A Restauração de Imagens é uma técnica que possui aplicações em várias áreas, por exemplo, medicina, biologia, eletrônica, e outras, onde um dos objetivos da restauração de imagens é melhorar o aspecto final de imagens de amostras que por algum motivo apresentam imperfeições ou borramentos. As imagens obtidas pelo Microscópio de Força Atômica apresentam borramentos causados pela interação de forças entre a ponteira do microscópio e a amostra em estudo. Além disso apresentam ruídos aditivos causados pelo ambiente. Neste trabalho é proposta uma forma de paralelização em GPU de um algoritmo de natureza serial que tem por fim a Restauração de Imagens de Microscopia de Força Atômica baseado na Regularização de Tikhonov. / Image Restoration is a technique which has applications in several areas, e.g., medicine, biology, electronics, and others, where one of the goals is to improve the final appearance of the images of samples, that have for some reason, imperfections or blurring. The images obtained by Atomic Force Microscope have blurring caused by the interaction forces between the tip of the microscope and the sample under study. Moreover exhibit additive noise caused by the environment. This thesis proposes a way to make a parallelization on a GPU of a serial algorithm of which is a Image Restoration of Images from Atomic Force Microscopy using Tikhonov Regularization.

Adhesion between different objects is happening everywhere. Without it, simple procedures like walking or holding something in a hand or attaching a postage stamp would be impossible. The life itself depends on adhesion on all levels, starting from the interactions between the living cells. Adhesion between two substrates is a complex phenomenon, which at present is still not well understood. There are several factors determining the strength of adhesion: (i) molecular interactions at interface, (ii) mechanical properties of adhesive, and (iii) area of contact between adhesive and probing surface. Two surfaces are tacky when they possess the right balance between these factors. Controlling the adhesion of materials is important in many fields ranging from industrial purposes to biomedical applications and everyday usage. There is a demand for “smart” materials with integrated functionalities that make them responsive, switchable, biocompatible, anti-bacterial, more energy efficient, or autonomous. In particular, materials for such cutting-edge applications like cell culture, drug delivery, tissue engineering, biosensors, anti/biofouling, microfluidics, climbing robots, sport equipment and many others require adjustable/tuneable adhesive properties. Many efforts were directed towards fabrication of materials with either weak or strong adhesion depending on the field of application. However, design of “smart” surfaces with reversibly switchable/controllable adhesion is still a highly challenging task. Therefore, the thesis aims on design of smart polymeric materials with responsive / adaptive adhesion properties. For this, fabrication and investigation of two types of switchable polymer layers based on stimuli-responsive polymer brushes will be performed. The first group is dealing with thermoresponsive polymer brushes: poly-(N-isopropylacrylamide) and two types of biocompatible polyethylene glycol-based systems. These polymer layers undergo phase transition below and above LCST between hydrophilic and hydrophobic states. The second part of the work is related to solvent-responsive comb-like and block copolymer brushes consisted of hydrophilic PEG and hydrophobic PDMS biocompatible and biodegradable polymers.

<p>Ankyrin repeats (ARs) are polypeptide motifs identified in thousands of proteins. Many AR proteins play a function as scaffolds in protein-protein interactions which may require specific mechanical properties. Also, a number of AR proteins have been proposed to mediate mechanotransduction in a variety of different functional settings. The folding and stability of a number of AR proteins have been studied in detail by chemical and temperature denaturation experiments, yet the mechanic of AR proteins remain largely unknown. In this dissertation, we have researched the mechanical properties of AR proteins by using protein engineering and a combination of atomic force microscopy (AFM)-based single-molecule force spectroscopy and steered molecular dynamics (SMD) simulations. Three kinds of AR proteins were investigated: NI6C (synthetic AR protein), D34 (of ankyrin-R) and gankyrin (oncoprotein). While the main focus of this research was to characterize the response of AR proteins to mechanical forces, our results extended beyond the protein nanomechanics to the understanding of protein folding mechanisms.</p> / Dissertation

The study for surfaced-immobilized nucleic acid probes in nanometer region in response to hybridization and to discrimination ofdifferent target nuclei acids. The hairpin locked nucleic acid (LNA-HP) isselected to be the probe molecule, and target molecules include perfect complementary (PC) and single mismatch (1MM). The self-assembledLNA-HP molecular nanospot is successfully prepared by liquid phaseAFM (Atomic Force Microscope)-based nanolithography technique, then in situ hybridization is carried out by using different targets (PC/1MM).To obtain the information of structure change, we use AFM to analyze therelative heights in the process of hybridization. The experimental results point out that (1) the structure changes of surface probe molecules maycorrelate with the AFM signal when target sequence hybridizes to the probe, (2) miniaturization of the size of the nucleic acid probe may promote hybridization efficiency and enhance the discrimination between PC and 1MM. Studies on whether the different chemical impetus in solution can affect conformation of the human telomeric DNA of sequence is conducted. A human talomeric DNA composed of ( 5¡¦-TTAGGG-3¡¦:5¡¦-CCCTAA-3¡¦ ) repeats, with a 100-200 nt ( T2AG3 ) repetitive unit overhang at 3¡¦ ends is chosen. This extended single-stranded sequence is called G-rich DNA, which forms the special G-quadruplex structure in solution containing sodium ions or potassium ions. The single-stranded sequence composed of ( C3TA2 ) repetitive units called C-rich DNA displays the i-motif folded structure in the low pH environment. These biomimetic DNA¡¦s are thiol-modified to self-assemble on gold surfaces. Separate measurements with AFM (the molecular thickness and rootmean- square roughness of the self-assembly monolayer of DNA ) and CD( circular dichroism ) ( structure characterization ) confirm the conformational changes of G-rich and C-rich DNA¡¦s on gold surface are indeed dependent of the presence of cations and protons.

In this thesis, we test some interactions involving surfaces processes at the nanometer scale. The experiments are conducted with a highly sensitive interferometric Atomic Force Microscope (AFM), achieving a resolution down to E-28m2/Hz for the measurement of deflection. Combined with original thermal noise analysis, this tool allows quantitative characterization of the mechanical response of micrometer and nanometer sized systems, such as microcantilevers or carbon nanotubes, on a large frequency range.The first part of my work deals with the viscoelasticity of the coating of AFM cantilevers. Evidenced by a 1/f thermal noise at low frequency, this phenomenon is present when a cantilever is coated with a metallic layer (gold, aluminium, platinium, etc...). Using the fluctuation dissipation theorem and Kramers Kronig relations, we extract the frequency dependance of this viscoelastic damping on a wide range of frequency (1Hz to 20kHz). We find a generic power law dependence in frequency for this dissipation process, with a small negative coefficient that depends on materials. The amplitude of this phenomenon is shown to be linear in the coating thickness, demonstrating that the damping mechanism takes its roots in the bulk of the metallic layer.The second part of my work tackles new experiments on the interaction of carbon nanotubes with flat surfaces. Using our AFM, we perform a true mechanical response measurement of the rigidity and dissipation of the contact between the nanotube and the surface, in a peeling configuration (the nanotube is partially absorbed to the substrate). The results of this protocol are in line with the dynamic stiffness deduced from the thermal noise analysis, showing an unexpected power law dependence in frequency for the contact stiffness. We suggest some possible physical origins to explain this behavior, such as an amorphous carbon layer around the nanotube.

The main objective of nanotechnology is to build self-powered nanosystems that are ultrasmall in size, exhibit super sensitivity, extraordinary multi functionality, and extremely low power consumption. As we all know that 21st century has brought two most important challenges for us. One is energy shortage and the other is global warming. Now to overcome these challenges, it is highly desirable to develop nanotechnology that harvests energy from the environment to fabricate self-power and low-carbon nanodevices. Therefore a self-power nanosystem that harvests its operating energy from the environment is an attractive proposition. This is also feasible for nanodevices owing to their extremely low power consumption. One advantageous approach towards harvesting energy from the environment is the utilization of semiconducting piezoelectric materials, which facilitate the conversion of mechanical energy into electrical energy. Among many piezoelectric materials ZnO has the rare attribute of possessing both piezoelectric and semiconducting properties. But most applications of ZnO utilize either the semiconducting or piezoelectric property, and now it’s time to fully employ the coupled semiconducting-piezoelectric properties to form  the basis for electromechanically coupled nanodevices. Since wurtzite zinc oxide (ZnO) is structurally noncentral symmetric and has the highest piezoelectric tensor among tetrahedrally bonded semiconductors, therefore it becomes a promising candidate for energy harvesting applications. ZnO is relatively biosafe and biocompatible as well, so it can be used at large scale without any harm to the living environment. The synthesis of another transition metal oxide known as Co3O4 is also important due to its potential usage in the material science, physics and chemistry fields. Co3O4 has been studied extensively due to low cost, low toxicity, the most naturally abundant, high surface area, good redox, easily tunable surface and structural properties. These significant properties enable Co3O4 fruitful for developing variety of nanodevices. Co3O4 nanostructures have been focused considerably in the past decade due to their high electro-chemical performance, which is essential for developing highly sensitive sensor devices. I started my work with the synthesis of ZnO nanostructures with a focus to improve the amount of harvested energy by utilizing oxygen plasma treatment. Then I grow ZnO nanorods on different flexible substrates, in order to observe the effect of substrate on the amount of harvested energy. After that I worked on understanding the mechanism and causes of variation in the resulting output potential generated from ZnO nanorods. My next target belongs to an innovative approach in which AFM tip decorated with ZnO nanorods was utilized to improve the output energy. Then I investigated Co3O4 nanostructures though the effect of anions and utilized one of the nanostructure to develop a fast and reliable pH sensor. Finally to take the advantage of higher degree of redox chemistry of NiCo0O4 compared to the single phase of nickel oxide and cobalt oxide, a sensitive glucose sensor is developed by immobilizing glucose oxidase. However, there were problems with the mechanical robustness, lifetime, output stability and environmental adaptability of such devices, therefore more work is going on to find out new ways and means in order to improve the performance of fabricated nanogenerators and sensors.

Les métastases sont responsables de 90 % des décès causés par le cancer. Les métastases sont des foyers cancéreux secondaires qui se forment à distance de la tumeur d’origine. Des cellules cancéreuses quittent la tumeur primaire, rejoignent la circulation sanguine puis colonisent des organes voisins par migration à travers l’endothélium vasculaire. Ce phénomène d’adhésion à l’endothélium et de migration à travers l’endothélium appelé l’extravasation est une étape clé du processus métastatique. L’identification des molécules impliquées constitue une priorité dans le but d’élaborer de nouvelles drogues anticancéreuses. Nous avons précédemment montré que la molécule d’adhésion cellulaire InterCellular Adhesion Molecule-1 (ICAM-1) exprimée par les cellules endothéliales, est impliquée dans l’interaction des cellules de cancer de la vessie (BCs) avec l’endothélium. Cependant les ligands d’ICAM-1 n’ont pas été étudiés. Dans cette étude, nous utilisons des tests d'adhésion cellulaire et la microscopie à force atomique (AFM) afin d’identifier les ligands d’ICAM-1 et de mesurer les forces impliquées dans l’interaction ligand-ICAM-1. Nous avons identifié que les protéines MUC1 et CD43 exprimées par les BCs les plus invasives se lient à ICAM-1 en développant des forces d’intensité différente selon le couple considéré. Une analyse détaillée des événements de rupture suggère que CD43 est fortement lié au cytosquelette et que son interaction avec ICAM-1 correspond principalement à des sauts brusques. Au contraire, MUC1 semble être lié faiblement au cytosquelette et ses interactions avec ICAM-1 sont principalement associées à la formation de filaments membranaires ou « tethers ». Les forces mises en jeu lors de la migration des cellules cancéreuses à travers l'endothélium ont été étudiées par microscopie de forces de traction (TFM). Les résultats préliminaires montrent que les tractions exercées par les cellules cancéreuses lors de l’extravasation sont mesurables par TFM. / Cancer metastasis is associated with 90% cancer-associated deaths, when cancer cells escape from the primary tumor and form metastatic colonies in secondary sites. Extravasation is an important step in cancer metastasis, where cancer cells carried in blood, adhere and transmigrate through the endothelium. Therefore identifying the key molecules involved during the adhesion process could enable to develop new anticancer cancer drugs able to inhibit the adhesion of cancer cells to the endothelium. We have previously shown that InterCellular Adhesion Molecule-1 (ICAM-1) expressed by endothelial cells is involved in the interactions of bladder cancer cells (BCs) with the endothelium. However the ICAM-1 ligands have never been investigated. In this study, we combined adhesion assays and Atomic Force Microscopy (AFM) to identify the ligands involved and to quantify the forces relevant in such interactions. We report the expression of MUC1 and CD43 on BCs and demonstrate that these ligands interact with ICAM-1 to mediate cancer cell-endothelial cell adhesion in the case of the more invasive BCs. AFM experiments were performed to quantify the force ranges involved by MUC1 and CD43 during their interaction with ICAM-1. AFM measurements combined with a Gaussian Mixture Model showed distinct force ranges for the interaction of ICAM-1 with MUC1 and ICAM-1 with CD43. Furthermore, a detailed analysis of the rupture events suggests that CD43 is strongly connected to the cytoskeleton and that its interaction with ICAM-1 mainly corresponds to force ramps followed by sudden jumps. On the contrary, MUC1 seems to be weakly connected to the cytoskeleton as its interactions with ICAM-1 are mainly associated with the formation of tethers. The forces involved during the transmigration of cancer cells through the endothelium was investigated using Traction Force Microscopy (TFM). Preliminary results showed that tractions exerted by cancer cells during transmigration can be studied and quantified using TFM.

Resumo: O sistema de microscopia de força atômica se tornou um instrumento popular e útil para medir as forças intermoleculares com resolução atômica que pode ser aplicado em eletrônica, análises biológicas, engenharia de materiais, semicondutores, etc. Este trabalho estuda o comportamento da dinâmica não-linear da ponta da sonda causada pelo tipo da amostra e os modos de funcionamento de um microscópio de força atômica. Utilizando-se de simulações numéricas, busca-se uma solução aproximada, através do método de perturbação de múltiplas escalas e teoria de controle linear ótimo consegue-se um bom entendimento do trabalho feito e explicado a seguir. Este trabalho está dividido em três partes, na primeira apresentou-se o problema, mostrando a necessidade de se controlar o comportamento caótico no sistema a ser estudado. Mostrou-se o funcionamento do microscópio atômico com todas suas variáveis de funcionamento. Foram geradas as equações de movimento e os resultados são obtidos através de integrações numéricas das equações de movimento, obteve-se oscilações regulares e irregulares (caóticos), os quais dependem da escolha dos parâmetros do sistema. Na segunda parte do trabalho, utilizou-se o método das múltiplas escalas, efetuou-se a busca de uma solução analítica aproximada para o movimento estacionário do sistema, que foi obtida através de técnicas de perturbações. Este método foi desenvolvido foi desenvolvido por [10] para controlar estes sistemas / Abstract: The atomic force microscope system has become a popular and useful instrument to measure the intermolecular forces with atomic-resolution that can be applied in electronics, biological analysis, materials, semiconductors etc. This work studies the complex nonlinear dynamic behavior of the probe tip between the sample and cantilever of an atomic force microscope using numeral simulations, method of multiple scales, and optimal linear control. This work concerns of three parts, in the first we will make the presentation of the AFM, showing various models of AFM. In second part, regular and irregular (chaotic) behaviors depend of the physical parameters and can be observed when a numerical integration is performed. When the dynamic system of the AFM becomes a chaotic oscillator a computational and analytical study of the nonlinear dynamic behavior of the AFM oscillator is proposed and it is obtained by perturbations method. The third part is dedicated to the application and performance of the linear feedback control for the suppressing of the chaotic motion of a non ideal system, theses systems are numerically studied. We use the method developed by [10] to control both the non-ideal system. This method seeks to find an optimal linear feedback control where they find - if conditions for the application of linear control in non-linear, ensuring the stability of the problem / Orientador: José Manoel Balthazar / Coorientador: Bento Rodrigues de Pontes / Banca: Átila Madureira Bueno / Banca: Angelo Marcelo Tusset / Mestre

Ce travail porte sur l'étude du comportement rhéologique de fluide en milieu confiné. Pour cela le levier d'un microscope à force atomique (AFM) est utilisé pour sonder les propriétés rhéologiques d'un fluide confiné entre deux surfaces : la surface d'une sphère collée à l'extrémité du levier et une surface plane sur lequel le fluide est déposé. Le dispositif expérimental est constitué du système de mesure d'un AFM et d'un piézoélectrique permettant d'approcher ou d'éloigner de la sphère la surface plane. Un modèle analytique permet d'extraire les propriétés rhéologiques du fluide confiné à partir de la déflexion du levier induite par le pincement du fluide. Cette méthode a été validée pour les fluides newtoniens. Par contre pour les fluides non-newtoniens comme par exemple la solution de polyacrylami de nous avons trouvé que la viscosité dépend de la distance D et que le cisaillement n'est pas le seul paramètre pertinent pour interpréter les propriétés rhéologiques. / This thesis focuses on the study of the rheological behavior of confined fluids. For this purpose, the microcantilever of an atomic force microscope (AFM) is used to probe the rheological properties of a fluid confined between two surfaces, the surface of a sphere glued to the free-end of the AFM microcantilever and a flat solid surface on which the fluid is deposited. The set-up consists of an AFM, an electrical system for the deflection measurement and a piezoelectric device to move the solid surface (approach, oscillation, etc.). An analytical model allows to determine the rheological properties of the confined fluid from the measurement of the microcantilever deflection due to the hydrodynamic force exerted by the fluid on the sphere.This method has been validated for Newtonian fluids. For non-Newtonian fluids, such as polyacrylamide solution, we found that the viscosity depends on the distance D between the sphere and the plane surface and the shear rate is not the only relevant parameter for interpreting the rheological properties.

O estudo das não linearidades das séries temporais da microviga de um microscópio de força atômica tem sido essencial para o desenvolvimento e aperfeiçoamento deste equipamento de ampliação de imagens. Não linearidades podem aparecer com frequência nos experimentos, afetando significativamente a resposta prevista de forma que estas instabilidades se concretizam em imagens ruins. Esta tese apresenta resultados obtidos através de uma abordagem experimental e teórica. Buscou-se aperfeiçoar modelos clássicos de osciladores do microscópio de força atômica melhorando seu comportamento caótico através da observação dos resultados dos experimentos. A identificação de sistemas é feita pelo método de espaço de estados. Outra abordagem de séries temporais obtidas através de um microscópio de força atômica torna possível a reconstrução de espaço de estados, utilizando-se de técnicas como informação mútua, falsos vizinhos e defasagem de tempo. Analisa-se também o comportamento caótico das séries temporais usando o teste 0-1 e escala indexada em quatro experimentos que resultam em um mapa que relaciona a altura que a microviga vibra com o coeficiente do teste 0-1 e com a escala indexada. / The study of time series nonlinearities of the cantilever\'s atomic force microscope has been essential to the development and improvement of this image magnification equipment. Nonlinearities may appear frequently in the experiments, significantly affecting expected response in a way that these instabilities generate bad images. This thesis presents results obtained through an experimental and theoretical approach accordingly. We attempted to improve the classical models of oscillators atomic force microscope improving its chaotic behavior by observing the results of the experiments. The system identification is made by method space state. Another approach to time series obtained through an atomic force microscope makes it possible to reconstruct space phase, using techniques such as mutual information and false neighbors delay. It is analyzed chaotic behavior time series by using the 0-1 test and scale index in four experiments resulting in a map that relates the height of cantilever deflections with the 0-1 test coefficient and the indexed scale.