Halogenierte Verbindungen treten in der Natur in einer großen Vielzahl auf. Ihre Funktionen können sehr vielfältig sein und reichen von antimikrobiellen Aktivitäten bis hin zu pflanzlichen Wachstumsregulatoren. Vor allem in Pilzen und Bakterien gibt es eine Reihe halogenierter Substanzen. Die Synthesewege und beteiligten Enzyme dieser Verbindungen sind weitestgehend aufgeklärt. Bei einer Klasse von halogenierenden Enzymen handelt es sich um Flavin-abhängige Tryptophan-Halogenasen, welche die Aminosäure Tryptophan regioselektiv und substratspezifisch an bestimmten Positionen des Indolrings halogenieren können. Tryptophan ist eine essenzielle Aminosäure, welche sehr vielfältige Funktionen innerhalb der Zellen besitzt. So wird diese in Polypeptidketten von Enzymen und Proteinen eingebaut und dient als Vorstufe für viele verschiedene Stoffwechselprodukte. Das Pflanzenhormon Indol-3-Essigsäure (IAA) leitet sich z. B. aus ebendieser Aminosäure ab. Pflanzenhormone haben sehr vielfältige Funktionen innerhalb der Pflanzen und spielen z. B. bei der Entwicklung, Differenzierung und Abwehr eine wichtige Rolle. In einigen Pflanzen konnte eine halogenierte Form von IAA, die 4-Chlorindol-3-Essigsäure, nachgewiesen werden. In verschiedenen Versuchen konnte gezeigt werden, dass diese Verbindung eine erhöhte Reaktivität gegenüber der nicht halogenierten Form aufweist. Die Wirkung dieser Substanz wurde in den letzten Jahrzehnten gut untersucht, über die an der Synthese beteiligten Enzyme dieses Pflanzenhormons ist jedoch kaum etwas bekannt. Im Rahmen dieser Arbeit wurden Gene von drei bakteriellen Tryptophan-Halogenasen (pyrH, thiH und prnA) in der Modellpflanze Arabidopsis thaliana exprimiert und die Bildung von chlorierten Substanzen genauer untersucht. Hauptaugenmerk wurde dabei auf mögliche chlorierte Metabolite gelegt, welche sich von der Aminosäure Tryptophan ableiten. Neben der Expression der bakteriellen Halogenasegene wurden diese zusätzlich für die Modellpflanze optimiert und unter der Kontrolle des 2× 35S-Promotors in Arabidopsis thaliana transformiert. Die heterologe Expression von AtpyrH, AtthiH, AtprnA, sowie der optimierten Gene AtpyrHopt, AtthiHopt und AtprnAopt konnte in verschiedenen transgenen Linien in den Pflanzen nachgewiesen werden. Die Expression der Halogenasegene variiert dabei in den untersuchten Linien. Durch die Optimierung konnte keine erhöhte Expression der Gene erzielt werden. Lediglich bei der Expression von AtpyrHopt zeigte sich ein erhöhtes Niveau der Genregulation im Vergleich zu AtpyrH. Der Nachweis, dass die transgenen Arabidopsis thaliana-Pflanzen, welche eines der Halogenasegene exprimieren, in der Lage sind die Aminosäure an der entsprechenden Position (5, 6 oder 7) zu halogenieren konnte für alle stabil transformierten Gene erbracht werden. Zusätzlich gelang es, die Halogenase-Enzyme aus transgenen Pflanzen von AtpyrH und AtpyrHopt anzureichern und deren Funktionsfähigkeit in einem Enzym-Test nachzuweisen. Es konnten ebenfalls weitere chlorierte Intermediate detektiert werden, welche u. a. Vorläufermoleküle des Hormons IAA aber auch weiterer Substanzen wie z. B. Camalexin sind. Für Arabidopsis thaliana-Wildtyp konnte die Möglichkeit zur Bildung von Cl-IAA durch die Zugabe von chloriertem Tryptophan gezeigt werden. Die an der Biosynthese beteiligten Enzyme können das chlorierte Substrat verwenden und dem Stoffwechsel zuführen. Die Bildung der chlorierten Verbindungen erfolgte in den transgenen Arabidopsis thaliana-Pflanzen ohne eine zusätzliche Expression einer Flavin-Reduktase. Das für die Halogenierungsreaktion notwendige FADH2 kann durch die Pflanzen selbst zur Verfügung gestellt werden. Die unterschiedliche Regulation der Gene führte bei den transgenen Linien nicht zu phänotypischen Unterschieden. Sowohl die Entwicklung der Pflanzen, als auch die Anzahl und Größe der Rosettenblätter entspricht dem Wildtyp und ist durch die Bildung chlorierter Verbindungen nicht beeinflusst. In verschiedenen Tests wurde die erhöhte Bioaktivität sowohl von chloriertem Tryptophan als auch chlorierter IAA in in vitro Experimenten mit verschiedenen Pflanzen bestätigt. Chlorierte IAA hemmte zusätzlich dazu das Wachstum des Bakteriums Pseudomonas syringae pv. tomato DC3000. In phytopathologischen Untersuchungen mit verschiedenen transgenen Pflanzen zeigte sich, dass Linien von AtthiHopt, AtprnA und AtprnAopt mitunter eine verbesserte Resistenz gegen bestimmte Pathogene aufweisen. Die Ergebnisse dieser Arbeit zeigen, dass die Bildung von chloriertem Tryptophan und chloriertem Indol-3-Acetonitril durch die heterologe Expression von Flavin-abhängigen Tryptophan-Halogenasen in Arabidopsis thaliana sowohl durch die ursprünglichen bakteriellen, als auch die optimierten Gene möglich ist.

No description available.

ABSTRACT The porphyrias are a diverse group of metabolic disorders arising from diminished activity of enzymes in the heme biosynthetic pathway. They can present with acute neurovisceral symptoms, cutaneous symptoms, or both. The complexity of these disorders is demonstrated by the fact that some acute porphyria patients with the underlying genetic defect(s) are latent and asymptomatic while others present with severe symptoms. This indicates that there is at least one other risk factor required in addition to the genetic defect for symptom manifestation. A systematic review of the heme biosynthetic pathway highlighted the involvement of a number of micronutrient cofactors. An exhaustive review of the medical literature uncovered numerous reports of micronutrient deficiencies in the porphyrias as well as successful case reports of treatments with micronutrients. Many micronutrient deficiencies present with symptoms similar to those in porphyria, in particular vitamin B6. It is hypothesized that a vitamin B6 deficiency and related micronutrient deficiencies may play a major role in the pathogenesis of the acute porphyrias. In order to further investigate the porphyrias, a computational model of the heme biosynthetic pathway was developed based on kinetic parameters derived from a careful analysis of the literature. This model demonstrated aspects of normal heme biosynthesis and illustrated some of the disordered biochemistry of acute intermittent porphyria (AIP). The testing of this model highlighted the modifications necessary to develop a more comprehensive model with the potential to investigated hypotheses of the disordered biochemistry of the porphyrias as well as the discovery of new methods of treatment and symptom control. It is concluded that vitamin B6 deficiency might be the risk factor necessary in conjunction with the genetic defect to trigger porphyria symptoms.

La photosynthèse artificielle est considérée comme étant un atout capable de fournir des carburants alternatifs et renouvelables par conversion et stockage de l'énergie solaire. Une approche prometteuse consiste en un développement de photo-catalyseurs moléculaires inspirés par des enzymes photosynthétiques naturelles. La première partie de cette thèse concerne les modèles artificiels du photosystème II (qui catalyse l'oxydation d'eau), composé d'un chromophore et d’un relais d’électrons comme équivalent synthétique correspondant à l'ensemble P680-TyrZ/His190 du photosystème II. Trois complexes ruthénium polypyridyl - imidazole - phénol avec un groupe méthylique à différentes positions sur l'anneau phénolique (Ru-xMe) ont été synthétisés et caractérisés par des méthodes électrochimiques et photophysiques. L’augmentation, comparée aux complexes précédents, du potentiel redox des groupes phénols (0.20 V->0.9 V par rapport à l’électrode de ferrocène) rend leur fonction de relais d’électron dans un système photocatalytique pour l'oxydation d'eau thermodynamiquement possible. Des études d’absorption transitoire ont révélé que le transfert d’électron intramoléculaire est rapide (5-10 µs dans solvant aprotique et < 100 ns dans l'eau) malgré la faible force motrice, mettant en evidence l'importance de la liaison hydrogène entre le phénol et le groupe imidazole. Les légères différences entre les trois complexes Ru-xMe ainsi que l’étude de l'effet de bases externes nous ont permis d’établir un mécanisme dans laquelle l'imidazole est impliqué dans une réaction de transfert de proton en cascade. L'acceptation du proton phénolique durant l'oxydation du ligand rend son deuxième site azote plus acide et seulement la déprotonation de ce dernier bascule l’équilibre réactionnel complétement vers l'oxydation du ligand. La deuxième partie de cette thèse consiste en la synthèse d’un complexe chromophore-tryptophane en utilisant une approche de chimie dite « click ». On a montré que l'oxydation, induite par la lumière, du Trp au sein du complexe Ru-tryptophane suit un mécanisme ETPT. Selon le pH, les radicaux du tryptophane (Trp• ou TrpH•⁺) ont été détectés et les mesures spectrales à différents temps ont montrés la transition entre les deux formes radicalaires. La déprotonation du radical dépend de la concentration d'eau assurant la fonction d’accepteur de proton. La dernière partie de la thèse concerne nos efforts à lier, par une liaison covalente, une unité catalytique au module de chromophore- relais électronique caractérisé précédemment. L'approche de chimie « click » n’était pas efficace pour l’obtention de l’assemblage photocatalytique final. Donc, l'activation biomoléculaire d'un catalyseur Mn salen a été effectuée et la formation de l’espèce Mn(IV) a été observée. Etant une étape vers l'utilisation de ces types de photocatalyseurs dans une cellule photoélectrochimique, un chromophore [Ru(bpy)₃]²⁺ avec des groupes d’ancrage phosphonate a été synthétisé (Ru-phosphonate) et greffé sur la surface méso-poreuses d'un semi-conducteur de TiO₂ pour effectuer des mesures du photocourant. / Artificial photosynthesis is often considered to have great potential to provide alternative, renewable fuels by harvesting, conversion and storage of solar energy. One promising approach is the development of modular molecular photocatalysts inspired by natural photosynthetic enzymes. The first part of this thesis deals with artificial mimics of the water oxidizing photosystem II composed of a chromophore and an electron relay as synthetic counterpart of the P680-TyrZ/His190 ensemble of photosystem II. Three ruthenium polypyridyl – imidazole - phenol complexes with varying position of a methyl group on the phenol ring (Ru-xMe) were synthesized and characterized by electrochemical and photophysical methods. As an improvement compared to earlier complexes the increased redox potential (~0.9 V vs. Ferrocene) of the phenol groups makes their function as an electron relay in a photocatalytic system for water oxidation thermodynamically possible. Time-resolved absorption studies revealed fast intramolecular electron transfer (<5-10 µs in aprotic solvent and <100 ns in water) despite the low driving force and the importance of the hydrogen bond between the phenol and the imidazole group was put in evidence. Slight differences between the three Ru-xMe complexes and investigation of the effect of external bases allowed to derive a mechanistic picture in which the imidazole is involved in a “proton domino” reaction. Accepting the phenolic proton upon ligand oxidation (within the H-bond) renders its second nitrogen site more acidic and only deprotonation of this site pulls the overall equilibrium completely towards oxidation of the ligand. Another part of this thesis comprises a chromophore-tryptophan construct synthesized using a click chemistry approach. Light-induced oxidation of Trp in this Ru-tryptophan complex was shown to follow ETPT mechanism. Depending on the pH conditions tryptophan radicals, either Trp• or TrpH•⁺ were detected and spectral measurement at different time showed the transition between the two forms. Deprotonation of the radical was dependent on the concentration of water as proton acceptor. Later part of the thesis deals with efforts to covalently bind a catalytic unit to the previously characterized chromophore-electron relay module. The click chemistry approach was not successful to obtain the final photocatalytic assembly. Therefore bimolecular activation of a Mn salen catalyst was performed and formation of Mn(IV) species was observed. As a step towards utilization of these types of photocatalysts in a photoelectrochemical cell a [Ru(bpy)₃]²⁺ chromophore with phosphonate anchoring groups (Ru-Phosphonate) was synthesized and grafted on the surface of a TiO₂ mesoporous semiconductor surface anode to perform photocurrent measurements.

<p>The human glucose transporter GLUT1 is abundant in red blood cells, the blood-brain barrier and epithelial cells, where it mediates the transport of the energy metabolite, glucose. In the present work some properties of GLUT1, including affinity binding of both substrates and inhibitors, transport rates as well as permeabilities of aromatic amino acids and drug-membrane interactions were analyzed by chromatographic methods.</p><p>Reconstitution by size-exclusion chromatography on Superdex 75 from a detergent with a low CMC that provides monomeric GLUT1 was examined regarding D-glucose- and CB binding as well as D-glucose transport. Upon steric immobilization in Superdex 200 gel beads, residual detergent could be washed away and dissociation constants in the same range as reported for binding to GLUT1 reconstituted from other detergents were obtained. The transport rate into the GLUT1 proteoliposomes was low, probably due to residual detergent. Binding to GLUT1 at different pH was analyzed and the affinity of glucose and GLUT1 inhibitors was found to decrease with increasing pH (5–8.7). The average number of cytochalasin B-binding sites per GLUT1 monomers was, in most cases, approximately 0.4. GLUT1 may work as a functional monomer, dimer or oligomer. To determine whether GLUT1 was responsible for the transport of the aromatic amino acids tyrosine and tryptophan, uptake values and permeabilities of these amino acids into liposomes and GLUT1 proteoliposomes were compared to the permeabilities of D- and L- glucose in the same systems. Dihydrocytochalasin B was identified to be a new inhibitor of tyrosine and tryptophan transport into red blood cells. Ethanol turned out to inhibit the specific binding between CB and GLUT1 and also to decrease the partitioning of CB and drugs into lipid bilayers. A capacity factor for drug partitioning into membranes that allows comparison between columns with different amount of immobilized lipids was validated, and turned out to be independent of flow rate, amount of lipids and drug concentration in the ranges tested.</p>

The human glucose transporter GLUT1 is abundant in red blood cells, the blood-brain barrier and epithelial cells, where it mediates the transport of the energy metabolite, glucose. In the present work some properties of GLUT1, including affinity binding of both substrates and inhibitors, transport rates as well as permeabilities of aromatic amino acids and drug-membrane interactions were analyzed by chromatographic methods. Reconstitution by size-exclusion chromatography on Superdex 75 from a detergent with a low CMC that provides monomeric GLUT1 was examined regarding D-glucose- and CB binding as well as D-glucose transport. Upon steric immobilization in Superdex 200 gel beads, residual detergent could be washed away and dissociation constants in the same range as reported for binding to GLUT1 reconstituted from other detergents were obtained. The transport rate into the GLUT1 proteoliposomes was low, probably due to residual detergent. Binding to GLUT1 at different pH was analyzed and the affinity of glucose and GLUT1 inhibitors was found to decrease with increasing pH (5–8.7). The average number of cytochalasin B-binding sites per GLUT1 monomers was, in most cases, approximately 0.4. GLUT1 may work as a functional monomer, dimer or oligomer. To determine whether GLUT1 was responsible for the transport of the aromatic amino acids tyrosine and tryptophan, uptake values and permeabilities of these amino acids into liposomes and GLUT1 proteoliposomes were compared to the permeabilities of D- and L- glucose in the same systems. Dihydrocytochalasin B was identified to be a new inhibitor of tyrosine and tryptophan transport into red blood cells. Ethanol turned out to inhibit the specific binding between CB and GLUT1 and also to decrease the partitioning of CB and drugs into lipid bilayers. A capacity factor for drug partitioning into membranes that allows comparison between columns with different amount of immobilized lipids was validated, and turned out to be independent of flow rate, amount of lipids and drug concentration in the ranges tested.

La presente Tesis Doctoral tiene como objetivo profundizar en los conocimientos sobre ritmos biológicos y comportamiento alimentario de tres especies de peces teleósteos de interés en acuicultura: tenca (Tinca tinca), trucha alpina (Salvelinus alpinus) y lubina (Dicentrarchus labrax).Con este fin se ha investigado la influencia de factores bióticos y abióticos en la sincronización de los ritmos de actividad locomotora y alimentaria, así como el carácter endógeno y/o exógeno de estos ritmos. A su vez, se ha profundizado en el comportamiento individual de truchas alpinas mantenidas en grupo, mediante una nueva metodología que permite estudiar los ritmos de demanda voluntaria de alimento y la autoselección dietaria de los individuos. Asimismo, se ha analizado la influencia de los niveles endógenos de melatonina, modificados mediante la administración de melatonina exógena y de su aminoácido precursor (triptófano) en la dieta, sobre la concentración de cortisol y el ritmo de actividad locomotora en lubina. / This Doctoral Thesis deeps into the knowledge about biological rhythms and feeding behaviour in three teleostean fish species of interest in aquaculture: tench (Tinca tinca), Arctic charr (Salvelinus alpinus) and European sea bass (Dicentrarchus labrax). With this aim, the influence of biotic and abiotic factors has been researched in the field of synchronization of locomotor and feeding rhythms, as far as the endogenous or exogenous character of these rhythms. Moreover, individual feeding behaviour of Arctic charr kept in groups has been studied trying a new methodology which allows the monitoring of feeding demands and dietary self-selection of individuals. Furthermore, influence of endogenous melatonin modified through exogenous melatonin and its precursor amino acid (tryptophan) administration in the diet, in the cortisol levels and locomotor activity rhythms in sea bass were analysed.

Islet transplantation has found its niche in diabetes treatment. It has contributed to a better quality of life and better glycemic control of patients with diabetes suffering from severe hypoglycemia that are not eligible for vascularized pancreas transplantation. Islet isolation is a technically challenging procedure. The different studies within this doctoral thesis aim to improve and standardize different steps in the isolation procedure. They are in particular looking to improve human pancreas preservation during cold storage, to optimize islet release from the exocrine tissue and to assess whether the isolated islet yield can be predicted from a biopsy. We found that pancreas preservation with pre-oxygenated perfluorodecalin (two-layer method) did not improve the ischemic tolerance of the human pancreas as compared to cold storage with the University of Wisconsin (UW) solution. Furthermore, in pancreas with long cold ischemia time (CIT) (&gt;10 hours), Histidine-Tryptophan-Ketoglutarate (HTK) had a limited preservation capacity as compared with the UW solution with respect to isolation outcome. We also found that during enzymatic pancreas digestion, Vitacyte HA was able to provide a similar islet yield and quality as Serva NB1 with less collagenase activity and shorter digestion time. We further describe the first experience with a new GMP manufactured enzyme called Liberase MTF-S for successful human islet isolation. Finally, we found that the isolated islet yield could not be predicted from a biopsy taken from the head of the pancreas concerning solely morphological parameters of the islets tissue. The improvement of pancreas preservation will allow for marginal organs with prolonged cold ischemia time to expand the donor pool. Better knowledge of how the pancreatic extracellular matrix is digested by collagenase will lead to a fast and predictable islet release from the exocrine tissue. By standardizing the isolation procedure and improving organ selection we will increase the success rate in human islet isolation, thereby making islet transplantation available for more patients.

Le sepsis est à l’origine d’une dysfonction immunitaire prolongée responsable d’infections nosocomiales et d’une mortalité tardive élevée. Sa physiologie complexe demeure mal connue et il n’existe aucun traitement spécifique en dehors de l’antibiothérapie et des thérapeutiques de suppléance d’organes. Nous nous sommes intéressés au rôle des cellules myéloïdes dans cette dysfonction immunitaire. Nous avons pu montrer qu’il existe chez les patients atteints de sepsis une augmentation du nombre de cellules suppressives d’origine myéloïde monocytaires (M-MDSC) CD14+HLA-DRlow/- et granulocytaires (G-MDSC) identifiées comme des granulocytes de faible densité CD14-CD15+. Ces cellules sont responsables d’une activité Indoléamine 2,3-dioxygénase (IDO) et arginase 1, et leur déplétion permet de restaurer la prolifération des lymphocytes T in vitro. L’augmentation précoce des G-MDSC prédit la survenue ultérieure d’infections nosocomiales. De même, l’augmentation de l’activité IDO et de l’arginase 1 plasmatique sont associées à un mauvais pronostic. Au total, nous avons pu démontrer que les cellules myéloïdes acquièrent un phénotype suppresseur en partie responsable de l’immunodépression acquise et du pronostic péjoratif chez les patients septiques. Afin de restaurer les capacités immunitaires des patients, les MDSC pourraient devenir une future cible thérapeutique. / Sepsis results in a sustained immune dysfunction responsible for poor prognosis and nosocomial infections. Sepsis physiology remains poorly understood and no treatment exists currently, excepted from antibiotherapy and life-support techniques. We asked if myeloid cells could play a role in this sustained immune dysfunction. We demonstrated that Peripheral CD14+HLA-DRlow/- monocytic-myeloid-derived suppressor cells (MDSCs) and CD14-CD15+ low-density granulocytes identified as granulocytic- (G-)MDSCs were increased in septic patients. In vitro, arginase and IDO activities relied on MDSCs and depletion of both subsets restored T-cell proliferation. The initial proportion of G-MDSC predicted occurrence of nosocomial infections. Similarly, high plasma Indoleamine 2,3-dioxygenase (IDO) activity and arginase 1 level were associated with poor outcome. Altogether, our results demonstrate that myeloid cells acquire suppressive functions during sepsis, partially responsible for the sustained immune dysfunction and poor outcome. MDSCs may become a future therapeutic target to restore the immune capacities of septic patients.

The present thesis deals with different aspects of the chemistry and photo-biology of various ferrocene-conjugated metal complexes, their interaction with double helical DNA, DNA photocleavage and photo-enhanced cytotoxicity in visible light. Phenyl analogues of the active complexes have been synthesized and used for comparison in biological assays. Chapter I provides an introduction to the potential of metal complexes as photochemotherapeutic agents with special reference to organometallic compounds. A brief overview of Photodynamic Therapy (PDT) as a new modality of cancer treatment has been given. Various modes of non-covalent interactions of small molecules with duplex DNA are mentioned. Recent reports on the metal-based photocytotoxic and DNA cleaving agents including photoactivatable organometallic compounds are discussed. The objective of the present investigation is also presented in this chapter. Chapter II presents the synthesis, characterization, structure, DNA binding, DNA photocleavage, photocytotoxicity, mechanism of cell death and cellular localization of ferrocene-conjugated L-methionine reduced Schiff base Cu(II) complexes of phenanthroline bases. To explore the role of the ferrocenyl moiety the phenyl analogues of the ferrocenyl complexes are synthesized and used as controls for comparison purpose. Chapter III deals with the photo-induced DNA cleavage and photo-enhanced cytotoxicity of ferrocene-appended L-tryptophan Cu(II) complexes of heterocyclic bases. The synthesis, characterization, structural comparisons, DNA binding, DNA photocleavage, photocytotoxic activity and cell death mechanism in visible light are discussed in detail. Chapter IV describes the synthesis, characterization and structure of ferrocenylmethyl-L-tyrosine Cu(II) complexes of phenanthroline bases. The complexes are evaluated for DNA binding, DNA photocleavage and photocytotoxic activity in visible light. The cellular localization of the complexes and the mechanism of cell death induced by the complexes are also discussed. Chapter V presents the photocytotoxic effect of ferrocene-conjugated L-amino acid reduced Schiff base Cu(II) complexes of anthracenyl/pyrenyl imidazophenanthroline. The ability of the complexes to bind to double helical DNA and cleave it under photo-illumination conditions is described. Evaluation of the complexes as photochemotherapeutic agents and comparison with currently clinically available drug Photofrin are presented. The mechanism of cancer cell death and cellular localization of the complexes are studied by fluorescence microscopy. Chapter VI describes the synthesis, characterization and photochemotherapeutic efficacy of Cu(II) complexes having ferrocene-appended L-amino acid reduced Schiff base ligands and the naturally occurring polyphenol curcumin. Stabilization of curcumin by complexation to metal for improved photodynamic effect in cancer cells is described with comparison to the parent dye and clinically used drug Photofrin. The mechanism of cell death induced by the copper complexes and their localization in cancer cells are also presented. Finally, the summary of the dissertation and conclusions drawn from the present investigations are presented. The references in the text have been indicated as superscript numbers and compiled at the end of each chapter. The complexes presented in this thesis are represented by bold-faced numbers. Crystallographic data of the structurally characterized complexes are given in CIF format in the enclosed CD (Appendix-I). Due acknowledgements have been made wherever the work described is based on the findings of other investigators. Any unintentional omission that might have happened due to oversight or mistake is regretted.