Direct Analysis in Real Time (DART) ionization/mass spectrometry allows for the high throughput analysis of a wide range of materials including but not limited to: solids, liquids, powders, tablets, and plant materials. The ability to detect cocaine was established in a reproducible manner with the use of a DART ionization source (IonSense Inc., Saugus, MA) interfaced to a modified single quadrupole mass spectrometer. Development of a methodology for the detection of cocaine within contrived street quality drug mixtures involved the optimization of the ionization source, sample introduction mechanism, ion guide, and mass analysis parameters. An analytical method was created that utilized ionized helium carrier gas heated to 300°C and an automated sample introduction apparatus consisting of a Linear Rail Enclosure that holds consumable QuickStrip^TM sample cards. Ionized molecules were then fragmented by manipulation of voltage levels within the ion guide to gain more structural information prior to detection by a single quadrupole mass spectrometer. Cocaine was detected by the modified DART/MS analytical platform and gave two peaks within the mass spectrum at m/z 304 and 182. Optimization of in-source fragmentation by manual adjustment of the skimmer focus voltage allowed for the reproducible fragmentation of cocaine and the ability to increase or decrease the amount of fragmentation seen between the two peaks detected for cocaine. With the use of fragmentation, this analytical platform can be classified as a Category A technique as defined by the Scientific Working Group for the Analysis of Seized Drugs. The robust detection of cocaine was demonstrated for reference samples at concentrations as low as 10 ng/μL (50 ng) with high signal abundance greater than ten times the signal to noise ratio. Furthermore, the detection of cocaine at 10 ng/μL was demonstrated for multi component mixtures of up to 14 additional components containing common adulterants and diluents found within street quality samples. In total, 25 common excipients were tested using the same method parameters as optimized for cocaine analysis. Of these 25 excipients tested, five were not detected in positive ion mode (one could be detected in negative ion mode). Of the twenty excipients that could be detected by mass spectrometry, two pairs of excipients (levamisole/tetramisole and creatine/creatinine) could not be differentiated from each other. There were no excipients tested that had equivalent m/z values as those of cocaine. Experimentation into the effects of various excipients at multiple concentrations on the abundance of the two cocaine peaks was performed. Regardless of excipient amount (up to 10 times more concentrated than cocaine) and the number of components (up to 15 total components) the ratio of abundance between the m/z 304 to 182 peaks did not vary greater than 22% relative standard deviation. A match criteria protocol was developed for the ability of an analyst to confirm the presence of cocaine within unknown forensic case samples that have previously tested positive for the presumptive identification of cocaine. The identification of cocaine was based on various factors such as the signal to noise ratio at m/z 304 and 182, the ratio of abundance between those two peaks as well as positive and negative controls. This match criteria protocol was utilized for 25 double blind mock forensic casework samples was performed. Determination for the presence of cocaine within these unknown samples gave an analyst error rate of 0%, with no false positives or false negatives predicted. To further aid human interpretation and identification of compounds within mixtures, the advanced chemometric software, Analyze IQ, was utilized. Development of predictive classification models using a combination of pre-processing steps, principle component analysis and machine learning techniques was achieved. Models were built using 381 unique samples for the purposes of identifying the presence of cocaine within unknown samples. Of all methods available within the Analyze IQ software, the optimization of a model using principle component analysis with support vector machine regression with a radial basis function kernel yielded an initial error rate of 0% for 72 samples tested. Furthermore, of the samples tested against the model, 20 samples were comprised of excipients that were not incorporated into the initial model development process. The inclusion of these samples (10 spiked with cocaine, 10 absent of cocaine), shows that predictive modeling based software can provide an accurate, robust, and evolving approach to the identification of cocaine within sample compositions that have not previously been tested and stored in a database of known reference samples. Predictive modeling has advantages over current mass spectral libraries, which are limited to the identification of pure compounds. To further test the abilities of predictive models, optimized machine learning models were applied to 25 double blind mock forensic casework samples. The predictive modeling error rate was identical to the human interpretation rate for the double blind mock casework samples with a 0% error rate. Using the DART/MS analytical platform, 25 mock forensic casework samples along with positive and negative controls were analyzed and identified for the presence of cocaine within 30 minutes. On the order of 15 to 30 times faster than modern GC/MS and LC/MS methods, the ability to analyze and identify samples faster would allow for an increase in samples being processed on a daily basis and allow for the reduction of case backlogs that currently plague controlled substances sections of forensic science laboratories throughout the United States.

L'édition collaborative en temps réel permet à plusieurs utilisateurs d'éditer un même document simultanément grâce à des outils informatiques. Les applications d'édition collaborative en temps réel répliquent les données éditées chez chaque utilisateur, pour garantir une édition des données réactive et possible à chaque instant. Les conflits d'édition sont fréquents, et doivent être gérés automatiquement par l'application. L'application doit faire converger toutes les répliques vers un document commun, qui contient toutes les modifications exprimées par tous les utilisateurs. Les algorithmes actuels fonctionnent de manière satisfaisante pour des types de données simples et des possibilités d'édition minimes. Lorsque le document est plus complexe (document XML, texte structuré), ou qu'il peut être édité avec un ensemble élargi d'opérations (déplacement de texte, styliser du texte), lors de la résolution de conflits d'édition, les algorithmes échouent à proposer un contenu qui convienne aux utilisateurs. Les intentions des utilisateurs ne sont pas respectées. L'objectif de cette thèse est de proposer des algorithmes d'édition collaborative en temps réel qui respectent mieux les intentions des utilisateurs que les algorithmes actuels.Pour cela, nous étudions deux approches de la littérature nommées transformées opérationnelles et modèles de données répliquées commutatives, et montrons comment il est possible d'attribuer plus de sémantique aux opérations de base des algorithmes d'édition collaborative, ce qui permet aux utilisateurs d'exprimer avec plus de moyens leurs intentions, et aux algorithmes de résoudre plus efficacement les conflits d'édition / Real-time collaborative editors, like GoogleDocs or Etherpad, allow the simultaneous edition of a document by several users. These applications need to replicate the edited document, for the so called real-time purpose of permitting a fast and reactive editing by any user at any time. Editing conflicts frequently occur, and must be automatically handled by the application, in order to provide every users with the same copy of the document, containing every modifications issued. Most of current real-time collaborative editing algorithms were designed for simple data structures, like linear text, and simple editing ways, like inserting or removing a character only. These algorithms fail to offer an appropriate editing conflict resolution when used with a complex data structure, like XML, or with complex operations, like moving some text or adding some style. Copies are the sames but users' intentions are not preserved. The goal of this thesis is to design new real-time collaborative editing algorithms that ensure a better preservation of users' intentions. The first contribution of this thesis is an algorithm based on the Operational Transformation approach (OT). Our contribution is designed to handle rich text document (with stylized text and paragraphs) and to preserve the intentions of a set of high editing level operations (add style, merge paragraphs...). The second contribution uses the Commutative Replicated Data Types approach (CRDT), and offers an algorithm which preserves the update intention, while improving global performance of the approach when dealing with large blocs of data

Dans le cadre d'une thèse CIFRE conjointe entre le Loria et Thales Research & Technology, nous étudions un nouveau type de réseau maillé embarqué temps réel. La mise en réseau maillé des composants des systèmes embarqués concilie les contraintes temps réel des applications avec leurs besoins croissants en termes de bande passante et collaboration. La pluralité des chemins de communication résulte en de meilleures propriétés de flexibilité, résilience, passage à l'échelle et répartition de charge. Cependant, ceci nécessite d'être capable d'allouer dynamiquement les ressources réseau en fonction des besoins des applications. Notre approche consiste à permettre aux applications de faire des requêtes de flux temps réel à l'exécution, puis allouer dynamiquement les ressources correspondant aux besoins en communication. A cette fin, nous avons conçu l'architecture Software-Defined Real-time Networking (SDRN). Elle aborde en même temps les problématiques d'isolation des flux, analyse temporelle, routage, tolérance aux fautes, ainsi que les interfaces avec les couches applicatives et les couches basses du système. Elle est également modulaire, c'est-à-dire que certaines parties de l'architecture peuvent être remplacées sans remettre en cause les autres modules. Enfin, elle a été validée par une implémentation sur plateforme matérielle RapidIO. Ce document restitue les travaux de recherche sur SDRN. Il s'intéresse également à la problématique de l'expérimentation sur les réseaux embarqués et propose une approche originale d'expérimentation, ERICA. Cette approche facilite la mise en place d'expérimentations mêlant aspects réels et simulés. ERICA génère les fichiers nécessaires à la mise en place du scénario défini dans une interface graphique haut niveau. Elle permet ainsi au chercheur d'appliquer une réflexion haut niveau sur ses expérimentations et de réutiliser les couches communes à plusieurs scénarios d'expérimentation / We are studying a new kind of embedded real-time mesh network. Mesh networking of the components of embedded systems reconciles their real-time constraints with the new application needs in terms of bandwidth and tight interactions. The plurality of communication paths results in increased flexibility, resilience, scalability and load balancing characteristics. However, this requires the ability to dynamically allocate network resource with respect to the needs of running applications. Our approach is to allow applications to make online real-time flow resource requests and consequently allot network resources according to these requirements. To this end, we have designed the Software-Defined Real-time Networking (SDRN) architecture. It addresses flow isolation, timing analysis, routing, fault tolerance, as well as the interfaces with the application layer and the lower layers of the system. It also allows any module to be replaced without interfering with the remainder of the architecture. It has been validated via an implementation on an in-silicon RapidIO platform. This thesis describes our research on the SDRN architecture. It also proposes an original method for experimenting on embedded networks, ERICA. The ERICA framework automatically generates all what is needed to conduct a network experiment in a selected environment (such as a simulator or a testbed), with both physical and simulated aspects. Hence, it allows the researcher to perform a high-level thinking of the whole experimentation process and to reuse applications and experiment designs from an experimentation stack to another

INTRODUÇÃO: Em grandes cidades, como São Paulo, a pequena porcentagem de matas existentes é representada pelos parques municipais. Estas áreas, além de representarem ambientes de lazer para as pessoas, albergam uma enorme diversidade biológica, desde mosquitos até aves e mamíferos. A interação destas espécies favorece a circulação de Flavivirus, causadores de importantes doenças humanas, que têm nas aves um importante reservatório. Atribui-se às aves migratórias o papel de carreadoras dos vírus, já que as mesmas percorrem longas distâncias para completar seu ciclo biológico. A chegada de aves do Hemisfério Norte ocorre em alguns Parques, o que favoreceria a dispersão de alguns vírus, como o Vírus do Nilo Ocidental, já que nestas áreas estão presentes mosquitos potencialmente vetores. OBJETIVOS: identificar infecção por Flavivírus nas aves dos parques municipais de São Paulo. MÉTODOS: De Março de 2012 a Janeiro de 2013, foram coletadas amostras de swab de cloaca, orofaringe e sangue de aves capturadas em redes de neblina de duas áreas do município de São Paulo: Parque Anhanguera e Fazenda Castanheiras/APA Bororé Colônia. As aves foram anilhadas e liberadas após a coleta do material. Foi realizada técnica de RT-PCR em tempo real, utilizando iniciadores genéricos que amplificam fragmento do gene NS5 de Flavivirus. Amostras positivas foram encaminhadas para sequenciamento. RESULTADOS: Foi capturado um total de 231 aves, em sua maioria da Ordem Passeriformes. De um total de 463 amostras, nenhuma amostra apresentou presença de RNA viral. DISCUSSÃO: Em se tratando de alguns Flavivírus, os passeriformes são considerados os reservatórios mais competentes no ciclo de transmissão, pois atingem altos níveis de viremia. Cabe ressaltar que algumas espécies desta ordem, de ocorrência na cidade de São Paulo, já foram identificadas como portadoras dos vírus Rocio e Ilhéus. A ausência de positividade é esperada, pois embora altamente sensível, a técnica de PCR depende do estado de viremia das aves, que é curta. CONCLUSÃO: Os parques municipais são áreas que aproximam aves, mosquitos e humanos, pelo papel ambiental e de lazer que os mesmos representam. Este fato classifica estas áreas como locais com potencial de transmissão de Flavivirus, o que torna importante a continuação este estudo, aumentando as áreas de abrangência, para conhecer os Flavivírus circulantes e realizar vigilância para vírus que podem ocasionar problemas de Saúde Pública / INTRODUCTION: In big cities, as São Paulo, the little percentage of existing forests is represented by the municipal parks. These áreas, besides acting as entertainment environments to the users, promote a huge biodiversity, including mosquitoes, birds and mammals. These species interaction promotes Flavivirus circulation, viruses responsible for important human diseases. The avian species are important reservoirs for these viruses, specially the migrating birds that can fly for long distances, carrying these viruses to several areas. In some parks, the arrival of migrating birds from the North Hemisphere is documented, fact that can support some viruses dispersion, for example, the West Nile Vírus, considering that in these areas potencial vector for this virus can be found. OBJECTIVES: detect Flavivirus infection in birds captured in municipal parks of São Paulo city. METHODS: from March, 2012 to January, 2013, oropharyngeal and cloacal swabs, and blood samples were collected from birds captured in mist-net webs located in two municipal areas: Anhanguera Park and Castanheiras Farm/APA Bororé Colônia. The birds were ringed and released after samples collection. The real time RT-PCR was performed, using generic primers which amplify NS5 gene fragment. Positive samples were forwarded to sequence analysis. RESULTS: a total of 231 birds were capture, in which the majority belongs to Passeriforms order. Of 463 samples collected, all samples were negative for the viral RNA presence. DISCUSSION: when talking about Flaviviruses, the passeriforms are considered the most competent reservoirs in the transmission cycle, because they can achieve great viremia levels. Some passeriforms species, endemic in São Paulo city, were identified as Rocio and Ilhéus viruses carriers in previous studies. The negativity is expected, once the Real Time RT-PCR, although highly sensitive, depends on the viremia duration, which is short in avian species. CONCLUSION: the public parks are areas which encloses birds, mosquitoes and the human being, for the environmental and entertainment role they play. This fact classifies these parks as areas with great potencial of Flavivirus transmission, ressalting the great importance to continue this study, increasing the number of areas, to detect the circulating Flavivirus and to perform surveillance for viruses which can cause public health problems

A significativa prevalência da infecção pelo HTLV-1/2 no Brasil tornou compulsória a triagem sorológica em bancos de sangue desde 1993. A realização de um diagnóstico eficaz e seguro desta infecção tem importância no correto aconselhamento dos pacientes, bem como na adoção de medidas preventivas em relação à transmissão do HTLV-1/2. Entretanto, a ineficiência dos testes confirmatórios disponíveis somado ao alto custo, são fatores limitantes para a conclusão segura do status clínico do paciente. O objetivo deste trabalho foi desenvolver, padronizar e validar uma plataforma molecular (NAT) multiplex utilizando a metodologia de PCR em tempo real para o diagnóstico confirmatório e discriminatório da infecção pelo HTLV-1/2. Para tanto, foi padronizada a PCR em tempo real utilizando o sistema de sondas de hidrólise (TaqMan®) e a região gênica viral pol foi utilizada como alvo dessas reações. As reações foram otimizadas e validadas em amostras de DNA de controles positivos e negativos, amostras de DNA obtidas a partir do sangue total de indivíduos infectados pelo HTLV-1/2, candidatos à doação de sangue e de pacientes infectados por outras viroses (HIV, HBV e HCV). Após a padronização, a plataforma molecular foi validada em relação aos seguintes parâmetros: sensibilidade analítica, sensibilidade diagnóstica, especificidade analítica, especificidade diagnóstica, precisão e robustez. O limite de detecção do teste (LoD) foi de 3,85 cópias/reação para HTLV-1 e 10,88 cópias/reação para HTLV-2. Para a especificidade, não foi observada reação cruzada com os vírus HAV, HBV, HCV, HIV-1 e HIV-2 e B19V obtidos a partir de um painel de referência viral e nem com amostras de indivíduos portadores de HIV, HBV ou HCV. A sensibilidade diagnóstica foi de 94,6% para HTLV-1 e 78,6% para HTLV-2. O coeficiente de variação encontrado no parâmetro precisão foi de até 0,475%. A metodologia desenvolvida é uma ferramenta simples, de baixo custo, sensível e altamente específica, portanto, adequada para detecção e discriminação da infecção por este retrovírus. A padronização desta plataforma tem um importante impacto no fortalecimento da capacitação tecnológica nacional. Além disso, propõe seu uso no algoritmo diagnóstico, o qual permitirá a conclusão segura do diagnóstico do HTLV-1/2. / The significant prevalence of HTLV-1/2 infection in Brazil has turned the serological testing for this virus mandatory in national blood banks since 1993. The performance of efficient and safe diagnosis of this infection has importance on the correct counseling of the patients and the prevention of the transfusion/hemoderivatives transmitted HTLV-1/2 infection. However, the inefficiency of the available confirmatory tests combined with their high cost present limiting factors for adequate conclusions over the clinical status of the patient. A safe diagnosis of the HTLV-1/2 infection is of crucial importance for the correct counseling of the patients and prevention of the transmission of the infection by blood transfusions, breastfeeding and solid organ transplantations. Therefore, the objective of this study was to develop, optimize and validate a molecular multiplex platform (NAT) utilizing the real-time PCR methodology for confirmatory and discriminatory diagnosis of the HTLV-1/2 infection. DNA samples obtained from HTLV-1/2 positive patients, blood donor candidates, and HIV, HBV and HCV infected patients were used in this study. The real-time PCR was optimized using the TaqMan® system (hydrolysis probes) and the pol gene was a target for real-time amplification. After optimization, the molecular platform was validated by analysis of the analytic and diagnostic sensitivity, analytic and diagnostic specificity, precision, and robustness. The detection limit (LoD) of the test was 3.85 copies/reaction for HTLV-1 and 10.88 copies/reaction for HTLV-2. Evaluation of the specificity did not demonstrate cross reaction with human viruses like HAV, HBV, HCV, HIV-1, HIV-2 and B19V obtained from a diagnostic panel and also with samples obtained from HIV, HBV or HCV positive individuals. The diagnostic sensitivity was 94.6% for HTLV-1 and 78.6% for HTLV-2. The estimated variation coefficient of the precision analysis was not more than 0.475%. Therefore, this methodology presents simple, inexpensive, sensitive and highly specific test, and can be used adequately for the detection and discrimination of this retroviral infection. The optimization of this molecular platform have important impact on the improvement of the technologic capability and it can be used for the definition of a national diagnostic algorithm which will permit a safe conclusion of the HTLV-1/2 diagnosis.

O cultivo de células humanas para fins experimentais e terapêuticos se firmou como um dos pilares da biologia celular e tem se tornado uma prática laboratorial cada vez mais disseminada. Associada a esse processo está a contaminação por microrganismos, dentre os quais se destacam as bactérias do gênero Mycoplasma spp., os quais são os contaminantes detectados com maior frequência in vitro. Um dos pontos críticos no processo de garantia da qualidade, pureza e segurança para uso destas células é a adoção de uma metodologia analítica, para detecção de Mycoplasma spp., que seja simples e de rápida execução, com sensibilidade e especificidade adequada e economicamente viável. O objetivo desse trabalho foi desenvolver uma plataforma molecular (PCR em tempo real) para detecção de Mycoplasma spp. em culturas celulares. Para tanto, foram testados diversos conjuntos de primers (gene 16S rDNA) dentre os quais um foi selecionado para a plataforma molecular. Foram utilizadas amostras de DNA obtidas a partir do sobrenadante de cultura. A PCR em tempo real in house foi padronizada utilizando o intercalante fluorescente de DNA dupla fita BRYT Green® e produziu um fragmento de 270 pares de bases. A temperatura de melting para as amostras positivas foi definida no intervalo de 81 a 84°C. A plataforma molecular foi validada por meio dos parâmetros sensibilidade analítica e diagnóstica, especificidade analítica, potencial de arraste, precisão e robustez. O limite de detecção do teste (LOD) foi de 5 cópias/5 ?L. Para a especificidade, foi observada reação cruzada com bactérias de relação filogenética próxima e com DNA de célula humana. A sensibilidade diagnóstica foi de 100%. Não foi houve contaminação por arraste. O coeficiente de variação encontrado no parâmetro precisão foi de 0,64% e 1,80% para a avaliação intra-ensaio e inter-ensaio, respectivamente. O coeficiente de variação da análise robustez foi de 5,42%. Ao comparar a plataforma molecular com o teste comercial, observou-se que 29,85% (n=40) das amostras apresentaram resultados falso-negativos pelo teste comercial. Determinou-se ainda que a PCR em tempo real in house foi mais sensível do que o teste comercial. A análise por microscopia eletrônica de varredura demonstrou a presença de estruturas sugestivas de espécies de Mycoplasma spp. na superfície das células. A análise filogenética permitiu a classificação das espécies encontradas. Os resultados obtidos neste trabalho permitiram propor o algoritmo para aplicação de um método de detecção simples e rápido para Mycoplasma spp.; e fazer deste uma ferramenta para o controle de qualidade das células cultivadas, garantindo a eficiência destas células para uso em pesquisa e maior segurança para uso em terapia celular. / The culture of human cells for experimental and therapeutic purposes has been consolidated as one of the foundations of cell biology and has increasingly become a widely used laboratory practice. The contamination by microorganisms is associated with this process, among them we can highlight bacteria of the genus Mycoplasma spp., which are contaminants more frequently detected in vitro. One of the critical points in the process of assuring quality, purity, and safety for the use of these cells is the adoption of an analytical methodology for the detection of mycoplasma that is simple and fast to conduct, with proper sensitivity and specificity and that is also economically viable. The objective of this work was to develop a molecular platform (real time PCR) for the detection of mycoplasmas in cell cultures. Therefore, we tested several sets of primers (16S rDNA gene), among them one was selected for the molecular platform. DNA samples used were obtained from the culture supernatant. In house real time PCR was standardized using BRYT Green® double-stranded DNA intercalating fluorescent and produced a fragment of 270 pair bases. The melting temperature for the positive samples was set in the range 81 to 84°C. The molecular platform was validated through the parameters: analytical and diagnostic sensitivity, analytical specificity, carry-over contamination, precision and robustness. The limit of detection of the test (LOD) was 5 copies/5 ?L. For specificity, it was observed a cross reaction with bacteria of close phylogenetic relationship and with human cell DNA. Diagnostic sensitivity was 100%. There was no carry-over contamination. The coefficient of variation was found in the precision values of 0.64% and 1.80% for intra-assay and inter-assay assessment, respectively. The variance coefficient of the robustness analysis was 5.42%. By comparing the molecular platform with the commercial test, we observed that 29.85% (n=40) of the samples showed false negative results by the commercial test. It has been determined further that the real-time PCR in house was more sensitive than the commercial test. The analysis by scanning electron microscopy demonstrated the presence of suggestive structures of Mycoplasma spp. species in the surface of cells. Phylogenetic analysis allowed the classification of the species found. The results obtained in this work allowed us to propose the algorithm for application of a simple and fast method for mycoplasma detection and making from this tool for quality control for cultured cells, assuring the efficiency of these cells for use in research and greater safety for use in cell therapy more safety to patients subjected to cell therapy.

Natural matte extraction is a difficult and generally unsolved problem. Generating a matte from a nonuniform background traditionally requires a tediously hand drawn matte. This thesis studies recent methods requiring the user to place only modest scribbles identifying the foreground and the background. This research demonstrates a new GPU-based implementation of the recently introduced Fuzzy- Matte algorithm. Interactive matte extraction was achieved on a CUDA enabled G80 graphics processor. Experimental results demonstrate improved performance over the previous CPU based version. In depth analysis of experimental data from the GPU and the CPU implementations are provided. The design challenges of porting a variant of Dijkstra's shortest distance algorithm to a parallel processor are considered. / by Joel Gibson. / Thesis (M.S.C.S.)--Florida Atlantic University, 2008. / Includes bibliography. / Electronic reproduction. Boca Raton, Fla., 2008. Mode of access: World Wide Web.

Respiratory diseases in cattle can cause economic losses due to the decreased dairy and meat production. Virus is the main reason for these diseases. Symptoms can be fever, cough and nasal discharge.     Influenza are a group of viruses belonged in the Ortomyxoviridae family. The big influenza groups are influenza A, B and C. The viruses can cause respiratory signs, and mammals can be affected. Recently a new influenza virus was found in the United States. The influenza virus was found in swine, but the natural host was later considered to be cattle. The virus was named influenza D. Different studies worldwide have confirmed the virus in a variety of regions. Antibodies have also been reported.     In this study, virologic and serologic methods were used to detect if influenza D circulates among cattle in Sweden. The serologic method performed was indirect ELISA. Serum and milk samples were investigated in the ELISA method. For the virologic detection a real-time RT-PCR was made, with a variety of study material.     Antibodies against influenza D were found in both serum and milk samples. No virus was found in the real-time RT-PCR. In Sweden the animal keeping is different compared to several other nations. For instance, the conditions of health and hygiene are better in Sweden, this may be an important cause of a system more resistant against spreading of infections. Influenza D could be more common in Sweden, but in that case further researches are needed to determine the prevalence.

A presente pesquisa realizou o estudo da confiabilidade aplicado à otimização da operação em tempo real de sistemas de abastecimento de água (SAA). Almeja-se que a otimização da operação em tempo real empregue técnicas que a tornem robusta, ou seja, que considerem as incertezas inerentes a um SAA real. Para tanto, é necessário associar ao modelo de otimização um previsor de demanda e um simulador hidráulico. O previsor produzirá estimativas de demandas futuras para o horizonte desejado, o qual alimentará o simulador, a fim de que sejam determinadas as estratégias operacionais otimizadas para atendimento das demandas previstas. Implementou-se o método de otimização AMALGAM (\"A Multialgorithm Genetically Adaptive Method\"), juntamente com as demais rotinas computacionais necessárias para integrar o simulador hidráulico (EPANET 2) e o previsor de demanda baseado na Rede Neural Dinâmica (DAN2). O modelo desenvolvido foi aplicado nos setores de abastecimento Eliana, Iguatemi e Martinez, os quais são operados pelo Departamento Autônomo de Água e Esgotos (DAAE) da cidade de Araraquara, SP. Os modelos das redes de água foram calibrados por meio de dados de vazão e carga de pressão coletados em campanhas de campo. As estratégias operacionais resultantes foram comparadas as operações praticadas pelo DAAE, resultando em reduções no custo do consumo de energia de 14%, 13% e 30% para os setores Eliana, Iguatemi e Martinez, respectivamente. / This research project proposes the study of reliability applied to real time optimization of operation of water supply network (WSN). It is desired to obtain robust real time optimization of operation through the use of adequate techniques which accounts the inherent uncertainty of a real WSN. To accomplish the task it is necessary to associate to the optimization model a demand forecaster and a hydraulic simulator. The forecaster will produce the future demand for the planning horizon to serve as input for the simulator, so it is possible to obtain the optimized operation to meet the predicted demand. It was implemented the AMALGAM (\"A Multialgorithm Genetically Adaptive Method\") to serve as optimization model as well as the necessary computational routine to link the EPANET hydraulic simulator as well as the demand forecaster based on DAN2. The developed model was applied to the sectors Eliana, Iguatemi and Martinez, which are part of the water system operated by the Autonomous Department of Water and Sewer (DAAE) of Araraquara, SP. The water network model was calibrated using data collected on field campaign to gather pressure and flow data. The optimized operation was compared to the operation from DAAE, resulting in reduction of energy consumption cost of 14%, 13% and 30% respectively for the sectors Eliana, Iguatemi and Martinez.

O Brasil é o maior produtor mundial de feijão com produção média anual de 3,5 milhões de toneladas, entretanto, um dos maiores problemas enfrentados por essa cultura é o déficit hídrico, que leva a uma redução considerável em seu rendimento. Dessa forma, a identificação de genes que controlam os mecanismos de defesa e adaptação do feijoeiro à falta de água durante o seu desenvolvimento é de grande utilidade. E, como a tolerância à seca é um caráter multigênico, genótipos com diferentes graus de tolerância apresentam expressão gênica diferencial, com ativação e/ou repressão de determinados genes. Diante disso, esse trabalho teve como objetivos: (i) identificar genes diferencialmente expressos em dois genótipos de feijoeiro comum, sendo um tolerante (BAT 477) e o outro suscetível (IACCarioca 80SH) à seca; (ii) verificar a expressão gênica espacial (em raízes, caules e folhas) e temporal (cinco níveis crescentes de déficit hídrico - 24 h, 48 h, 72 h, 96 h e 120 h de exposição ao estresse) por meio de RT-qPCR; (iii) predizer a função dos genes identificados, com base nos genes ortólogos de Arabidopsis thaliana, usando dados públicos de microarranjo disponíveis na plataforma Genevestigator. Para atingir esses objetivos, foi conduzido um experimento em casa-de-vegetação, sendo induzido o déficit hídrico, por meio da suspensão da irrigação, quando as plantas atingiram o estádio fenológico R5, mantendo sob suprimento hídrico adequado as plantas-controle. Foi então utilizada a técnica de cDNA-AFLP para isolar os transcritos diferencialmente expressos entre os dois genótipos, sob seca, a qual aliada ao sequenciamento possibilitou a identificação e anotação de 45 transcritos, sendo 21 exclusivamente expressos no genótipo tolerante e 24 no genótipo suscetível. Dentre os transcritos identificados no genótipo tolerante, podem ser listados pelo menos 11, com potencial de serem usados para transformação genética (chlorophyll A-B binding protein, HSP40, HSP70, glycosyl hydrolase, serine/threonine protein kinase, trehalose-6-phosphate synthase, E3 ubiquitin ligase, fructose biphosphate aldolase, mediator complex subunit 13, aquaporin nodulin MTN-3-related e TCP transcription factor), e no genótipo suscetível, podem ser listados nove (coatomer protein complex, monoamine-oxidase A repressor R1, synaptobrevin, haloacid dehalogenase-like hydrolase, ADP-ribosylation factor, mTERF, serine protease S1C HtrA-related, legume lectin e SWI/SNF-related chromatin binding). Na análise de expressão gênica espacial e temporal, os transcritos mais promissores para uso em trabalhos futuros de transformação genética foram: aquaporin nodulin MTN3, E3 ubiquitin ligase, serine/threonine protein kinase, glycosyl hydrolase e HSP 70 protein, uma vez que tiveram uma expressão bastante pronunciada no genótipo tolerante. Através das análises in silico, baseadas nos genes ortólogos de A. thaliana, foram descobertos processos e vias metabólicas que podem estar envolvidos na resposta do feijoeiro comum ao déficit hídrico. Além disso, foram identificados genes associados com a tolerância à seca, corroborando os dados experimentais. Sendo assim, os resultados obtidos nesse trabalho fornecem o entendimento necessário ao desenvolvimento de ferramentas moleculares (marcadores para genes diferencialmente regulados) para serem utilizados em programas de melhoramento, bem como para informação genética básica na anotação funcional do genoma do feijoeiro e também para utilização desses genes candidatos em trabalhos de transformação genética para obtenção de plantas mais tolerantes à seca. / Brazil is the largest producer of common beans, with average annual production of 3.5 million tonnes; however, one of the biggest problems faced by this crop is drought, which leads to a considerable reduction in their yield. Thus, the identification of genes that control the defense mechanisms and adaptation of common bean to drought during its development is very useful. Drought tolerance is a multigenic character, so genotypes with different degrees of water deficit tolerance exhibit differential gene expression, with activation and/or repression of certain genes. Therefore, this study aimed to: (i) identify differentially expressed genes in two common bean genotypes, one tolerant (BAT 477) and other susceptible (IAC-Carioca 80SH) to drought, (ii) verify the spatial (root, stem and leaves) and temporal (five increasing levels of water deficit - 24 h, 48 h, 72 h, 96 h and 120 h of stress exposition) gene expression by RTqPCR (iii) predict the genes function, based on Arabidopsis thaliana orthologous genes, using available data in the public microarray platform Genevestigator. To achieve these objectives, an experiment was conducted in a green house, being induced water deficit, by withholding water when the plants reached growth stage R5, maintaining adequate water supply under the control plants. To isolate transcripts differentially expressed between the two genotypes under drought was used the cDNA-AFLP technique, which coupled with sequencing enabled the identification and annotation of 45 transcripts, 21 exclusively expressed in the tolerant genotype and 24 in the susceptible one. Among the transcripts identified in the tolerant genotype, may be listed at least 11, with potential to be used in genetic transformation (chlorophyll A-B binding protein, HSP40, HSP70, glycosyl hydrolase, serine/threonine protein kinase, trehalose-6-phosphate synthase, E3 ubiquitin ligase, fructose biphosphate aldolase, mediator complex subunit 13, aquaporin nodulin MTN-3-related and TCP transcription factor), and in the susceptible genotype, can be listed nine (coatomer protein complex, monoamine-oxidase A repressor R1, synaptobrevin, haloacid dehalogenase-like hydrolase, ADP-ribosylation factor, mTERF, serine protease S1C HtrA-related, legume lectin and SWI/SNF-related chromatin binding). In the spatial and temporal gene expression analysis, the transcripts that stood out for use in genetic transformation future studies were: aquaporin nodulin MTN3, E3 ubiquitin ligase, serine/threonine protein kinase, glycosyl hydrolase and HSP 70 protein, since it had an expression quite pronounced in the tolerant genotype. Through the in silico analysis, based on orthologous genes of A. thaliana, was discovered processes and metabolic pathways that may be involved in the common bean response to drought. In addition, we identified genes associated with drought tolerance, corroborating the experimental data. Thus, the present results provide the necessary understanding to develop molecular tools (markers for differentially regulated genes) to be used in breeding programs, as well as basic genetic information in the common bean functional genome annotation and also to use these candidate genes for genetic transformation to obtain drought-tolerant plants.