Made available in DSpace on 2014-06-11T19:27:25Z (GMT). No. of bitstreams: 0 Previous issue date: 2007-03-23Bitstream added on 2014-06-13T18:56:11Z : No. of bitstreams: 1 ramos_tz_me_arafcf.pdf: 394778 bytes, checksum: 49aab967f711a3d7e0d67d4dd6e703c4 (MD5) / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) / Universidade Estadual Paulista (UNESP) / A triagem de crianças para bacteriúria assintomática objetivando prevenir pielonefrite e danos renais é amplamente recomendada. Amostras de urina, colhidas sem contaminação, de 500 pré-escolares com idade entre 2 a 7 anos foram submetidas ao teste com cloridrato de trifeniltetrazólio (TTC) e a urocultura. Culturas quantitativas foram realizadas usando dois diferentes meios de cultura: ágar CLED e ágar MacConkey. As colônias foram contadas, após 18-24 horas de incubação à 35-37ºC. O achado de 105 ou mais UFC/mL do mesmo microrganismo foi considerado como positivo. Para realizar o teste com TTC, 4 mL da urina foram misturados com 1 mL da solução aquosa de TTC estéril à 1% e incubados à 35-37ºC por 4 horas. Uma segunda urocultura foi realizada para as crianças que apresentaram resultado positivo. A sensibilidade aos antimicrobianos foi determinada. Uma comparação entre a urocultura e o teste com TTC foi feita, para avaliação do teste. Um questionário foi aplicado para avaliar fatores predisponentes comportamentais e funcionais. A triagem para bacteriúria assintomática, em pré-escolares em Araraquara-SP-Brasil mostrou uma prevalência de 1,4%. Escherichia coli foi o microrganismo mais isolado e a resistência a tetraciclina foi significante. Os resultados mostram que o teste com TTC possui 91,3% de sensibilidade; 64,3% de especificidade; 15,5% de valor preditivo positivo e 99,0% de valor preditivo negativo. Esses valores mostram que este teste pode ser usado como metodologia de triagem. O fato de já ter desenvolvido ITU anteriormente; usar o papel de trás para frente na higienização anal; beber menos de 1L de água por dia; e usar roupa íntima apertada foram considerados possíveis fatores de risco para o desenvolvimento de bacteriúria assintomática. / Urinary tract infection (UTI) is the most commom of bacterial infections. Screening children for asymptomatic bacteriuria to prevent pyelonephritis and renal scarring is widely recommended. Urine samples, revealed without contamination, from 500 pre-school children aged 2 to 7 years were submited to the tryphenyl tetrazolium chloride (TTC) test and urine culture. Quantitative urine cultures was performed using two different agar types: CLED and MacConkey. Colonies were count after 18-24 hours of incubation at 35-37ºC. The finding of 105 or more CFU/mL of the same microorganism constituted a positive culture. To perform the TTC test, 4 mL of the urine were mixed with 1 mL of the TTC 1% aqueous sterile solution and incubated at 35-37ºC for 4 hours. We performed a second urine culture for all children with a positive result. Antimicrobial susceptibility was determined. A comparison between the quantitative culture and the TTC test were made, for the evaluation of the test. A questionnaire were used to assess predisposing behavioral and functional abnormalities. The screening survey for asymptomatic bacteriuria in pre-school children in Araraquara-SP-Brazil showed a prevalence of 1.4%. Escherichia coli was the commonest organism isolated and resistence to tetracycline was significant. The results show that the TTC test has sensitivity 91.3%, specificity 64.3%, positive predictive value 15.5% and negative predictive value 99.0%. This test can be use as a screening test. History of the urinary tract infection, inadequate hygiene, poor fluid intake and use of tigh-fitting underwear appear to be risk factors for asymptomatic bacteriuria.

Introdução: As Infecções no trato urinário (ITU) estão entre as doenças infecciosas mais comumente diagnosticadas e são responsáveis por uma grande proporção do consumo de agentes antimicrobianos, sendo a Escherichia coli o microorganismo mais freqüentemente envolvido. Os antimicrobianos utilizados no tratamento das ITU sofrem concentração no processo de eliminação, ocasionando altos níveis de antimicrobiano na urina. No entanto, os testes que avaliam a susceptibilidade aos antimicrobianos são baseados em concentrações séricas. Assim, é de interesse a padronização de um teste que utilize níveis urinários (discos de alta potência) dos antimicrobianos frente aos uropatógenos. Objetivo: padronizar teste de susceptibilidade aos antimicrobianos para E. coli de ITU, com concentrações de antimicrobianos atingidas na urina. Métodos: foram utilizados 204 isolados bacterianos resistentes a pelo menos um dos seguintes antimicrobianos: ampicilina, cefalotina, ciprofloxacino, gentamicina, sulfametoxazol-trimetoprima(cotrimoxazol) para os quais foi determinada a MIC através de diluição em agar. Através da análise das MIC obtidas e das concentrações que os antimicrobianos atingem na urina, foram estabelecidas as concentrações dos discos de alta concentração. As seguintes concentrações de disco foram utilizadas: ampicilina (500, 400, 300 μg), cefalotina (200, 100 μg) e ciprofloxacino (200, 150 μg). Resultados: a ampicilina apresentou MIC ≥ 512μg/mL para cerca de 50% dos isolados. Dos discos testados, o de 500 μg mostrou melhor coeficiente de correlação de Spearman (rs: -0,659) e foi escolhido para a determinação do ponto de corte através de curva ROC (receiver operating characteristic). Pela curva, um diâmetro de halo de 9 mm separaria as amostras resistentes (R) das susceptíveis (S) a altos níveis de ampicilina com 100% de sensibilidade e especificidade de 50%. A cefalotina apresentou MIC inferior a 256μg/mL para 78% dos isolados sendo que o “rs” para os discos de 100 e 200 μg foi o mesmo: -0,744. Pela curva ROC, halos de 17mm (disco de 200μg) e 13mm (disco de 100μg) discriminariam amostras R de S com 100% de sensibilidade e 96,9% de especificidade. O ciprofloxacino apresentou MIC ≤ 128 μg/mL para mais de 50% dos isolados, sendo que o “rs” foi melhor com o disco de 200μg (rs:-0,916). Um halo de 21mm separaria as amostras S e R com 100% de sensibilidade e 78,9% de especificidade. Para o cotrimoxazol, 95% das amostras se mostraram resistentes a altos níveis e os testes com disco de alta potência não foram realizados. Para a gentamicina o baixo nº de amostras (n=22) prejudicou a análise, mas cerca de 63% dos isolados seriam susceptíveis a altos níveis. Conclusão: O presente estudo demonstrou que o uso de discos de alta concentração pode ser útil para avaliar a susceptibilidade de isolados urinários. Isto tem importância em laboratórios clínicos onde, embora haja dificuldade na realização da MIC, testes de disco-difusão estão incorporados na rotina. / Introduction: The urinary tract infections (UTI) are among the most common infectious diseases and are responsible for a high antimicrobial usage. The Escherichia coli is the main microorganism involved in UTI. The antimicrobials used for treatment of UTI concentrate in the urinary tract and this leads to high levels of them in the urine. However, the susceptibility tests are based on the serum levels of the antimicrobials. Therefore, it is of interest to develop a test which correlates the urinary levels of antibiotics (discs with high levels) with the uropathogens. Objective: to propose a susceptibility test of E. coli from UTI using doses of the antimicrobials reached in the urine. Methods: a total of 204 clinical isolates of E.coli resistant, according to conventional antimicrobial susceptibility test to, at least, one of the following antimicrobials: ampicillin, cefalotin, ciprofloxacin, gentamicin and trimetoprima- sulfametoxazol. The MIC was determined by the agar dilution technique. According to the results of the MICs and the urinary levels of the antimicrobials it was possible to establish the concentration of the high potency discs. The following concentration of discs were used: ampicilina (500, 400, 300 μg), cefalotin (200, 100 μg) and ciprofloxacin (200, 150 μg). Results: ampicillin presented MIC ≥ 512μg/mL for around 50% of E. coli isolates. The disc containing 500 μg of ampicillin displayed the best coeficient of correlation (rs: -0,659) and it was chosen to establish diameter breakpoint according to the ROC curve. A diameter of 9 mm would discriminate high level ampicillin resistant isolates with 100% and 50% of sensitivity and specificity, respectively. Cefalotin presented MIC below 256 μg/mL for 78% of E. coli isolates. Its “rs” for discs containing 100 and 200μg was the same: - 0,744. According to the ROC curve zone diameters of 17mm (disk of 200μg) e 13mm (disk of 100μg) were able to discriminate isolates resistant with 100% and 96.9% of sensitivity and specificity, respectively. Ciprofloxacin presented MIC ≤ 128 μg/mL for more than 50% of isolates and the best “rs” was achieved with the 200μg (r:-0,916) disk. A zone diameter of 21mm would discriminate susceptible isolates with 100% and 78.9% of sensitivity and specificity. respectively. A total of 95% of E. coli isolates proved to be resistant to high levels of cotrimoxazole and, therefore, tests with high potency disks were not performed. Due to the small numbers of isolates resistant to gentamycin (n=22) we were not able to perform further analysis although 63% of E coli isolates proved to be susceptible to high levels of this antimicrobial. Conclusion: This study indicated that the susceptibility test with disks containing high levels of antimicrobials may be useful to evaluate the susceptibility of urinary tract isolates This may be of importance as the clinical laboratory may not be able to perform the MIC test for routine isolates.

Introdução: As Infecções no trato urinário (ITU) estão entre as doenças infecciosas mais comumente diagnosticadas e são responsáveis por uma grande proporção do consumo de agentes antimicrobianos, sendo a Escherichia coli o microorganismo mais freqüentemente envolvido. Os antimicrobianos utilizados no tratamento das ITU sofrem concentração no processo de eliminação, ocasionando altos níveis de antimicrobiano na urina. No entanto, os testes que avaliam a susceptibilidade aos antimicrobianos são baseados em concentrações séricas. Assim, é de interesse a padronização de um teste que utilize níveis urinários (discos de alta potência) dos antimicrobianos frente aos uropatógenos. Objetivo: padronizar teste de susceptibilidade aos antimicrobianos para E. coli de ITU, com concentrações de antimicrobianos atingidas na urina. Métodos: foram utilizados 204 isolados bacterianos resistentes a pelo menos um dos seguintes antimicrobianos: ampicilina, cefalotina, ciprofloxacino, gentamicina, sulfametoxazol-trimetoprima(cotrimoxazol) para os quais foi determinada a MIC através de diluição em agar. Através da análise das MIC obtidas e das concentrações que os antimicrobianos atingem na urina, foram estabelecidas as concentrações dos discos de alta concentração. As seguintes concentrações de disco foram utilizadas: ampicilina (500, 400, 300 μg), cefalotina (200, 100 μg) e ciprofloxacino (200, 150 μg). Resultados: a ampicilina apresentou MIC ≥ 512μg/mL para cerca de 50% dos isolados. Dos discos testados, o de 500 μg mostrou melhor coeficiente de correlação de Spearman (rs: -0,659) e foi escolhido para a determinação do ponto de corte através de curva ROC (receiver operating characteristic). Pela curva, um diâmetro de halo de 9 mm separaria as amostras resistentes (R) das susceptíveis (S) a altos níveis de ampicilina com 100% de sensibilidade e especificidade de 50%. A cefalotina apresentou MIC inferior a 256μg/mL para 78% dos isolados sendo que o “rs” para os discos de 100 e 200 μg foi o mesmo: -0,744. Pela curva ROC, halos de 17mm (disco de 200μg) e 13mm (disco de 100μg) discriminariam amostras R de S com 100% de sensibilidade e 96,9% de especificidade. O ciprofloxacino apresentou MIC ≤ 128 μg/mL para mais de 50% dos isolados, sendo que o “rs” foi melhor com o disco de 200μg (rs:-0,916). Um halo de 21mm separaria as amostras S e R com 100% de sensibilidade e 78,9% de especificidade. Para o cotrimoxazol, 95% das amostras se mostraram resistentes a altos níveis e os testes com disco de alta potência não foram realizados. Para a gentamicina o baixo nº de amostras (n=22) prejudicou a análise, mas cerca de 63% dos isolados seriam susceptíveis a altos níveis. Conclusão: O presente estudo demonstrou que o uso de discos de alta concentração pode ser útil para avaliar a susceptibilidade de isolados urinários. Isto tem importância em laboratórios clínicos onde, embora haja dificuldade na realização da MIC, testes de disco-difusão estão incorporados na rotina. / Introduction: The urinary tract infections (UTI) are among the most common infectious diseases and are responsible for a high antimicrobial usage. The Escherichia coli is the main microorganism involved in UTI. The antimicrobials used for treatment of UTI concentrate in the urinary tract and this leads to high levels of them in the urine. However, the susceptibility tests are based on the serum levels of the antimicrobials. Therefore, it is of interest to develop a test which correlates the urinary levels of antibiotics (discs with high levels) with the uropathogens. Objective: to propose a susceptibility test of E. coli from UTI using doses of the antimicrobials reached in the urine. Methods: a total of 204 clinical isolates of E.coli resistant, according to conventional antimicrobial susceptibility test to, at least, one of the following antimicrobials: ampicillin, cefalotin, ciprofloxacin, gentamicin and trimetoprima- sulfametoxazol. The MIC was determined by the agar dilution technique. According to the results of the MICs and the urinary levels of the antimicrobials it was possible to establish the concentration of the high potency discs. The following concentration of discs were used: ampicilina (500, 400, 300 μg), cefalotin (200, 100 μg) and ciprofloxacin (200, 150 μg). Results: ampicillin presented MIC ≥ 512μg/mL for around 50% of E. coli isolates. The disc containing 500 μg of ampicillin displayed the best coeficient of correlation (rs: -0,659) and it was chosen to establish diameter breakpoint according to the ROC curve. A diameter of 9 mm would discriminate high level ampicillin resistant isolates with 100% and 50% of sensitivity and specificity, respectively. Cefalotin presented MIC below 256 μg/mL for 78% of E. coli isolates. Its “rs” for discs containing 100 and 200μg was the same: - 0,744. According to the ROC curve zone diameters of 17mm (disk of 200μg) e 13mm (disk of 100μg) were able to discriminate isolates resistant with 100% and 96.9% of sensitivity and specificity, respectively. Ciprofloxacin presented MIC ≤ 128 μg/mL for more than 50% of isolates and the best “rs” was achieved with the 200μg (r:-0,916) disk. A zone diameter of 21mm would discriminate susceptible isolates with 100% and 78.9% of sensitivity and specificity. respectively. A total of 95% of E. coli isolates proved to be resistant to high levels of cotrimoxazole and, therefore, tests with high potency disks were not performed. Due to the small numbers of isolates resistant to gentamycin (n=22) we were not able to perform further analysis although 63% of E coli isolates proved to be susceptible to high levels of this antimicrobial. Conclusion: This study indicated that the susceptibility test with disks containing high levels of antimicrobials may be useful to evaluate the susceptibility of urinary tract isolates This may be of importance as the clinical laboratory may not be able to perform the MIC test for routine isolates.

Submitted by Biblioteca da Faculdade de Farmácia (bff@ndc.uff.br) on 2017-04-03T17:52:51Z No. of bitstreams: 1 Araujo, Fernanda Miranda de [Dissertação, 2011].pdf: 1770084 bytes, checksum: 02dc9fe25e679414ba90c97935473f41 (MD5) / Made available in DSpace on 2017-04-03T17:52:51Z (GMT). No. of bitstreams: 1 Araujo, Fernanda Miranda de [Dissertação, 2011].pdf: 1770084 bytes, checksum: 02dc9fe25e679414ba90c97935473f41 (MD5) / Objetivo. Descrever a prevalência de resistência a ciprofloxacino e analisar as variáveis potencialmente associadas a esta resistência em amostras de Escherichia coli isoladas de pacientes com câncer ginecológico e infecção do trato urinário (ITU). Métodos. Trata-se de uma série de casos de pacientes com ITU por E. coli assistidas no Hospital do Câncer II do Instituto Nacional do Câncer (INCA/HCII) de março de 2009 a fevereiro de 2010. Os casos foram detectados através de vigilância microbiológica no laboratório de bacteriologia clínica do INCA/HCII. As análises microbiológicas foram realizadas conforme recomendado pelo Clinical and Laboratory Standards Institute (CLSI). Os dados clínicos e epidemiológicos foram coletados através de revisão de prontuários. Para a avaliação das variáveis potencialmente associadas à resistência a ciprofloxacino foi feita análise multivariada por regressão logística. Resultados. Entre os 275 casos de ITU por E. coli em pacientes com câncer ginecológico incluídas no estudo, a prevalência de resistência das amostras a ciprofloxacino foi 31%. A prevalência de resistência das amostras a outros antimicrobianos como cefazolina, ceftazidima, fosfomicina, gentamicina e nitrofurantoína aumentou significativamente (p≤0,05) ao longo do período. Não foi detectada resistência a amicacina e carbapenemas. Duas amostras foram produtoras de b-lactamases de espectro ampliado (ESBL). As variáveis independentemente associadas à resistência a ciprofloxacino entre as amostras de E. coli foram: presença de nefrostomia (OR: 4,83; IC95%: 1,15-20,23; p: 0,031), internação (OR: 4,00; IC95%: 1,35-11,85; p: 0,012) e uso de fluoroquinolona (OR: 3,02; IC95%: 1,28-7,91; p: 0,015) nos 3 meses anteriores ao episódio de ITU. Conclusão. A resistência ao ciprofloxacino foi elevada. Os fatores de risco para esta resistência foram aqueles relacionados à manipulação de vias urinárias, sugerindo a possibilidade de transmissão cruzada de amostras resistentes a ciprofloxacino, e o uso prévio de fluoroquinolonas / Objective. To describe the prevalence of resistance to ciprofloxacin and analyze variables potentially associated with this resistance in samples of Escherichia coli isolated from patients with gynecological cancer and urinary tract infection (UTI). Methods. A case-series was conducted between March 2009 and February 2010 at the Cancer Hospital II part of the National Cancer Institute (INCA/HCII) with patients aged over 18 years with gynecological cancer presenting UTI caused by E. coli. Cases were detected through microbiological surveillance in the laboratory of clinical bacteriology in INCA/HCII. Microbiological analyses were performed as recommended by Clinical and Laboratory Standards Institute (CLSI). Clinical and epidemiological data were collected through charts review. For the evaluation of variables potentially associated with resistance to ciprofloxacin the multivariate analysis were performed by logistic regression. Results. Among 275 cases of UTI caused by E. coli in patients with gynecological cancer included in the study, the prevalence of samples resistant to ciprofloxacin was 31%. The prevalence of samples resistant to other antimicrobials such as cefazolin, ceftazidima, fosfomycin, gentamicin and nitrofurantoína increased significantly (p≤0,05) during the period. It was not detected resistance to amikacin and carbapenems. Two samples were producers of extended spectrum b-lactamase (ESBL). The variables independently associated with resistance to ciprofloxacin between samples of E. coli were: undergone nephrostomy (OR: 4.83; IC95%: 1.15-20.23; p: 0.031), hospitalization (OR: 4.00; IC95%: 1.35-11.85; p: 0.012) and use of fluoroquinolone (OR: 3.02; IC95%: 1.28- 7.91; p: 0.015) in the 3 months preceding the episode of UTI. Conclusion. Resistance to ciprofloxacin was high. Risk factors for this resistance were those related to urinary tract manipulation suggesting the possibility of cross transmission of samples resistant to ciprofloxacin, and previous use of fluoroquinolones

Abstract The aims of the work were to evaluate the comparability and repeatability of urodynamic studies and to examine whether such examinations are useful for predicting the recurrence of urinary tract infections or the presence of vesicoureteral reflux, to analyse the efficacy of treatments for vesicoureteral reflux (VUR), to validate a pre-established clinical decision rule for targeting voiding cystourethrograms efficiently in children and to investigate the occurrence of vesicoureteral reflux. Reports on urodynamic examinations performed on children were evaluated by analysing inter-observer and intra-observer agreement in their interpretations, and 116 children were followed up to examine whether such examinations can be used to predict the recurrence of urinary tract infections and the presence of vesicoureteral reflux. A meta-analysis of publications on treatments for vesicoureteral reflux was made to analyse their efficacy in children. A group of 406 children were examined to validate a pre-established clinical decision rule for managing vesicoureteral reflux in children after the first urinary tract infection and to investigate the occurrence of VUR in children. We found poor agreement among the observers in their urodynamic assessments. Neither the occurrence of VUR nor recurrent urinary tract infection could be predicted from the findings in urodynamic studies. The meta-analysis indicated no significant difference between conservative or operative treatment in terms of the recurrence of urinary tract infections, kidney growth or scarring. Our validation of the clinical decision rule showed that it had good specificity but very modest sensitivity in identifying children with dilating vesicoureteral reflux. The overall prevalence of vesicoureteral reflux was 35%, and its occurrence was similar in children without urinary tract infection. We claim that the occurrence of vesicoureteral reflux in children is higher than the figure of 1% suggested earlier. We could not predict the presence or absence of vesicoureteral reflux from the results of the urodynamic examinations, nor could we predict recurrent urinary tract infections from these findings. We suggest that it is not possible to predict VUR reliably, and that conservative treatment is sufficient for the majority of children with VUR. / Tiivistelmä Väitöskirjani tutkimussarjassa selvitimme lapsen virtsateissä tapahtuvan virtsan takaisinvirtauksen (vesikoureteraalinen refluksi, VUR) yleisyyttä ja yhteyttä lasten virtsatieinfektioihin, arvioimme aiemmin julkaistun tutkimusohjeen käyttökelpoisuutta lasten virtsateiden kuvantamispäätöstä tehtäessä ja teimme meta-analyysin virtsan takaisinvirtauksen hoitotapojen merkityksestä munuaisten kehitykselle ja toiminnalle. Selvitimme myös virtsarakon toiminnallisten tutkimusten arviointien toistettavuutta ja vertailtavuutta lastenkirurgien kesken sekä onko näillä tutkimuksilla mahdollista havaita onko lapsella VUR tai taipumusta uusiutuviin virtsatieinfektioihin. Tutkimassamme 406 lapsen aineistossa virtsan takaisinvirtausta löytyi 39 % :lla virtsatieinfektion sairastaneista lapsista ja 36 %:lla muita tulehduksia sairastaneista. Ero ei ollut tilastollisesti merkittävä ja esiintyvyys on huomattavasti suurempi kuin aiemmin on oletettu. Samassa aineistossa testasimme tutkimusohjetta jonka avulla voitaisi löytää lapset joilla on todennäköisesti VUR. Tuloksemme mukaan tutkimusohje ei ole käyttökelpoinen. Kirjallisuuteen perustuvassa meta-analyysissä julkaistuista VUR tutkimuksista lapsilla, havaitsimme, ettei leikkauksella korjattujen tai lääkityksellä hoidettujen lasten munuaisten kasvussa, arpeutumisessa tai virtsatieinfektioiden uusiutumisessa ollut eroa. Virtsarakon toiminnallisten tutkimusten arviointien toistettavuutta lääkärien kesken tutkimme 15 lapsen aineistossa ja havaitsimme huomattavaa vaihtelua arvioinneissa lääkärien välillä ja samaa tutkimusta uudelleen arvioitaessa. Suuren vaihtelun vuoksi näiden tutkimusten hyödyllisyyttä tulisi arvioida kriittisesti. Lisäksi 136 lapsen tutkimuksessa havaitsimme ettei poikkeava virtsarakon toiminnallisen tutkimuksen löydös ennustanut uusiutuvia virtsatieinfektioita tai virtsan takaisinvirtausta näillä lapsilla. Lapsilla VUR on mitä ilmeisimmin varsin tavallinen ilmiö myös terveillä lapsilla ja sen esiintyvyys ylittää aiemmin raportoidun 1 %:n esiintyvyyden. Virtsarakon toiminnalliset tutkimukset eivät ennusta VUR:n esiintyvyyttä tai virtsatietulehdusten toistuvuutta ja näiden tulosten hyöty on vähäinen. Virtsan takaisinvirtauksen leikkaushoitoon on harvoin aihetta eikä arvioimamme tutkimusohje auta löytämään VUR:a sairastavia lapsia.

Urinary tract infections (UTI) are among the most common infections in humans. Uropathogenic Escherichia coli (UPEC), the main causative agent of UTIs, can invade and replicate within bladder epithelial cells, and recent evidence demonstrated that some UPEC strains also survive within macrophages. To understand the mechanisms of host subversion that enable UPEC to survive within macrophages, and the contribution of macrophages to UPEC-mediated pathology, I performed host-pathogen co-transcriptome analyses using RNA sequencing. I developed an effective computational framework that simultaneously separated, annotated, and quantified the mammalian and bacterial transcriptomes. First, mouse bone morrow-derived macrophages (BMM) were challenged over a 24 h time course with UPEC reference strains, UTI89 (cystitis strain), 83972 and VR50 (asymptomatic bacteriuria strains) that possess contrasting intramacrophage phenotypes. My results showed that BMM responded to the three different UPEC strains with broadly similar gene expression programs. In contrast to the conserved pattern of BMM responses, the transcriptional responses of the different UPEC strains diverged markedly from each other. Hypothesizing that genes upregulated at 24 h post-infection may contribute to intramacrophage survival, I identified UTI89 genes upregulated at this time point, and showed that deletion of one of these genes (pspA) compromised intramacrophage survival of UPEC strain UTI89. Second, human monocyte-derived macrophages (HMDM) and BMM were challenged over a 24 h course with the UPEC strain EC958, a globally disseminated, multi-drug resistant strain. My analysis identified extensive divergence in UPEC-regulated orthologous gene expression between HMDM and BMM, and I validated both known and novel genes in the context of differential regulation. On the contrary, the transcriptional response of EC958 showed a broad conservation across both mammalian intramacrophage environments. My study thus provides both a unique co-culture approach to study infection in vitro and a technological framework for simultaneously capturing global changes in host-pathogen interactions at the transcriptional level in co-cultures. In conclusion, this work has generated new insights into the mechanisms that UPEC strains exploit to persist within the mouse intramacrophage environment, as well as differences in the transcriptional repertoire of HMDM and BMM challenged with the same UPEC strain.

No description available.

京都大学 / 新制・課程博士 / 博士(医学) / 甲第23764号 / 医博第4810号 / 新制||医||1056(附属図書館) / 京都大学大学院医学研究科医学専攻 / (主査)教授 長尾 美紀, 教授 佐藤 俊哉, 教授 永井 洋士 / 学位規則第4条第1項該当 / Doctor of Medical Science / Kyoto University / DFAM

The main object of the research is to analyze the effect of the clinical intervention algorithms proposed for reducing antibiotic use for older adults in long-term care facilities (LTCFs) by managing urinary tract infections (UTIs). 20 paired nursing homes were enrolled in the 12-month study. Within each pair, one was randomized to use of the intervention algorithms and the other to use of regular management. Cluster-level paired t-tests (unweighted and weighted) and regression analyses (unweighted and weighted) were used in the analysis of the data. Paired t-tests show that the algorithms did not significantly reduce the antibiotic use, the number of urine cultures or the antibiotic use for urinary infections in most months. However, they did reduce the proportion of antibiotic use for urinary infections significantly in most months. Regression analysis indicates that the difference between the control group and intervention group has no significant increasing or decreasing trend with time (month). And the algorithms significantly reduced the antibiotic use for urinary infections, number of cultures and the proportions through the 12-month study. The analyses reached a similar conclusion using nonparametric methods and weighted analysis. / Thesis / Master of Science (MS)

Tyrimo tikslas: išsiaiškinti slaugytojų vaidmenį su šlapimo pūslės kateterizacija susijusių šlapimo takų infekcijų išsivystyme ir profilaktikoje. Tyrimo uždaviniai: 1. Įvertinti slaugytojų, dirbančių reanimacijos ir intensyvios terapijos skyriuose, teorines žinias apie šlapimo takų infekcijas, jų rizikos veiksnius bei profilaktiką; 2. Įvertinti ar slaugytojos, dirbančios reanimacijos ir intensyvios terapijos skyriuose, žino kaip taisyklingai atlikti šlapimo pūslės kateterizaciją laikantis slaugos procedūrų metodikos reikalavimų; 3. Nustatyti, kokias profilaktikos priemones bei metodus taiko reanimacijos ir intensyvios terapijos skyrių slaugytojos, kad būtų išvengta šlapimo takų infekcijų; 4. Pateikti praktines rekomendacijas. Tiriamoji grupė: tyrime dalyvavo 104 slaugytojos, dirbančios KMUK, Kauno 2-osios klinikinės ligoninės, Kauno apskrities ligoninės ir Kauno Raudonojo Kryžiaus klinikinės ligoninės reanimacijos ir intensyvios terapijos skyriuose. Tyrimo metodai: anketinė apklausa ir statistinė duomenų analizė. Tyrimas buvo atliekamas 2009 m. vasario – kovo mėnesiais. Apklausai naudota nestandartizuota autorinė anketa, kuri buvo sudaryta remiantis literatūros analize ir Lietuvos Respublikos sveikatos apsaugos ministro įsakymu patvirtinta higienos norma HN 47-1:2008 “Sveikatos priežiūros įstaigos. Higieninės ir epidemiologinės priežiūros reikalavimai.“, ir tyrėjos paruoštas veiklos testas. Tyrimo metu gauti duomenys apdoroti naudojant SPSS 13.0 versijos statistinį duomenų... [toliau žr. visą tekstą] / The goal of the research – to find out what is the role of the nurses in the development and prophylaxis of the catheter – associated urinary tract infections. Research tasks: 1. Evaluate the theoretical knowledge about the urinary tract infections and their risk’s factors and prophylaxis of the nurses working in the units of Intensive care; 2. Evaluate do the nurses working in the units of Intensive care know how to do the urinary bladder catheterization properly according to the requirements of the methodology of the care procedures; 3. Estimate what preventive measures and methods are used by the nurses of Intensive care units in order to avoid the urinary tract infections; 4. Give the practical recommendations. Investigative group: 104 nurses working in the units of intensive care in Kaunas University Hospital, the Second Kaunas Clinical Hospital, Kaunas Regional Hospital and Kaunas Red Cross Hospital took part in this research. The methods of the research: questionnaire and statistical data analyses. The research was made from January to March in the year 2009. The nonstandard authorized questionnaire which was made according to the analyses of the literature and certified hygiene norm HN 47-1:2008 „Health Care Institutions. Sanitary and epidemiological care requirements.“ affirmed by the Minister of Health of the Republic of Lithuania and the test prepared by the researcher. The data received during the research chiseled using the SPSS 13.0 version of the... [to full text]