This thesis deals with systematic revision, evolutionary trends, palaeoecology and migration patterns of crustaceans (Cirripedia and Decapoda) from the Upper Cretaceous of the Bohemian Cretaceous Basin. Thesis is presented as a compilation of 9 papers that were published in scientific peer-reviewed journals and includes not only old museum material, but also numerous crustacean specimens which have been recovered in the last decade. Besides, short remarks on fossil crustaceans currently under study or in the process of being published (Paraclythia, Oncopareia, Acrothoracica) are also included in this thesis. In view of the fact that the fossil crustaceans from the BCB were most recently recorded in the turn of the 19th and the 20th centuries (and partially revised in the first half of the 20th century) and since the systematics and taxonomy have changed significantly, all papers presented here focus primarily on systematic revision and modern description. The essential part of the thesis thus deals with taphonomy and its bearing on the identification of fossil material. Thanks to a modern description, new species of Ctenocheles fritschi (axiidean shrimp), Archaeochionelasmus nekvasilovae (acorn barnacle), Myolepas reussi and Capitulum sklenari (pedunculate barnacles) were erected. C. fritschi is...

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Submitted by Caroline Falcao (caroline.rfalcao@ufpe.br) on 2017-05-22T17:45:56Z No. of bitstreams: 2 license_rdf: 1232 bytes, checksum: 66e71c371cc565284e70f40736c94386 (MD5) TESE FINAL Carlos Geraldo-PPGO.pdf: 10438439 bytes, checksum: 846645d0ef9edecba48513889f2c3692 (MD5) / Made available in DSpace on 2017-05-22T17:45:56Z (GMT). No. of bitstreams: 2 license_rdf: 1232 bytes, checksum: 66e71c371cc565284e70f40736c94386 (MD5) TESE FINAL Carlos Geraldo-PPGO.pdf: 10438439 bytes, checksum: 846645d0ef9edecba48513889f2c3692 (MD5) Previous issue date: 2014-09-29 / O campo magnético é uma fonte acessível de informação direcional passível de ser utilizada pelos seres vivos para orientação e navegação. Animais como mamíferos, aves, peixes, répteis marinhos, anfíbios, moluscos, insetos e crustáceos são sensíveis ao campo geomagnético. O presente estudo enfocou uma avaliação do efeito do campo magnético sobre peixes e crustáceos marinhos em condições naturais (área costeira) e sobre camarões Litopennaeus vannamei em condições controladas (laboratório). Os experimentos com peixes e crustáceos em condições naturais consistiram de sete a oito pescarias independentes, empregando-se armadilhas tipo covo distribuídos em cinco grupos de três a quatro unidades. Magnetos permanentes de 2000 Gauss em um raio de 2m foram fixados próximos à abertura de seis dos dezesete covos empregados. Ao final de cada pescaria os peixes e crustáceos capturados em cada covo foram identificados e contabilizados. Os níveis de capturas de peixes e crustáceos foram significativamente mais elevados nos covos com magneto. Dezessete espécies de crustáceos estiveram presentes nas capturas com os covos, dentre as quais as duas espécies mais frequentes foram Coryrhynchus riisei e Stenorhynchus seticornis. Trinta e duas espécies de peixes ocorreram nas capturas com os covos, com a espécie Haemulon aurolineatum (Xira branca) apresentando uma frequência de ocorrência uma a duas ordens de magnitude superior as demais espécies capturadas, principalmente nos covos com magneto. Ante este resultado, otólitos e tecidos da linha lateral, mancha ocelar, narina e área abdominal (controle) foram extraídos de cinco indivíduos jovens e de cinco indivíduos adultos de H. aurolineatum para investigar a presença de material magnético nessas estruturas. As amostras foram coletadas de indivíduos recém-capturados, secas em estufa e submetidas a medidas de ressonância ferromagnética (RFM) com uso de um espectrômetro Bruker ESP300E. Os espectros obtidos indicaram presença de material magnético nos otólitos, narinas e mancha ocelar e ausência de material magnético nos tecidos da área abdominal de todos os espécimes analisados. Nas amostras da linha lateral, a presença de material magnético pareceu estar relacionada ao desenvolvimento ontogenético, tendo sido detectado principalmente em espécimes adultos. Os experimentos em condições controladas foram realizados com camarões Litopenaeus vannamei considerando-se sexos e fases do seu ciclo ontogenético (machos e fêmeas adultos; machos e fêmeas juvenis e pós-larvas). Um par de bobinas circulares na configuração de Helmholtz, conectada a uma fonte regulável, foi empregado para a geração de diferentes intensidades (0, 25, 30, 35 e 40 μT) de campo magnético artificial uniforme. Os testes foram realizados de forma acumulativa e não acumulativa. No primeiro caso, um mesmo grupo de 15 camarões foi sequencialmente submetido aos cinco níveis de intensidade de campo magnético, com um intervalo de 24h entre exposições. No segundo caso, empregando- se novos grupos de 15 camarões para cada nível de exposição. Todos os testes foram realizados em triplicata. Os resultados evidenciaram a redução da atividade do L. vannamei quando expostos a campos de 35μT e 40 μT e sua paralisia total a campo de 40μT, assim como a preferência na ocupação do polo sul por fêmeas e machos adultos e juvenis e do polo norte por pós-larvas. / The magnetic field is a handy source of directional information that can be used by living things for orientation and navigation. Animals such as mammals, birds, fishes, marine reptiles, amphibians, molluscs, insects and crustaceans are sensitive to the geomagnetic field. The present study focused on an evaluation of the response of marine fishes and shellfishes subjected to an artificial magnetic field under natural conditions (coastal area) and under controlled conditions (laboratory). The experiments with fishes and crustaceans in natural conditions consisted of seven to eight independent fisheries employing creels traps distributed into five groups of three to four units. Permanent magnets of 2000 Gauss in a 2m radius were tied next to the opening of six of the seventeen creels employees. At the end of each fishery, fish and crustaceans caught in each trap were identified and accounted for. The levels of catches of fish and crustaceans were significantly higher in creels with magnet. Seventeen species of crustaceans were present in the catches with the creels, among which the two species most frequently were Coryrhynchus riisei and Stenorhynchus seticorni. Thirty-two species of fish were present in the catchs with the creels. The frequence of occurrence of the speciie Haemulon aurolineatum (Tomtate grunt) was one to two orders of magnitude higher than the other species caught, mainly in creels with magneto. Given this results, Otoliths and tissues of the lateral line, ocelar spot, nostril and abdomen (control) were extracted from five young individuals and five adult individuals of H. aurolineatum to investigate the presence of magnetic material in these structures. The samples were collected from newly captured individuals, oven-dried and subjected to measures of ferromagnetic resonance (RFM) using a Bruker ESP300E spectrometer. The spectra obtained indicated presence of magnetic material in otoliths, nostrils and ocelar spot and absence of magnetic material in the tissues of the abdominal area of all specimens examined. In the samples of the lateral line, the presence of magnetic material seems to be related to the ontogenetic development, having been detected mainly among adult specimens. The experiments under controlled conditions were performed with the shrimp Litopenaeus vannamei considering different sexes and stages of their ontogenetic cycle (adult males and females; juvenils males and females and post-larvae). A pair of circular coils in Helmholtz configuration, connected to an adjustable power source was used to generate different intensities (0, 25, 30, 35 and 40 μT) of uniform artificial magnetic field. The tests were carried out in accumulative and non accumulative manners. In the first case, a group of 15 shrimps was sequentially exposed to the five levels of magnetic field intensity, with a 24 hours interval between exposures. In the second case, using new groups of 15 shrimps for each level of exposure. All tests were performed in triplicate. The results showed a reduction in activity of L. vannamei when exposed to fields of 35 μT and higher and their total paralysis to levels of 40 μT, as well as the preference in the occupation of the South Pole by females and males juvenils and adults and of the North Pole by post-lavae.

Les Wolbachia sont des alpha-proteobactéries présentes chez de nombreux arthropodes et nématodes filaires. Ces bactéries héritées maternellement induisent chez leurs hôtes des phénotypes allant du parasitisme au mutualisme, avec le long de ce continuum des phénotypes tels que la féminisation (F), l'incompatibilité cytoplasmique (IC) ou la mort des mâles. Wolbachia est ainsi un modèle particulièrement intéressant pour étudier les différents types de relations symbiotiques.Chez Brugia malayi, comme pour les autres nématodes filaires, Wolbachia vit en symbiose obligatoire avec son hôte. L'élimination de la bactérie par des traitements antibiotiques entraîne une perte de fertilité voire la mort du nématode. Chez l'isopode terrestre Armadillidium vulgare, Wolbachia induit la féminisation des mâles génétiques en femelles fonctionnelles entraînant des biais de sex-ratio vers les femelles dans la descendance.Pour comprendre les mécanismes impliqués dans ces deux symbioses, nous avons mis au point une nouvelle méthode de capture pour isoler l'ADN de Wolbachia et séquencer 8 souches de Wolbachia d'isopodes (F et IC). Une étude de génomique comparative a permis d'établir un premier pan-génome des bactéries du genre Wolbachia et d'identifier 2, 5 et 3 gènes présents seulement chez les souches mutualistes, féminisantes ou induisant la mort des mâles. L'expression des gènes potentiellement impliqués dans la féminisation ou le mutualisme a été étudiée au cours du développement de l'hôte. L'étude de l'interactome protéique bactérie-hôte a ensuite été initiée en utilisant comme appât des protéines bactériennes à domaines eucaryotes en vue d'identifier les cibles de Wolbachia chez l'hôte. / Bacteria of the genus Wolbachia are gram-negative alpha-proteobacteria present in many arthropods and filarial nematodes. These obligate intracellular bacteria are maternally inherited and induce a large number of phenotypes across the symbiosis continuum from mutualism to parasitism, including feminization (F), cytoplasmic incompatibility (CI) or male killing. Studying Wolbachia symbioses is therefore of particular interest in the investigation of symbiotic relationships.In Brugia malayi and other filarial nematodes, they are obligate leading to a loss of worm fertility, and eventual death upon their depletion with antibiotic. In arthropods, they rather are parasitic. In the isopod crustacean Armadillidium vulgare they cause feminization when present: genetic males develop as functional female leading to female biased sex-ratio progenies.In order to understand the molecular mechanisms of these two symbioses, we set up a new capture procedure to catch Wolbachia DNA and performed whole-genome sequencing on 8 Wolbachia strains, symbionts of isopods (F & CI). Comparative genomics led to the establishment of the Wolbachia pan-genome as well as the identification of phenotype related gene patterns. We identified 2, 5 and 3 genes that are only found in mutualist, feminizing and male killing strains, respectively. Expression of genes potentially involved in feminization and mutualism were also analyzed throughout host post-embryonic development. Host-symbiont interactome approach was then initiated by protein-protein interaction studies using bacterial proteins with eukaryote like motifs as bait in order to identify Wolbachia host targets involved in symbiosis.