Regrowth in the lesioned central nervous system is impeded by inhibitory molecules including myelin-associated inhibitors (MAIs) and chondroitin sulfate proteoglycans (CSPGs). Inhibitory molecules engage neuronal cell surface receptors and activate the small GTPase RhoA in injured neurons to mediate neurite outgrowth inhibition through targeted modifications to the cytoskeleton. Inhibition of RhoA with the ribosyltransferase C3 attenuates neurite outgrowth inhibition in vitro and in vivo but the ubiquitous expression and multifunctionality of RhoA may limit the specificity of therapeutic RhoA antagonists. The hypothesis of the thesis is that molecules that functionally interact with RhoA to mediate myelin-dependent inhibition may represent more specific targets for therapeutic intervention. We have explored the contribution of two RhoA interacting proteins to the neurite outgrowth inhibitory effects of MAIs. In Chapter 2 we describe the contribution of the rho effector, Rho kinase (ROCK) to MAI responses in neurons. In Chapter 3 we identify the cytosolic phosphoprotein CRMP4b (Collapsin Response Mediator Protein 4b) as a novel RhoA binding partner that mediates neuronal responses to CNS inhibitors. By structure function analysis we have developed a molecular antagonist of CRMP4b-RhoA binding that promotes neurite outgrowth on inhibitory substrates in vitro and has the potential to be a potent and specific molecular therapeutic for spinal cord injury. In Chapter 4 we identify glycogen sythase kinase 3b (GSK3b) as an important kinase in the MAI pathway that regulates protein interactions with RhoA. This thesis provides insights into the signal transduction machinery that is engaged in response to CNS inhibitors and suggests several novel therapeutic targets to promote axon regeneration following CNS injury.

Anion exchanger 1 (AE1) is a 95 kDa glycoprotein that facilitates Cl-/HCO3- exchange across the erythrocyte plasma membrane. Seven conserved tryptophan (Trp) residues are in the AE1 membrane domain; at the membrane interface (Trp648, Trp662, and Trp723), in transmembrane segment (TM) 4 (Trp492 and Trp496), and in hydrophilic loops (Trp831, and Trp848). All 7 Trp residues were individually mutated into alanine (Ala) and phenylalanine (Phe) and transiently expressed in human embryonic kidney (HEK)-293 cells. The 7 Trp residues could be grouped into three classes according to the impact of the mutations on the functional expression of AE1: class 1, normal expression, class 2, expression decreased, and class 3, expression decreased by Ala substitution. These results indicate that Trp residues play differential roles in AE1 expression depending on their location in the protein and suggest that Trp mutants with a low expression are misfolded and retained in the ER.

Anion exchanger 1 (AE1) is a 95 kDa glycoprotein that facilitates Cl-/HCO3- exchange across the erythrocyte plasma membrane. Seven conserved tryptophan (Trp) residues are in the AE1 membrane domain; at the membrane interface (Trp648, Trp662, and Trp723), in transmembrane segment (TM) 4 (Trp492 and Trp496), and in hydrophilic loops (Trp831, and Trp848). All 7 Trp residues were individually mutated into alanine (Ala) and phenylalanine (Phe) and transiently expressed in human embryonic kidney (HEK)-293 cells. The 7 Trp residues could be grouped into three classes according to the impact of the mutations on the functional expression of AE1: class 1, normal expression, class 2, expression decreased, and class 3, expression decreased by Ala substitution. These results indicate that Trp residues play differential roles in AE1 expression depending on their location in the protein and suggest that Trp mutants with a low expression are misfolded and retained in the ER.

This dissertation aims to further the understanding of the complex communication that occurs as cells interact with topographical and chemical patterns on a biomaterial interface. The research accomplishes this through two aims fabricating cell substrate surface topography and chemical patterns independently using non-cleanroom approaches, and analyzing higher order cellular response to surface features. The work will impact biomaterial surface modification and fabrication which will apply to biomedical implanted devices, tissue engineering scaffolds, and biological analysis devices. The first aim seeks to apply non-traditional topographical and chemical patterning methods in order to create independent topographical and chemical patterns on cell culture substrates. Experiments use the resulting patterned substrates to quantify cellular alignment to surface topography and compare the relative influence of topographical and chemical patterns on cellular response. The combined patterning methods of imprint lithography and micro-contact printing result in a high-throughput technique applicable to a variety of materials and a range of feature sizes from nanoscale through microscale, thereby enabling future analysis of cell response to surface features. The second aim evaluates the impact of topographical and chemical features on cellular differentiation. Experiments use patterned topography overlaid with a characterized chemical model layer to evaluate the effects of topography on myoblast differentiation and alignment. Chemical patterns that independently control available cell spreading area and modulate cell-cell contact are used to investigate the impact of cell-cell contact on differentiation.

Thesis (Ph.D. in Human Medical Genetics) -- University of Colorado Denver, 2007. / Typescript. Includes bibliographical references (leaves 117-126). Free to UCD affiliates. Online version available via ProQuest Digital Dissertations;

Thesis (Ph. D.)--Medical College of Ohio, 2004. / "In partial fulfillment of the requirements for the degree of Doctor of Philosophy in Medical Sciences." Major advisor: Manohar Ratnam. Includes abstract. Document formatted into pages: iii, 293 p. Title from title page of PDF document. Includes bibliographical references (p. 175-281).

Thesis (Ph.D. in Immunology) -- University of Colorado Denver, 2008. / Typescript. Includes bibliographical references (leaves 174-182). Free to UCD Anschutz Medical Campus. Online version available via ProQuest Digital Dissertations;

Enteropathogenic Escherichia coli (EPEC) and enterohemorrhagic E. coli O157:H7 (EHEC) form characteristic lesions on infected mammalian cells called actin pedestals. Each of these two pathogens injects its own translocated intimin receptor (Tir) molecule into the plasma membranes of host cells. Interaction of translocated Tir with the bacterial outer membrane protein intimin is required to trigger the assembly of actin into focused pedestals beneath bound bacteria. Despite similarities between the Tir molecules and the host components that associate with pedestals, recent work indicates that EPEC and EHEC Tir are not functionally interchangeable. For EPEC, Tir-mediated binding of Nck, a host adaptor protein implicated in actin signaling, is both necessary and sufficient to initiate actin assembly. In contrast, for EHEC, pedestals are formed independently of Nck, and require translocation of bacterial factors in addition to Tir to trigger actin signaling.

Conselho Nacional de Desenvolvimento CientÃfico e TecnolÃgico / Lectinas sÃo proteÃnas que apresentam afinidade por carboidratos especÃficos. E-xiste um considerÃvel interesse pelos carboidratos de superfÃcie celular posto que estÃo relacionados com fenÃmenos de diferenciaÃÃo e maturaÃÃo. Durante a transformaÃÃo neoplÃsica ocorrem alteraÃÃes da membrana celular, principalmente na composiÃÃo de carboidratos, que determinam caracterÃsticas especiais Ãs cÃlulas. Lectinas tÃm sido utili-zadas como ferramentas em muitas Ãreas de investigaÃÃo diagnÃstica, especialmente no estudo dos glicoconjugados celulares. No presente estudo investigou-se a expressÃo de glicoconjugados especÃficos para Artocarpus incisa (frutalina) em vÃrios estÃgios histolÃ-gicos de progressÃo tumoral na mama. Foram incluÃdas amostras de epitÃlio normal, metaplasia apÃcrina, hipreplasia ductal tÃpica e atÃpica, carcinoma ductal in situ, carci-noma ductal invasivo e metÃstase ganglionar. As amostras foram marcadas utilizando o mÃtodo da EstreptoâAvidinaâBiotinaâPeroxidase com duas tÃcnicas diferentes: a frutali-na, como sonda primÃria e o anticorpo anti-frutalina como ponte (TÃcnica I); anticorpo anti-frutalina como sonda primÃria (TÃcnica II). Em ambas as tÃcnicas ocorreu coloraÃÃo mais forte no epitÃlio alterado do que no normal, sendo o predomÃnio da coloraÃÃo membranar. Muitos dos carcinomas ductais in situ tambÃm coraram tanto a membrana quanto a citoplasma, pela TÃcnica I; com a tÃcnica II, o predomÃnio foi de citoplasma. Todos os carcinomas ductais invasivos coraram fortemente, com ligeira predominÃncia do citoplasma, quando foi utilizada a TÃcnica I. Um nÃmero menor de casos corou com a TÃcnica II. Com esta tÃcnica nenhuma das hiperplasias atÃpicas corou a membrana, aliÃs, a partir das hiperplasias atÃpicas houve um decrÃscimo na marcaÃÃo das membranas e um ganho na marcaÃÃo do citoplasma. Este trabalho mostrou que a frutalina à um mar-cador de cÃlulas epiteliais. Revela que durante a progressÃo tumoral houve modificaÃÃo de glicoconjugados da superfÃcie celular expondo resÃduos de galactose. O anticorpo anti-frutalina marcou cÃlulas epiteliais, aparentemente de forma especÃfica, porÃm sem-pre em menor nÃmero de casos. / Lectins are proteins which bind specifically to carbohydrates. Recently consider-able interest has been devoted to cell surface carbohydrates, since they are related to differentiation and maturation phenomena. Neoplastic transformation in cells is associ-ated to altered cell surface membranes, particularly with an abnormal composition. This may determine of neoplastics cell characteristics. Lectins have been used as tools in many areas of diagnostic investigation especially related to changes in the expressions of membrane and cytoplasmatic carbohydrates. In this study it has been examined the ex-pression of glycoconjugates especific to Artocarpus incisa lectin (frutalina) in various his-tological stages of tumor progression in the breast tissues. These included normal epithe-lium, apocrine metaplasia, ductal hyperplasia, without and with atypia, ductal carcino-ma in situ, invasive ductal carcinoma and nodal metastasis. This tissue was stained to bind to the lectin using two different histochemical techniques: frutalina reacting direct-ly (Technique I) and antibody anti-frulalina as a bridge; antibody anti-frutalina reacting directly (Technique II). In both techniques the staining was more frequent in malignant than in benign breast epithelium. Most of the ductal carcinomas in situ stained the mem-brane as well as the citoplasm. All invasive ductal carcinomas were stained by frutalina. During the tumor progression there occurred modifications on the glycoconjugate cellu-lar surfaces showing galactose residues. The most interesting aspect of this study was that the antibody anti-frutalina did not stained any of the cases of atypical hyperplasia.

Submitted by Luciana Ferreira (lucgeral@gmail.com) on 2016-04-20T12:49:28Z No. of bitstreams: 2 Dissertação - Alex Jesus de Carvalho - 2014.pdf: 1685689 bytes, checksum: 5b4f38809e4a3fe6252bba20b25d949b (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) / Approved for entry into archive by Luciana Ferreira (lucgeral@gmail.com) on 2016-04-20T12:58:32Z (GMT) No. of bitstreams: 2 Dissertação - Alex Jesus de Carvalho - 2014.pdf: 1685689 bytes, checksum: 5b4f38809e4a3fe6252bba20b25d949b (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) / Made available in DSpace on 2016-04-20T12:58:33Z (GMT). No. of bitstreams: 2 Dissertação - Alex Jesus de Carvalho - 2014.pdf: 1685689 bytes, checksum: 5b4f38809e4a3fe6252bba20b25d949b (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) Previous issue date: 2014-06-09 / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPES / The Gram-positive bacterium Staphylococcus saprophyticus, one of the coagulasenegative staphylococci, is the second most common causative agent of urinary tract infection, affecting mainly sexually active women. Staphylococcus saprophyticus can cause acute diseases as pyelonephritis, sepsis, nephrolithiasis, endocarditis, urethritis, epididymitis and prostatitis. This work aims to identify Staphylococcus saprophyticus surface proteins by using a proteolytic shaving approach, a methodology that was established to identify surface-exposed protein domains by tripsinization of intact cells. The peptides obtained were treated by trypsin, reduced, alkylated and identified by nano-chromatography using a nanoACQUITY UPLCTM system (Waters) coupled to a SYNAPT Q-TOF mass spectrometer (Waters). The homology analysis was performed using the software ProteinLynx 2.3 (Waters). Through the shaving, it was possible to identify 219 proteins, many of them, described as virulence factors. Of total, 01 is cell wall protein, 09 are extracelular proteins, 19 are membrane proteins and 190 are citoplasmatic proteins. Besides of the lysis process, the presence of cytoplasmic proteins on cell surface can be due to the activity of export pathways not yet identified and many of these proteins can be proteins with moonlighting function, in other words, proteins that plays more of one function, it can, in this case, plays functions on S. saprophyticus cell surface related to bacterial virulence. The main proteins with moonlighting function include metabolic enzymes of the glycolytic pathway; enzymes of other metabolic pathways, such as, glyoxalate cycle; chaperones and proteins related with the proteic folding. The prediction of cellular localization was performed through LocateP database. The results of this research help to elucidate the strategies and machineries used by proteins during the adhesion, infection and proliferation, leading us to understand the interaction between the pathogenic bacteria S. saprophyticus and the human host. The knowledge about the proteins present on the cell surface is of extreme importance, because many of these proteins represent targets to new drugs, therapeutic antibodies or vaccines, since the pathogen cell surface is the first to contact with the host cells during the infection process. / A bactéria Gram-positiva Staphylococcus saprophyticus, uma das bactérias estafilococos coagulase negativa, é o segundo agente mais comum causador de infecções do trato urinário, afetando principalmente mulheres sexualmente ativas. S. saprophyticus pode causar doenças agudas como pielonefrite, sepse, nefrolitíase, endocardite, uretrite, epididimite e prostatite. Este trabalho teve como objetivo identificar proteínas de superfície de S. saprophyticus pela abordagem de shaving proteolítico, uma metodologia que foi estabelecida para identificar proteínas que possuem domínios proteicos na superfície celular utilizando a tripsinização de células intactas. Posteriormente, os peptídeos obtidos foram tripsinizados, reduzidos, alquilados e identificados através de nano-cromatografia utilizando um sistema nanoACQUITY UPLCTM (Waters) acoplado a um espectrômetro de massas SYNAPT Q-TOF (Waters). Com isso foi possível identificar 219 proteínas, muitas delas descritas como fatores de virulência. Do total, 01 proteína é de parede celular, 09 extracelulares, 19 de membrana e 190 citoplasmáticas. Além do processo de lise, a presença de proteínas citoplasmáticas na superfície celular pode ser devida à atividade de vias de exportação ainda não identificadas e muitas dessas proteínas podem ser proteínas com função moonlighting, ou seja, proteínas que desempenham mais de uma função, podendo, neste caso, desempenhar funções na superfície de S. saprophyticus relacionadas à virulência bacteriana. As principais proteínas com função moonlighting incluem enzimas metabólicas da via glicolítica; enzimas de outras vias metabólicas, tais como, ciclo do glioxalato; chaperonas e proteínas relacionadas com o dobramento proteico. A predição de localização celular foi realizada com o banco de dados LocateP. Os resultados desta pesquisa contribuíram na elucidação das estratégias e maquinarias utilizadas pelas proteínas durante a adesão, infecção e proliferação, levando-nos a compreender a interação entre a bactéria patogênica S. saprophyticus e o hospedeiro humano. O conhecimento acerca das proteínas presentes na superfície celular é de extrema importância, visto que muitas dessas proteínas representam alvos para novas drogas, anticorpos terapêuticos ou vacinas, uma vez que a superfície celular do patógeno é a primeira a entrar em contato com as células do hospedeiro durante o processo de infecção.