracardiac injection in mouse models. Finally, the clinical data of patients from 15 centers with a metastatic EGFR mutated NSCLC, exhibiting high MET overexpression in immunohistochemistry (score 3+) or MET amplification assessed by FISH on a re-biopsy performed after TKI EGFR progression were analyzed retrospectively.Results: In vitro, the MET amplification induced a significant increase in proliferation, anchorage independent growth, spheroid formation, anoïkis resistance and migration. Treatment with PHA-665752, a MET TKI, significantly reduced these biological properties in the GR6 cells harboring the MET amplification. An increase in the expression of vimentin and ZEB1 was also observed in the GR6 cells. In vivo, the MET amplification significantly increased the tumor growth and the metastatic potential. Treatment with crizotinib, another MET TKI, significantly decreased the metastatic potential of cells carrying MET amplification. Finally, patients with an EGFR mutated NSCLC, displayed a time to new metastases after TKI EGFR progression shorter than patients with high MET overexpression without MET amplification.Conclusion: The MET amplification during EGFR TKI resistance is associated in EGFR muted NSCLC with a more aggressive tumor phenotype. These results argue for the early use of MET inhibitors in combination with EGFR TKIs to avoid the emergence of a more aggressive resistant tumor clone.

A leucemia mielóide crônica (LMC) é uma doença mieloproliferativa clonal caracterizada pela presença do cromossomo Philadelphia e o oncogene BCR-ABL1. Este oncogene codifica a oncoproteína Bcr-Abl com atividade tirosina-quinase constitutiva. A proteína Bcr-Abl é responsável pela resistência das células leucêmicas a apoptose. Atualmente, os pacientes com LMC são tratados com os inibidores de tirosina-quinase - mesilato de imatinibe, dasatinibe e nilotinibe. Apesar de o tratamento ser eficiente, pacientes em fases avançadas e mesmo na fase crônica da doença, apresentam resistência à terapia. Desta forma, novos fármacos devem ser investigados para melhorar o tratamento da LMC. As L-aminoácido oxidases (LAAOs) têm sido descritas como substâncias citotóxicas e indutoras de apoptose. Assim, o principal objetivo do presente estudo foi investigar o potencial antitumoral da LAAO isolada da serpente Calloselasma rhodostoma (CR-LAAO) nas células Bcr-Abl positivas. Avaliou-se a citotoxicidade da CR-LAAO nas linhagens HL-60 (linhagem Bcr-Abl negativa), HL-60.Bcr-Abl, K562 e KCL22 (linhagens Bcr-Abl positivas) e nas células mononucleares (MNC) de sangue periférico de indivíduos saudáveis, na presença ou ausência da catalase. Para investigar os mecanismos da ação citotóxica da CR-LAAO, realizou-se os ensaios de indução de apoptose por meio da quantificação das percentagens de núcleos hipodiplóides e anexina V-FITC, nas linhagens celulares e nas células MNC de indivíduos saudáveis e pacientes com LMC. Avaliou-se também os níveis de expressão das caspases 3, 8 e 9, o potencial de membrana mitocondrial, danos no DNA e o efeito apoptótico da toxina combinada com os inibidores de tirosina-quinase nas linhagens Bcr-Abl positivas. Além disso, investigamos se a CR-LAAO foi capaz de modular a expressão dos apoptomiRs miR-15a, miR-16, miR-145, miR-26a, hsa-let-7d, miR-142-3p, miR-29c, miR-146a, miR-21, miR-130a e miR-130b, assim como das proteínas pro- e anti-apoptóticas Bak, Bax, Bid, Bim, A1, Bcl-2, c-Flip, Ciap-2 e Mcl-1 nas linhagens Bcr-Abl positivas. Nossos resultados mostraram que o efeito citotóxico da CR-LAAO foi mais potente nas linhagens Bcr-Abl positivas em relação às células MNC de indivíduos saudáveis, e está associado ao peróxido de hidrogênio produzido durante a reação enzimática da CR-LAAO. Demonstrou-se também que a CR-LAAO induziu apoptose nas linhagens Bcr-Abl postivas testadas e nas células MNC de pacientes com LMC na fase crônica da doença. Em todas as linhagens celulares detectou-se danos no DNA, perda do potencial de membrana e ativação das caspases 3, 8 e 9. A percentagem de apoptose aumentou quando as células HL-60.Bcr-Abl foram tratadas com a CR-LAAO combinada com os inibidores de tirosina-quinase. A CR-LAAO modulou a expressão dos apoptomiRs miR-15a, miR-16, miR-145, miR-26a, hsa-let-7d, miR-142-3p, miR-29c, miR-21, miR-130a e miR-130b e de possíveis proteínas alvos nas linhagens Bcr-Abl positivas. Sendo assim, os resultados obtidos sugerem que a CR-LAAO apresenta uma ação antitumoral capaz de destruir as células leucêmicas / Chronic myeloid leukemia (CML) is a clonal myeloproliferative disease characterized by the presence of Philadelphia chromosome and BCR-ABL1 oncogene. This oncogene encodes the Bcr-Abl tyrosine kinase (TK) which presents a constitutive activity. The Bcr-Abl is responsible for leukemic cells resistance to apoptosis. The CML patients are currently treated with tyrosine kinase inhibitors (TKI) - imatinib mesylate, dasatinib and nilotinib. Although TKI are efficient for CML treatment, patients in advanced phases and even in chronic phase of the disease present resistance to therapy. Thus, potential new drugs must be investigated to improve the CML treatment. The L-amino acid oxidases (LAAOs) have been described as cytotoxic and apoptosis-inducing substances. Here, we investigated the LAAO from Calloselasma rhodostoma (CR-LAAO) antitumoral potential against Bcr-Abl positive cells. We evaluated the CR-LAAO cytotoxic effect against HL-60 (Bcr-Abl negative cell line), HL-60.Bcr-Abl, K562, KCL22 (Bcr-Abl positive cell lines) and the peripheral blood mononuclear cells (PBMC) from healthy subjects, in the presence or absence of catalase. To investigate the mechanisms underlying the CR-LAAO cytotoxic action, we performed the apoptosis induction assays through the hypodiploid nuclei and annexin-V quantification in the cell lines and PBMC from healthy subjects and CML patients. We also evaluated the levels of caspases 3, 8 and 9 expression, the mitochondrial membrane potential, DNA damage and the apoptotic effect of CR-LAAO combined with TKI on Bcr-Abl positive cells. In addition we investigated if CR-LAAO was capable of modulating the apoptomiRs miR-15a, miR-16, miR-29c, hsa-let-7d, miR-145, miR-146a, miR-21, miR-130a, miR-130b, miR-142-3p and miR-26a, the pro- and anti-apoptotic proteins (Bak, Bax, Bid, Bim, A1, Bcl-2, c-Flip, Ciap-2 and Mcl-1 expression in HL-60, HL-60.Bcr-Abl, K562 and KCL22 cells. Our results showed that the CR-LAAO cytotoxic effect was more potent in Bcr-Abl positive cell lines than in PBMC from healthy subjects and it is linked to hydrogen peroxide produced during the enzymatic action of CR-LAAO. It was also demonstrated that CR-LAAO was capable of inducing apoptosis in Bcr-Abl positive cell lines and CML patient\'s cells in chronic phase of the disease. In all tested cell lines, the loss of mitochondrial membrane potential, DNA damage and caspases 3, 8 and 9 activation were detected. The apoptosis percentage was improved when HL-60.Bcr-Abl cells were treated with CR-LAAO combined with TKI. The CR-LAAO modulated the apoptomiRs miR-15a, miR-16, miR-145, miR-26a, hsa-let-7d, miR-142-3p, miR-29c, miR-21, miR-130a and miR-130b expression as well the predict target proteins levels on Bcr-Abl positive cells. Thus, our results suggest that CR-LAAO presents an antitumoral action capable of destroying the CML cells.

Hintergrund Die chronische myeloische Leukämie (CML) ist eine myeloproliferative Er- krankung, die aufgrund ihres Modellcharakters unter der Behandlung mit Tyrosin-Kinase- Inhibitoren (TKI) gut für eine Beschreibung mittels computerbasierter Modelle geeignet ist. Grundlage für die Entstehung einer CML ist die Bildung eines Philadelphia-Chromosoms durch eine Translokation der Chromosomen 9 und 22. Es resultiert das Onkogen BCR- ABL1, welches für eine konstitutiv aktive Tyrosinkinase codiert. Diese führt zu ungeregelter Proliferation der betroffen Zellen und zur Verdrängung der gesunden Blutbildung. Das überaktivierte Protein kann durch TKIs gezielt gehemmt werden. Damit ist es möglich, die Tumorlast erheblich zu senken und das Fortschreiten der Erkrankung aufzuhalten. Aktuell werden in der klinischen Anwendung außerhalb von Studien TKIs für die gesamte Lebensdauer der Patienten eingesetzt. Absetzstudien zeigten, dass circa 50% der Patienten nach einer über zwei Jahren nicht nachweisbaren BCR-ABL1-Last nach Behandlungsstopp kein erneutes Anwachsen der Tumorlast aufwiesen. Die Anwendung von computergestützten Modellsimulationen hilft, Zugriff auf die klinisch nur schwer zu messenden leukämischen Stammzellen zu bekommen und darüber Vorhersagen über den weiteren Therapieverlauf zu treffen. Aufgabenstellung Im Rahmen der vorliegenden Arbeit sollen Möglichkeiten der Übertragung von Patientendaten auf das etablierte Modell nach Roeder und Loeffler (2002) verbessert werden. Die vom Modell vorhergesagten Stammzellkinetiken sollen abschließend auf Praxistauglichkeit geprüft werden. Material und Methoden Aufgrund der Vergleichbarkeit zu früheren Untersuchungen erfolgte die Auswahl von 51 Patienten des deutsches Armes der IRIS-Studie. Deren Therapieverläufe wurden analysiert und können über eine biphasische exponentielle (biexponentielle) bzw. über eine stückweise lineare Funktion beschreiben werden. Als Erweiterung der Arbeiten von Horn et al. (2013) wurden alle Parameter der biexponentiellen Funktion in die Entwicklung neuer Methoden einbezogen. Zusätzlich wurde untersucht, ob die Einbeziehung von zensierten Messpunkte die Form der biexponentiellen Funktion verändert. Basierend auf den Therapiedaten der IRIS-Patienten erfolgte die Ermittlung eines Para meterraumes für Eingangsparameter der Modellsimulation (Modellparameter), welcher in 270.400 individuelle Paramterkombinationen unterteilt wurde. Es erfolgten anschließend die Simulation und Auswertung nach der biexponentiellen Beschreibung. Auf Basis dieser erheblich größeren Datengrundlage konnten zwei neue Verfahren der Modellparameteridentifikation für individuelle Patienten entwickelt werden. Einerseits wurde in Anlehnung an die Arbeit von Horn et al. (2013) ein Verfahren unter Nutzung der Regression vorgestellt. Andererseits konnte über den Vergleich der Abstände zwischen simulierten und realen Therapieverläufen eine Suche (lookup-table) etabliert werden. Die Berechnung des Abstandes zwischen Therapieverläufen ermöglicht gleichzeitig den Vergleich der verschiedenen Verfahren und damit eine Aussage über deren Anpassungsgüte. Zum Schluss wurde beispielhaft für einen Patienten das Verfahren der lookup-table angewendet und die resultierende Stammzellkinetik weiter analysiert. Ergebnisse Einführend erfolgte die Analyse der resultierenden biexponentiellen Funktion mit und ohne Einbeziehung von Messunsicherheiten. Es zeigte sich, dass der Verlauf dieser Funktion besonders in Bereichen, die von einbezogenen Messunsicherheiten betroffen sind, abweichend ist. Die Beschreibung des Langzeitverlaufs erfolgt jedoch annähernd gleich. Anschließend erfolgte die Validierung der Größe des vorsimulierten Datenpool anhand eines Vergleichs der statistischen Parameter von Patienten und Simulationen. Dieser zeigte sich dabei für die weiteren Untersuchungen geeignet. Die Nutzung der lookup-table zur Identifikation der am besten zu einem Patienten passenden Therapiesimulation ist überlegen sowohl gegenüber von der Horn et al. (2013) beschriebenen als auch in dieser Arbeit neu entwickelten Regressionsverfahren. Diese ergeben deutliche Abweichungen zwischen Patientendaten und Simulation. Eine Analyse des vorhergesagten Therapieverlaufes im Stammzellkompartiment ergibt jedoch, dass ähnliche Therapieverläufe im peripheren Blut durch stark unterschiedliche Stammzellkonfigurationen beschrieben werden können. Es resultiert eine starke Streuung der vorhergesagten Zeitpunkte eines möglichen Therapieendes. Schlussfolgerungen Die Nutzung der lookup-table zu Identifikation einer passenden Therapiesimulation ist hoch effektiv und anderen Verfahren, die auf Regression basieren, überlegen. Die etablierte Computersimulation nach Roeder und Loeffler (2002) bietet Zugriff auf die Therapie in der Ebene der Stammzellen. Die in weiteren Analysen gezeigten Streuungen der vorhergesagten Therapieverläufe im Stammzellkompartiment lassen den Schluss zu, dass Methoden zur Eingrenzung der Stammzellverläufe entwickelt werden müssen, um die Vorhersagen klinisch nutzbar zu machen. Weiterhin muss anhand von Messungen an Knochenmarkproben von realen Patienten geprüft werden, ob die von der Simulation postulierten Verläufe der Tumorlast im Stammzellkompartiment der realen Behandlung entsprechen. Ausblick Die in aktuellen Arbeiten beschriebene Rolle des Immunsystems im Therapieverlauf der CML (Saussele et al. 2016; Clapp et al. 2016) sollte in eine Verbesserung des Stammzellmodells nach Roeder und Loeffler (2002) einfließen. Weiterhin kann die Validierung der im Rahmen der Individualmedizin zu treffenden Absetzvorhersagen letztendlich nur über klinische Absetzuntersuchungen ermöglicht werden. / Background Chronic myeloic leukaemia (CML) is a myeloproliferative disease, which is well suited for modelling approaches. It is characterized by the oncogenic BCR-ABL1 fusion gene originating from an inverse translocation of the chromosomes 9 and 22 leading to the Philadelphia chromosome. The result is a constitutively activated tyrosine-kinase. This is followed by an extensive proliferation of leukaemic stem cells leading to a displacement of normal haematopoesis. The molecular specificity of CML forms the basis of a highly efficient, targeted therapy by tyrosine kinase inhibitors (TKIs). TKIs can decrease the tumour burden and slow down or eventually stop progressing of the disease. Currently, in clinical applications drugs are administered for the remaining life span. Interestingly, in recent treatment cessation trials patients were stopped after two years of non-detectable tumour burden and about 50% remained without relapse. The application of computer-based modelling helps to gain access to stem cell counts being difficult to measure clinically. This forms the basis for predictions of long-term therapy outcomes. Aim of this work This work aims on identifying a suitable algorithm to efficiently identify model simulations that optimally decribe individual patient kinetics. Furthermore, the clinical usability of the new methods was investigated. Material and methods The analysed group of patients was chosen out of the German cohort of the IRIS trial to ensure comparability to former investigations. It consists of 51 individuals. The course of leukaemic burden , i. e. leukaemic vs. non-leukaemic cells on a single patient level can be described as a biphasic exponential (bi-exponential) or a piecewise linear function. As an extension to former methods described by Horn et al. (2013) all parameters are included into further method development. Additionally, an investigation was conducted whether censored data points change the functional behaviour of a bi-exponential fit based on patients’ data. According to therapy data of all patients an input parameter space for the model simulation was delimited, such that all observed patient kinetics can be mimicked by the model. This parameter space was uniformly divided into 270.400 discrete parameter combinations. The therapy simulation of each combination was conducted and described by a bi-exponential function likewise to the patients’ fit. With the help of these huge variety of in silico therapies two new methods of model parameter identification for individual patients were developed. The first one is an advanced approach based on a regression model proposed by Horn et al. (2013). The second one by comparing distances between the patients’ and the models’ bi-exponential functions (lookup table). The comparison of the distances between different therapy courses (either simulated or patients’ data) was also used to compare the quality of different methods. As an example, for one patient the stem cell kinetics from the model were analysed in more detail and checked for robustness. Such a strategy, which might build the basis for clinical applications. Results A comparison between the different bi-exponential functions with and without censored data points revealed differences especially in the area in which censoring was performed. However, for the long-term tumour burden censored data had no influence. Secondly, an investigation was performed showing the sufficiency of the pre-simulated therapy courses for the new methods, i. e. lookup-table and regression models. The lookup- table turns out to be superior to identify a therapy simulation for a unique patient, since the complexity of linear regression models lead to increased deviations between patients’ therapy courses and the simulations. Unfortunately, distinct stem cell configurations lead to similar therapy descriptions in peripheral blood, assuming the correctness of the model. As a result, the prediction of a safe treatment cessation is often widely spread. Conclusions The new developed lookup-table to identify model simulations suitable for an individual patient is highly effective and superior to other methods using regression models. The simulation of the TKI treatment using the agent-based model of Roeder und Loeffler (2002) gives easy access to therapy courses on the level of leukaemic stem cells. Unfortunately, the finding of a well fitting simulation within the peripheral blood is not enough to provide a point of safe treatment cessation, since different stem cell configurations can lead to similar therapy courses. Additionally, it is necessary to check which of the assumed therapy courses on the stem cell level is appropriate. This could be done by gathering more information from bone-marrow punctures during the course of treatment. Outlook Investigations of new data showed the important role of the immune system in CML treatment (Saussele et al. 2016; Clapp et al. 2016). This should be taken into account by improving the model of Roeder und Loeffler (2002). Additionally, data from cessation trials can be used to validate the model assumptions.

Non-small-cell lung cancer (NSCLC) accounts for 80–85% of all lung cancers and is associated with significant mortality. As epidermal-growth-factor receptor (EGFR) is over-expressed in 80-90% of NSCLC, its inhibition via EGFR-Tyrosine Kinase inhibitors (EGFR-TKIs) is a main therapeutic strategy. However, patients with mutations in KRAS are resistant to EGFR-TKIs. A study in mutant KRAS-driven lung cancer in transgenic mice showed that tumor growth was dependent on the activity of focal adhesion kinase (FAK). Therefore, we hypothesized that KRAS-mutant NSCLC will be sensitive to FAK-TKIs and, given known FAK-EGFR cross-talk, FAK inhibition will sensitize KRAS-mutant NSCLC to EGFR-TKIs. We performed cell viability assays of WT versus mutant KRAS NSCLC cell lines following treatment with FAK-TKI alone or in combination with a clinically relevant EGFR-TKI. We found that KRAS-mutant cells were more sensitive to FAK-TKI than KRAS-WT NSCLC. In addition, we found that the combination treatment including FAK and EGFR TKIs resulted in reduced tumor cell viability as compared to treatment with either drug alone. This enhanced anti-tumor response could be due to FAK-TKI’s ability to down-regulate EGFR downstream targets. Our preliminary data suggests that in KRAS-mutant cells the drug combination appears to more effectively inhibit Akt activity than single drug treatment alone. This suggests an enhanced ability to impair cell survival following treatment with the drug combination. We also found that treatment with FAK TKI in KRAS mutant NSCLC cells resulted in increased activation of EGFR which was due in part to modulation of EGFR recycling and production of endogenous EGFR ligands. Thus, the combination of FAK- and EGFR-TKIs may be more effective in KRAS mutant NSCLC as treatment with EGFR-TKI overcomes the unexpected ‘side effect’ of treatment with FAK-TKI, namely activation of the EGFR pathway by this drug. The findings of our study are novel and have uncovered previously unrecognized outcomes of FAK inhibition on EGFR activity. Moreover, our data support the notion that the combination of FAK- and EGFR-TKIs could be an effective treatment for KRAS mutant NSCLC patients.

La résistance à la chimiothérapie constitue un frein majeur à son efficacité. Notre équipe a récemment pu montrer que le masitinib, un nouvel inhibiteur de protéines tyrosine kinases, possède une activité de resensibilisation des cellules tumorales résistantes à la chimiothérapie lorsqu'il est combiné à certaines chimio-drogues. L'objectif des travaux de cette thèse est de déterminer les voies de signalisation, modulées par l'action du masitinib, qui sont impliquées dans la resensibilisation aux chimiothérapies et amélioration de l'activité anti-tumorale.Dans la première partie de la thèse, nous avons pu identifier la nucléoside kinase dCK (désoxycytidine kinase), protéine activatrice d'un grand nombre de chimiothérapies, comme nouvelle cible du masitinib. Cette première étude nous a permis de mettre en évidence un nouveau concept thérapeutique: le masitinib, un composé chimique de type inhibiteur de protéines tyrosine kinases, peut jouer en même temps le rôle d'activateur de nucléoside kinase.Nous avons pu mettre en évidence dans la deuxième partie de la thèse que le traitement combiné entre l'épi-drogue décitabine et le masitinib peut être plus efficace pour la réexpression de certains gènes non ou peu induits par la décitabine seule.En conclusion, ces travaux nous ont permis de mettre en évidence l'interaction entre un inhibiteur de protéine tyrosine kinases et une nucléoside kinase, dans un concept d'activation enzymatique qui pourra certainement servir de base pour l'élaboration de nouvelles petites molécules chimiques spécifiques de l'activation de dCK ou d'autres nucléosides kinases nécessaires à l'activation des drogues de chimiothérapie. / Resistance to chemotherapy is considered as one of the major blockers of its efficacy. Recently, our team demonstrated that masitinib, a new tyrosine kinases inhibitor, possesse a resensitization activity of cell lines resistant to chemotherapy when associated with chemodrugs.The aim of this work is to determine signaling pathways, modulated by masitinib action, that could explain the resensitization to chemotherapy and improvement of anti-tumoral activity.In the first part of this work, we identified the nucleoside kinase dCK (deoxycytidine kinase), a chemotherapy activating protein, as a new target of masitinib. In summary, this first part of the work allowed us to describe a new and never described concept: masitinib, a small molecule belonging to tyrosine kinases group, can also play a role as nucleoside kinase activator.We were able to demonstrate through the second part of the work that the combined treatment of the epidrug decitabine and masitinib can be more effective than decitabine treatment for the re-expression of some genes non or weakly induced by decitabine when used alone.In conclusion, These data allowed us to introduce an interaction between a tyrosine kinases inhibitor and a nucleoside kinase, as an enzymatic activation new concept. This could be used as a base for the design of new small chemical molecules specific for dCK or other nucleoside kinases essential for the activation of chemodrugs. This concept will obviously help to imagine and evaluate more potential therapeutic combinations of chemodrugs and small chemical molecules to overcome the resistance to chemotherapy dependent on nucleoside kinases.

Chronic myeloid leukaemia (CML) is characterised by the constitutively active tyrosine kinase BCR-ABL. Standard treatment with tyrosine kinase inhibitors (TKI) in the chronic phase (CP) of CML conveys excellent long-term prognosis but is associated with side effects and costs. Treatment free remission (TFR) is possible in a proportion of patients discontinuing treatment after obtaining deep treatment responses but it is not fully known how to select the right patients for stopping attempts. Treatment of accelerated phase (AP) and blast crisis (BC) is more complicated and the prognosis more dismal. In this thesis, we have studied factors of importance for outcome in CML patients with focus on immunological factors and clinical management. In a cohort of 32 newly diagnosed CP-CML patients, evidence of active immune escape mechanisms were found. These declined with the course of TKI treatment and at the same time, effector lymphocyte responses were elicited. These anti-leukaemia immune responses might help in the long-term control of CML. Multiple plasma protein markers were also measured with three multiplex platforms in a smaller cohort of patients (n=14). Inflammatory cytokines and other plasma proteins were affected by TKI treatment and multiplexing seems useful for finding potential biomarkers with biologic or prognostic significance in CML. Patients progressing to AP/BC were studied in a population-based material from the Swedish CML register. Approximately 4% of TKI-treated CP-CML patients transformed to AP/BC within 2 years of diagnosis. Monitoring of treatment responses was suboptimal in 1/3 of these patients and the median survival was 1.4 years after diagnosis of AP/BC. Thus, minimising the risk of disease progression through strict adherence to guidelines for monitoring and treatment is essential. In a cohort of patients (n=50) discontinuing TKI treatment within a large European trial, musculoskeletal pain was reported by 30% of patients, starting within 1- 6 weeks of TKI discontinuation and spontaneously resolving over time in most cases. Patients (n=56) were also evaluated with a multiplex platform with a total of 162 inflammation- and cancer-related plasma proteins. No predictive protein biomarkers for successful TKI discontinuation could be found. However, profound effects of TKI-treatment were seen and plasma proteomics could be useful for understanding effects of long-term TKI-treatment.