Submitted by JULIANA APARECIDA CERQUEIRA null (julianacerqueira.vet@gmail.com) on 2017-08-16T14:34:40Z No. of bitstreams: 1 Dissertação PDF.pdf: 1523644 bytes, checksum: 34b73cfc23737b94845062cc56505e49 (MD5) / Approved for entry into archive by Monique Sasaki (sayumi_sasaki@hotmail.com) on 2017-08-22T20:39:49Z (GMT) No. of bitstreams: 1 cerqueira_ja_me_jabo.pdf: 1523644 bytes, checksum: 34b73cfc23737b94845062cc56505e49 (MD5) / Made available in DSpace on 2017-08-22T20:39:49Z (GMT). No. of bitstreams: 1 cerqueira_ja_me_jabo.pdf: 1523644 bytes, checksum: 34b73cfc23737b94845062cc56505e49 (MD5) Previous issue date: 2017-07-28 / Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) / As principais alterações fisiológicas ou patológicas induzidas pelo exercício que ocorrem na musculatura esquelética ou cardíaca podem ser identificadas por meio de biomarcadores séricos. Consolidados em atletas da espécie humana e equina, são praticamente inexistentes em cães estudos sobre a dinâmica destes biomarcadores relacionados com a prática de exercício máximo e treinamento. Objetivou-se determinar a cinética dos biomarcadores séricos musculares creatina quinase (CK), aspartato aminotransferase (AST), mioglobina; e cardíacos, troponina cardíaca I (cTnI) e creatina quinase isoenzima MB (CK-MB) de cães submetidos a esforço intenso e condicionamento aeróbio. A ação da venopunção sobre os biomarcadores também foi avaliada. Foram utilizados 18 cães hígidos da raça Beagle distribuídos em três grupos: sedentário (S), não treinado (NT) e treinado (T). Os cães foram submetidos a dois testes de esforço incremental (TEI-1 e TEI-2) para obtenção da curva lactato-velocidade (CLV). Verificou-se se a CLV teve modelo exponencial. O programa de treinamento foi realizado em esteira por 8 semanas na velocidade relacionada a 70-80 % do limiar de lactato (VLL). Determinou-se a velocidade correspondente a frequência cardíaca no momento da fadiga (VFCFadiga). Os biomarcadores séricos foram quantificados nos momentos basal, antes e 1, 6, 12, 24, 48 e 72 h após os TEIs. Aplicou-se análise de variância de dois fatores para amostras repetidas no tempo seguida por teste de Tukey e correlação de Pearson (P≤0,05). Elevação (P≤0,05) das velocidades correspondentes a VLL e VFCFadiga evidenciou melhora da aptidão aeróbia do grupo T. Observou-se aumento (P≤0,05) na atividade sérica de CK e AST, com valores máximos após 6 h em ambos os TEIs, com retorno aos valores basais após 12-24 h. Em conjunto, a avaliação do comportamento dos biomarcadores musculares revelou recuperação do tecido muscular após os TEIs. A cTnI e a mioglobina não se alteraram. A CK-MB apresentou pico de elevação (P≤0,05) após 1 h e retorno aos valores basais após 12 h em ambos os TEIs, apontando ausência de lesões musculares cardíacas. Observou-se forte correlação entre CK-AST (P=0,849) e correlação moderada entre CK-CK-MB (0,493) e AST-CK-MB (0,501). Parece que as atividades séricas da CK e AST podem sofrer interferência da venopunção jugular. Conclui-se que o exercício intenso provocou aumento fisiológico das atividades séricas das enzimas musculares e cardíacas com rápida recuperação, sem indicativo de lesões. O protocolo de condicionamento físico melhorou o rendimento dos cães, mas não influenciou a atividade sérica das enzimas musculares e cardíacas. Para o monitoramento desportivo em cães a CK-MB foi o biomarcador mais confiável. / The main physiological or pathological alterations induced by exercise on skeletal or cardiac musculature can be identified using serum biomarkers. While studies on the dynamics of such biomarkers are consolidated in humans and horses, they are virtually inexistent on maximum exercise and training among dogs. This study aimed to determine the kinetics of the muscle serum biomarkers creatine kinase (CK), aspartate aminotransferase (AST), and myoglobin and of cardiac biomarkers cardiac troponin I (cTnI) and creatine kinase isoenzyme MB (CK-MB) of dogs subjected to intense effort and aerobic conditioning. The effect of venipuncture on the biomarkers was also assessed. Eighteen healthy Beagle dogs were assigned to three groups: sedentary (S), untrained (U), and trained (T). The dogs were subjected to two incremental effort tests (IET-1 and IET-2) so that their lactate vs. velocity curve (LVC) could be obtained. It was verified whether LVC followed an exponential model. The eight-week training program was carried out on a treadmill with speed set to 70-80% of the velocity at lactate threshold (VLT). The velocity corresponding to the heart rate at the moment of fatigue (VHRFatigue) was determined. Serum biomarkers were quantified at the baseline, before, and 1, 6, 12, 24, 48, and 72 h after the IETs. Two-factor analysis of variance was applied for samples repeated over time followed by Tukey’s test and Pearson correlation (P≤0.05). The increase (P≤0.05) in the velocyties corresponding to VLT and VHRFatigue indicated an improvement in aerobic fitness of group T. Serum activity of CK and AST increased (P≤0.05), reached maximum values after 6 h in both IETs, and returned to baseline levels after 12-24 h. As a whole, the assessment of the behavior of muscle biomarkers showed recovery of muscle tissues after the IETs. Levels of cTnI and myoglobin were unaltered. Peak CK-MB (P≤0.05) was observed 1 h into the IETs and returned to baseline levels 12 h after they finished, indicating no cardiac muscle lesions. A strong correlation between CK and AST (P=0.849) and moderate correlations between CK and CK-MB (0.493) and AST and CK-MB were observed. Apparently, serum activities of CK and AST may be impacted by jugular venipuncture. It is concluded that intense exercise led to a physiological increase in serum activities of muscle and cardiac enzymes with rapid recovery and no apparent lesions. The physical conditioning protocol improved the performance of the dogs, but did not impact the serum activity of muscle and cardiac enzymes. CK-MB was the most reliable sports monitoring biomarker in dogs. / CNPq: 132811/2016-2

As nitrogen (N) is a critical nutrient for plant growth, the development of synthetic N fertilisers dramatically changed agricultural production in the twentieth century. Improvement in N use efficiency (NUE) has been a focus of breeding for grain crop species, since protein is an important component of the harvested product. The study of NUE in sugarcane has lagged behind grain crops, mainly because N is not a component of sucrose, the primary product of the traditional sugarcane industry. Recently, improvement in NUE has become a focus of sugarcane breeding, due largely to environmental concerns regarding pollution from high N fertilisation, and the increasing cost of N fertilisers. This thesis aimed to gain an initial understanding of the genetic basis for variability in NUE in sugarcane. This was achieved through: (i) the screening of 168 sugarcane genotypes under limiting and non-limiting N supply in two glasshouse experiments; (ii) the mapping of marker-trait associations (MTA) for biomass and physiological traits under limiting and non-limiting N supply in a sugarcane mapping population; (iii) the analysis of expression of candidate genes encoding enzymes involved in the central processes of N assimilation and remobilisation in plants; and (iv) the mapping of candidate genes in a sugarcane genetic map. Genetic variation was identified for growth traits as well as physiological traits including %N, internal NUE (iNUE, g dry weight g-1 N) and leaf glutamine synthetase (GS) activity in a sugarcane mapping population. These traits were also analysed for linkage with genetic markers. Genetic variation in the screened genotypes was higher under limiting N supply, a finding that was reflected by the fact that marker-trait associations (MTA) for increases in iNUE were not identified under non-limiting N supply in the commercial parent of the mapping population. Contrary to findings in grain crop species, there was no link between GS activity and other traits, either through phenotypic correlations or co-location of MTA. The expression of candidate genes encoding GS, nitrate reductase (NR) and alanine amintotransferase (AlaAT) was quantified with Sequenom™ MassARRAY technology. Plants were grown under growth-limiting N supply, non-limiting N supply, or a N-pulse treatment, which consisted of growth-limiting N supply followed by non-limiting N supply 24 hours prior to sampling. Two genes, scAlaAT.d and scGS1.a, encoding AlaAT and GS respectively, were identified as non-responsive to changes in N supply, whereas scAlaAT.a, scGS1.b and scGS1.c had significantly (p<0.05) increased expression under a N-pulse, indicating an important role for these genes in the response of sugarcane to a sudden increase in N availability. The location of candidate genes associated with variation in NUE in a sugarcane genetic map were sought through restriction fragment length polymorphism (RFLP) markers. Twenty-two probes were screened, of which two generated single-dose markers, allowing the mapping of a single allele of scAspAT, encoding aspartate aminotransferase, and two alleles of scGS2, encoding plastidic GS. Because of the economic and environmental consequences of inefficient N fertiliser application, the development of sugarcane cultivars with improved NUE is essential. Since variation for NUE exists, especially in unimproved sugarcane varieties, this may be achieved through traditional breeding methods by screening existing breeding populations under limiting N supply. Additionally, an improved understanding of the genetic basis of variation for NUE in sugarcane should be pursued by further analysis of candidate gene response to changing N availability by screening widely varying cane species for differences in gene expression, enzyme activity and metabolite profiles. The further addition of candidate gene locations to sugarcane genetic maps will aid both future marker-assisted selection in breeding, and a fundamental understanding of genetic control of NUE variation. Through the development of sugarcane cultivars with improved NUE and an enhanced knowledge of the genetic control underpinning sugarcane N physiology, concerns regarding high N fertiliser applications may be mitigated and sustainability ensured.

Amino acid biosynthesis is an essential process in living organisms. Certain amino acids can be synthesized by some organisms but not by others. L-Lysine is one of the essential amino acids that bacteria can synthesize but humans cannot. This is somewhat inconvenient for humans as much of their L-lysine must come from their diet. However, the lack of the lysine biosynthetic pathway in humans makes the bacterial enzymes within the pathway attractive drug targets. Recently, a novel lysine biosynthetic pathway was discovered in plants, Chlamydiae and some archaea. It is called the diaminopimelate aminotransferase (DAP-AT) pathway. In this pathway, LL-DAP-AT plays a key role by directly converting L-tetrahydrodipicolinate to LL-DAP in a single step. This is a quite interesting characteristic of LL-DAP-AT as the above conversion takes three sequential enzymatic steps in the previously known lysine biosynthetic pathways. Due to its absence in humans, LL-DAP-AT would be an attractive target for the development of novel antibiotics. In order to understand the catalytic mechanism and substrate recognition of LL-DAP-AT, the structural characterization of LL-DAP-AT is of paramount importance. In this thesis, the overall architecture of LL-DAP-AT and its substrate recognition mechanism revealed by the crystal structures of LL-DAP-AT from Arabidopsis thaliana and Chlamydia trachomatis will be discussed. The crystal structure of the native LL-DAP-AT from A. thaliana (AtDAP-AT) presented in this thesis is the first structure of LL-DAP-AT to be determined. This structure revealed that LL-DAP-AT forms a functional homodimer and belongs to the type I fold family of PLP dependent aminotransferases. The subsequent determination of the substrate-bound AtDAP-AT structure showed how the two substrates, (LL-DAP and L-Glu) significantly different in size, are recognized by the same set of residues without significant conformational changes in the backbone structure. In addition, the LL-DAP-bound AtDAP-AT structure shows that the C-amino group of LL-DAP is recognized stereospecifically by the active site residues that are unique to the family of LL-DAP-AT enzymes. Lastly, the chlamydial LL-DAP-AT presented in this thesis shows a new open conformation for LL-DAP-AT. The implications of the conformational flexibility of CtDAP-AT on the differences in substrate specificities among LL-DAP-AT are discussed.

No description available.

Orientador: Ladaslav Sodek / Tese (doutorado) - Universidade Estadual de Campinas, Instituto de Biologia / Made available in DSpace on 2018-08-15T23:56:49Z (GMT). No. of bitstreams: 1 Rocha_Marcio_D.pdf: 1621644 bytes, checksum: 8286f523b3bd215cda289fe74ef3754c (MD5) Previous issue date: 2010 / Resumo: O papel do metabolismo do nitrogênio na sobrevivência de plantas noduladas de Lotus japonicus foi investigado durante períodos de alagamento. O acúmulo de alanina revelou ser um dos pontos críticos durante a hipoxia, uma vez que esse foi o único aminoácido cuja biossíntese não foi inibida pela deficiência de nitrogênio observada em plantas mutantes (leghemoglobina-RNAi). As alterações metabólicas induzidas durante o período de alagamento podem ser mais bem explicadas pela ativação do metabolismo da alanina em combinação com uma atividade parcial do ciclo de Krebs. O resultado final deste cenário metabólico resulta no acúmulo de alanina e succinato bem como na produção extra de ATP sob hipoxia. A importância do metabolismo da alanina também estaria relacionada com a capacidade de regular o nível de piruvato. Esta e todas as outras alterações são discutidas no contexto de modelos atuais sobre a regulação do metabolismo da planta / Abstract: The role of nitrogen metabolism in the survival of prolonged periods of waterlogging was investigated in highly flood-tolerant, nodulated Lotus japonicus plants. Alanine production revealed to be a critical hypoxic pathway being the only amino acid whose biosynthesis is not inhibited by N-deficiency resulting from RNAi silencing of nodular leghemoglobin. The metabolic changes which were induced following waterlogging can be best explained by the activation of alanine metabolism in combination with the modular operation of a split tricarboxylic acid (TCA) pathway. The sum result of this metabolic scenario is the accumulation of alanine and succinate and the production of extra ATP under hypoxia. The importance of alanine metabolism is discussed with respect to its ability to regulate the level of pyruvate, and this and all other changes are discussed in the context of current models concerning the regulation of plant metabolism / Doutorado / Biologia Vegetal / Doutor em Biologia Vegetal

No description available.

The synthesis and evaluation of a molecularly imprinted polymer has been undertaken using an oxazine-based tryptophanamide transition state analogue (TSA) as template. An efficient route to the synthesis of oxazine-based TSAs for the reaction of pyridoxamine and indole-3-pyruvic acid has been established, with yields of up to 80%. NMR titration studies were performed to examine the interactions between the functional monomer, methacrylic acid and the template. Complexation of the template by functional monomer in the presence of crosslinker showed an apparent KD of 0.63-0.79 ± 0.04 M (293 K, acetonitrile-d3) based upon the chemical shift of the template amide protons. TSA-imprinted and non-imprinted reference polymers were synthesized by free radical polymerization in acetonitrile. Polymer monoliths were ground and fractionated into a 25-63 μm size range. Polymer-ligand recognition studies were conducted using the polymers as HPLC stationary phases. An imprinting factor (IF) of 2.93 was observed for the TSA, indicating the selectivity of the imprinted sites for the template. Studies using the D- and L-enantiomers of the phenylalaninamide analogue of the template showed enantioselectivity in the case of the imprinted polymer, α = 1.10, though not in the case of the non-imprinted reference polymer (1.00). Using UV-spectroscopy based polymer-ligand binding studies, a maximum theoretical capacity (Bmax) of 0.059 ± 0.004 mmol·g-1 was observed for the imprinted polymer. Conclusively, an imprinted polymer with binding sites selective for the TSA was successfully prepared and shall subsequently be studied with respect to its capacity to catalyse the transamination reaction between pyridoxamine and indole-3-pyruvic acid to yield pyridoxal and tryptophan.

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / Mercury is an environmental contaminant, and may accumulate in living organisms causing several damage. Studies have shown that this metal causes several physiological and biochemical alterations in young rats which are prevented by zinc. Thus, this work investigated the in vivo and in vitro effects of HgCl2 and ZnCl2 on alanine aminotransferase (ALT), lactate dehydrogenase (LDH) and glucose 6-phosphatase (G6Pase) activities from liver and kidney of young rats to verify if the physiological and biochemical alterations induced by mercury, and prevented by zinc, are related to hepatic and renal metabolism. Glycemia and tissue glycogen levels (liver, kidney and muscle) were also monitored. Wistar rats were treated (s.c.) with saline or ZnCl2 (27 mg/kg/day) and with saline or HgCl2 (5.0 mg/kg/day) from 3rd to 7th and 8th to 12th days of age, respectively. Pups were sacrificed 24h after the last dose and samples were collected (blood, liver, kidney and muscle). For in vitro experimentation, the samples were collected similarly, with rats of 10 to 13 days old. Regarding in vivo experiments, the mercury treated rats presented an increase around 6 folds of the hepatic ALT activity, without alteration of renal ALT and hepatic LDH activities. Still, the mercury exposure significantly increases in 75% the G6Pase activity. The other parameters, glucose and glycogen, were not altered. The pre-exposure to zinc prevented totally the increase of liver ALT activity and partly the increase of hepatic G6Pase activity induced by mercury. In vitro results revealed that the serum and liver ALT and liver and kidney G6Pase activities were inhibited by mercury. The inhibitory effect may be related to chemical modification of sulfhydryl group of cysteine, since the mercury has great affinity for these groups, which contributes to its toxicity. Zinc inhibited liver and serum ALT activities in concentration of 100 μM. These results show that mercury induces distinct alterations in these enzymes when tested in vivo or in vitro, as well as when different sources of enzyme were used, hepatic and renal. The increased hepatic ALT and G6Pase activities suggest that animals exposed to mercury have an increased gluconeogenic activity in this tissue. Zinc prevents the in vivo effects of mercury on metabolic changes, confirming its important preventive role. / O mercúrio é um elemento tóxico, podendo acumular-se em organismos vivos causando-lhes vários danos. Estudos têm demonstrado que esse metal é capaz de causar várias alterações fisiológicas e bioquímicas em ratos jovens, as quais são prevenidas pela pré-exposição ao zinco. Assim, este trabalho investigou os efeitos in vivo e in vitro do HgCl2 e ZnCl2 sobre as atividades das enzimas alanina aminotransferase (ALT), lactato desidrogenase (LDH) e glicose 6-fosfatase (G6Pase) de fígado e rim de ratos jovens para verificar se as alterações fisiológicas e bioquímicas induzidas pelo mercúrio e impedidas pelo zinco, estão relacionados ao metabolismo hepático e renal. Os níveis glicêmicos e do glicogênio tecidual (fígado, rim e músculo) também foram monitorados. Ratos Wistar com três dias de idade foram tratados (s.c.) com salina ou ZnCl2 (27 mg/kg/dia) durante cinco dias consecutivos (do 3 o ao 7 o dia de idade) e com salina ou HgCl2 (5 mg/kg/dia) por mais cinco dias (do 8 o ao 12 o dia de idade). Os animais foram sacrificados 24 horas após a última dose e as amostras foram coletadas (sangue, fígado, rim e músculo). Para realização dos experimentos in vitro, amostras foram coletadas de maneira similar, com ratos de 10-13 dias de idade. Com relação aos experimentos in vivo, os ratos tratados com mercúrio apresentaram um aumento da atividade da ALT hepática de aproximadamente seis vezes, sem alteração da atividade da ALT renal e LDH hepática. Ainda, a exposição ao mercúrio aumentou significativamente a atividade da G6Pase em 75%. Os outros dois parâmetros, glicose e glicogênio, não foram alterados. A pré-exposição ao zinco preveniu a alteração da atividade da ALT e parcialmente a alteração da atividade da G6Pase hepática induzida pelo mercúrio. Os resultados in vitro demonstraram que as enzimas ALT e LDH sérica e hepática e G6Pase hepática e renal foram inibidas por mercúrio. O efeito inibitório pode estar relacionado às modificações químicas de grupos sulfidrílicos da cisteína, uma vez que o mercúrio tem grande afinidade por esses grupos, o que contribui para a sua toxicidade. O zinco inibiu a atividade da ALT hepática e sérica na concentração de 100 μM. Estes resultados mostram que o mercúrio induziu alterações distintas sobre essas enzimas quando testado in vivo e in vitro, bem como quando testado em enzimas provenientes de diferentes fontes, hepática e renal. O aumento da atividade das enzimas ALT e G6Pase de fígado sugerem que os animais expostos ao mercúrio apresentam um aumento da atividade gliconeogênica. O zinco previne os efeitos in vivo do mercúrio sobre as alterações metabólicas, confirmando seu papel protetor.

Submitted by Luciana Ferreira (lucgeral@gmail.com) on 2014-11-07T10:55:53Z No. of bitstreams: 2 Dissertação - Mirian de Sylvio - 2009.pdf: 865608 bytes, checksum: bba24a89ef1938c31376520a3eff1e60 (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) / Approved for entry into archive by Luciana Ferreira (lucgeral@gmail.com) on 2014-11-07T11:29:38Z (GMT) No. of bitstreams: 2 Dissertação - Mirian de Sylvio - 2009.pdf: 865608 bytes, checksum: bba24a89ef1938c31376520a3eff1e60 (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) / Made available in DSpace on 2014-11-07T11:29:38Z (GMT). No. of bitstreams: 2 Dissertação - Mirian de Sylvio - 2009.pdf: 865608 bytes, checksum: bba24a89ef1938c31376520a3eff1e60 (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) Previous issue date: 2009-12-15 / Infection with Toxoplasma gondii occurs throughout the globe, with a prevalence of up to 90% in the population. The physiological changes caused by this parasite are well studied in immunocompromised individuals and in cases of congenital transmission. In immunocompetent individuals the infection is usually asymptomatic and little explored by researchers. Experimental studies follow the pattern of human studies, and there fow mention about the biochemical changes (liver and kidney metabolisms) in the host infected by T. gondii. This study aimed the quantification of hepatic and kidney alterations caused by acute infections by T. gondii (non cystogenic strain – RH) and by chronic infections (cystogenic strain – ME-49). The control group was formed by mice without infection, only submitted to saline stress. Several enzymes were measured in serum and peritoneal exudate of mice infected and control such as: aspartate aminotransferase (AST), alanine aminotransferase (ALT), glutamyltransferase (GGT), alkaline phosphatase (ALP), urea, creatinine and lactate dehydrogenase, using an automated methodology. AST and ALT presented a significative difference in the serum of mice infected with RH strain when compared to controls indicating a destruction of liver cells. The peritoneal exudates did not present significative changes in relation to controls nor did the urea and creatinine levels. The séric lactate dehydrogenase showed gradual changes in all days of the infection in mice peritoneal exudates as early as this change was evident only in the fifth day of infection. All samples of the group infected with ME-49 strain showed changes in serum and peritoneal exudate during all days of analysis. Only ALT peritoneal exudates showed no change during all days of analysis. An increase in urea at all doses was observed, however, creatinine showed a change only within 120 days of infection. The LDH was altered in the serum in all days of analysis. In conclusion, the T. gondii infection may cause hepatic and kidney injuries either when caused by non-cystogenic as by cystogenic strains of the parasite. / A infecção pelo Toxoplasma gondii ocorre em todo o mundo, com prevalência de até 90% na população conforme seus hábitos culturais e condições socioeconômicas. As alterações fisiopatológicas provocadas por este parasito são muito estudadas nos indivíduos imunocomprometidos, nos casos de transmissão congênita, e nos indivíduos imunocompetentes a infecção é, geralmente, assintomática e pouco explorada pelos pesquisadores. Experimentalmente, os estudos seguem o padrão dos estudos humanos, e há pouca referência sobre as alterações bioquímicas (hepáticas e renais) no hospedeiro infectado pelo T. gondii. Este trabalho objetivou avaliar as alterações hepáticas e renais causadas por esse parasito em camundongos na fase aguda, usando a cepa não cistogênica (RH), e na fase crônica, com a cepa cistogênica (ME-49), tendo como controles camundongos sem infecção, somente submetidos ao estresse de inoculação com salina. Foram dosadas no soro e no exsudato peritoneal dos camundongos infectados e controles os níveis das enzimas Aspartato aminotransferase (AST), Alanina aminotransferase (ALT), Gamaglutamiltransferase (GGT), Fosfatase alcalina (FAL), desidrogenase lática (DHL) e dos seguintes compostos: uréia e creatinina, por metodologia automatizada. As enzimas AST e ALT apresentaram diferença significativa no soro de camundongos infectados com cepa RH, demonstraram alterações em relação aos controles indicando uma destruição das células hepáticas. No exsudato peritoneal não foram demonstradas alterações em relação aos controles. A uréia e creatinina dosadas não demonstraram alteração significativa. A enzima lactato desidrogenase sérica apresentou alterações gradativas em todos os dias de infecção do camundongo no soro, já no exsudato peritoneal essa alteração foi evidenciada somente no quinto dia da infecção, mostrando que com o aumento de parasitos e a destruição celular causada por esse, essa enzima presente em várias células é responsável por demonstrar aumentos consideráveis. Todas as amostras de soro analisadas do grupo infectado com a cepa ME-49 demonstraram alterações durante todo período de acompanhamento. Enquanto que no exsudato peritoneal não mostrou nenhuma alteração durante todo período analisado. Houve aumento crescente na uréia em todos os dias de analises, porém, a creatinina não apresentou nenhuma alteração. A LDH mostrou-se alterada no soro em todos os dias de analisado. Conclui-se que a infecção pelo T. gondii pode provocar alterações hepáticas e renais ao longo do curso de infecção, tanto em infecções com cepa cistogênica quanto com cepa não cistogênica.

The thesis describes structural and functional studies of two PLP-dependent enzymes, diaminopropionate (DAP) ammonia lyase (DAPAL) and N-acetylornithine aminotransferase (AcOAT). The main objective of this work was to understand the structural features that control and impart specificity for PLP-dependent catalysis. DAPAL is a prokaryotic enzyme that catalyzes the degradation of D and L forms of DAP to pyruvate and ammonia. The first crystal structure of DAPAL was determined from Escherichia coli (EcDAPAL) in holo and apo forms, and in complex with various ligands. The structure with a transient reaction intermediate (aminoacrylate-PLP azomethine) bound at the active site was obtained from crystals soaked with substrate, DL-DAP. Apo and holo structures revealed that the region around the active site undergoes transition from disordered to ordered state and assumes a conformation suitable for catalysis only upon PLP binding. A novel disulfide was found to occur near a channel that is likely to regulate entry of ligands to the active site. Based on the crystal structures and biochemical studies, as well as studies on active site mutant enzymes, a two base mechanism of catalysis involving Asp120 and Lys77 is suggested. AcOAT is an enzyme of arginine biosynthesis pathway that catalyses the reversible conversion of N-acetylglutamate semialdehyde and glutamate to N-acetyl ornithine and α-ketoglutarate. It belongs to subgroup III of fold type I PLP dependent enzymes. Many clinically important aminotransferases belong to the same subgroup and share many structural similarities. We have carried out extensive comparative analysis of these enzymes to identify the unique features important for substrate specificity. Crystal structures of AcOAT from Salmonella typhimurium were determined in presence of two ligands, canaline and gabaculine, which are known to act as general inhibitors for most of the enzymes of this class. There structures provided important insights into the mode of binding of the substrates. The structures illustrated the switching of conformation of an active site glutamate side chain on binding of the two substrates. In addition to that, structural transitions involving three loop regions near the active site were observed in different ligand bound structures. Kinetics of single turnover fast reactions and multiple turnover steady state reactions indicated that N-AcOAT dimer might follow a mechanism involving sequential half site reactivity for efficient catalysis. The changes observed in loop conformation that resulted in asymmetric forms of the dimer enzyme might form the structural basis for half site reactivity. Single site mutants were designed to understand the significance of these structural transitions and the specific role of active site residues in determining substrate specificity and catalysis. Biochemical characterization of wild type and mutant enzymes by steady state and fast kinetic studies, along with their crystal structures provided detailed insights into subtlety of active site features that manifest substrate specificity and catalytic activity. The thesis also describes the investigations on fold type II enzymes directed towards analyses of polypeptide folds of these enzymes, features of their active sites, nature of interactions between the cofactor and the polypeptide, oligomeric structure, catalytic activities with various ligands, origin of specificity and plausible regulation of activity. Analysis of the available crystal structures of fold type II enzymes revealed five different classes. The dimeric interfaces found in these enzymes vary across the classes and probably have functional significance. Contributions made towards structural and functional studies of three other PLP-dependent enzymes, serine hydoxymethyltransferase (SHMT), D-serine deaminase (DSD) and D-cysteine desulfhydrase (DCyD) are described in an appendix.