Vascular risk factors inducing a state of chronic cerebral hypoperfusion and metabolic stress are thought to influence the onset and progression of Alzheimer’s disease (AD). To investigate the complex molecular changes underpinning cellular adaptation to metabolic stress, the first aim of this thesis was to define the proteomic response of the SH-SY5Y human neuroblastoma cell line after exposure to the metabolic challenge of oxygen glucose deprivation (OGD). 958 proteins across multiple subcellular compartments were detected and quantified by label-free liquid chromatography mass spectrometry (LC-MS). The levels of 130 proteins were significantly increased (P<0.01) after OGD and the levels of 63 proteins were significantly decreased (P<0.01) while expression of the majority of proteins (765) was not altered. Ingenuity Pathway Analysis identified novel protein-protein interactomes involved with mitochondrial energy production, protein folding, and protein degradation, indicative of coherent and integrated proteomic responses to the metabolic challenge. Approximately one third (61) of the differentially expressed proteins were associated with the endoplasmic reticulum and mitochondria. Electron microscopic analysis of these subcellular structures showed morphologic changes consistent with the identified proteomic alterations. Pertinent to AD research, amyloid binding alcohol dehydrogenase (ABAD) was found to be significantly increased in response to OGD. ABAD is emerging as a key player in mitochondrial dysfunction in AD, yet full understanding of the biochemical pathways in which this protein is involved remain elusive. Using immunoprecipitation coupled to LC-MS (IP-MS), the second aim of the thesis was to characterise the ABAD protein interactome in SH-SY5Y cells and its response to metabolic stress. 67 proteins were identified as potential ABAD interactors under control conditions, and 69 proteins were identified as potential ABAD interactors under OGD conditions. The Database for Annotation, Visualization and Integrated Discovery (DAVID) was used to determine the subcellular locations and biological functions of the ABAD interacting proteins in control and OGD conditions. DAVID identified the nuclei and mitochondria to contain the greatest number of changes in ABAD interacting proteins following OGD. “Glucose Metabolic Process” (GO:0006006) was the top functional cluster for ABAD interacting proteins in both control and OGD conditions. Independent immunoprecipitations, western blotting, immunohistochemistry and electron microscopy were used to validate specific protein interactions. OGD was found to initiate a novel interaction between ABAD and glucose-regulated protein 75 (GRP75), a finding confirmed in human AD tissue. GRP75 is a mitochondrial protein and marker of the mitochondrial associated membrane (MAM), a specialised region between the mitochondria and the ER. The MAM is known to be enriched with presenilin proteins, involved in the proteolytic cleavage of amyloid precursor protein (APP). These data were used to generate an “ABAD-GRP75-MAM hypothesis of mitochondrial dysfunction in AD”, which might provide a novel link between chronic metabolic stress, ABAD, mitochondrial dysfunction and the onset / progression of AD. The third aim of the thesis was to test this novel hypothesis. Western blotting revealed APP to be significantly decreased following OGD, concurrent with an increase in ABAD protein levels. Over-expression of ABAD protein in SH-SY5Y cells was used to test whether the increased levels of ABAD following OGD were the driving force behind APP down-regulation. ABAD over-expression in SH-SY5Y cells was found to have no detectable effect on APP. Conversely, electron microscopy revealed a dynamic response of the MAM to metabolic stress. This result, along with the interaction of ABAD with GRP75, and the enrichment of presenilins at the MAM, suggests that this specialised membrane region may have an important role to play in AD.

Brevetoxins are natural neurotoxins that are produced by “red tide” algae. In this study, brevetoxin-1 and brevetoxin-2 were incubated with rat liver hepatocytes and rat liver microsomes, respectively. After clean-up steps, samples were analyzed by liquid chromatography-electrospray mass spectrometry (LC-ES-MS). Two metabolites were found for brevetoxin-1: brevetoxin-1-M1 (MW 900 Da), formed by converting one double bond in the E or F ring into a diol; and brevetoxin-1-M2 (MW 884 Da), a hydrolysis product of brevetoxin-1 involving opening of the lactone ring. The incubation study of brevetoxin-2 found two metabolites. Brevetoxin-2-M1 (MW 912 Da) was elucidated by negative mode LC-MS/MS to be the hydrolysis product of brevetoxin-2. The second metabolite (brevetoxin-2-M2, MW 896 Da) was deduced to be brevetoxin-3. All brevetoxins have high affinities for sodium ions. Attempts to obtain informative product ions from the collision induced decomposition (CID) of [M + Na]+ brevetoxin precursor ions only resulted in uninformative sodium ion signals. In our nano-electrospray experiments, the addition of ammonium fluoride resulted in the formation of the ammonium adduct or protonated brevetoxin with a concomitant decrease of the sodium adduct peak. Product ion spectra of [M + NH4]+ and [M + H]+ were similar and provided useful structural information. The optimal values for ammonium fluoride concentration and the cone voltage were experimentally determined. In negative mode electrospray, without additives, deprotonated molecules of brevetoxins do not appear in high abundances, and thus are not well-suited for CID experiments. Several anions were tested for their abilities to form brevetoxin-anion adducts by mixing ammonium salts of these anions with brevetoxin-2 and brevetoxin-3. Under CID, [M + Cl]-, [M + Br]-, [M + OAc]-, [M + HCOO]-, [M + NO3]- adducts all produced only the respective anions in CID experiments, and thus, gave no structural information. In contrast, upon CID, both [M + F]- and [M + HCO3]- precursor adducts gave structurally-informative fragment peaks that exhibited similarities to those of [M - H]- ions; the detailed fragmentation mechanisms are discussed. In comparison, fluoride is a better choice to study brevetoxins in negative ES-MS by the anionic adduct approach.

For a long period of time, it has been common to use creosote for impregnation of railroad ties. Creosote consists of 85% polycyclic aromatic hydrocarbons (PAHs), of which some are carcinogenic and/or mutagenic. In 2016, a soil remediation process was commenced at an old impregnation facility in Sweden and both dermal, urine and blood samples were taken from soil remediation workers to investigate the occupational exposure. The objectives of this study were to develop a method for the extraction of polycyclic aromatic compounds (PACs), including PAHs, oxy-PAHs, alkylated PAHs and dibenzothiophenes and azaarenes from blood, and to quantify PAHs in the collected blood samples from the soil remediation workers. In the method development, two parameters were tested: centrifugation of samples before extraction and use of either basic or deactivated silica in the clean-up step of the blood extracts. The results showed that the best method was without centrifugation and with use of basic silica. Results from the analysis of the soil remediation workers´ blood showed PAHs in average concentrations of 0.05-6.47 ng/mL blood, with fluorene and biphenyl being the most abundant PAHs. The occupational groups (office, machine and sampling) had similar average concentrations of PAHs, with office workers being slightly less exposed. The PAHs blood profile did not reflect the PAHs profiles in contaminated soil from the area; the blood profiles had relatively higher abundances of low molecular weight PAHs, while the soils had higher relative concentrations of middle molecular weight PAHs. Both blood and soils had low relative concentrations of high molecular weight PAHs. Pyrene concentrations in blood and 1-hydroxypyrene metabolite concentrations in urine samples showed no correlation (linearity r2=0.045). Both blood and urine samples from the workers indicated a low exposure of PAHs. The method tested in this study can be used for analysis of a broad range of PACs and seems to be a better approach for studying the exposure of PACs than today’s methods analysing a few urine metabolites. But additional clean-up is suggested to improve the quantification of all blood samples. Further investigations are required to gain an understanding of normal, unexposed PACs levels in blood.

A alta prevalência de uso de cocaína, e o alarmante número de apreensões do entorpecente, trazem à tona a necessidade de se explorar novas formas de combate ao tráfico. A investigação dos componentes presentes nas amostras apreendidas tem sido bastante explorada, pois. para chegar ao consumidor final, a cocaína \"de rua\", além das etapas básicas de obtenção, muitas vezes é também submetida às etapas de adição de diluentes e de adulterantes. Sabendo-se que o maior número de laudos expedidos pelo Núcleo de Perícias Criminalísticas de Araçatuba é atribuído a exames relacionados com entorpecentes, e que para a cidade não há estudo a cerca dos componentes das amostras apreendidas de cocaína e suas referências geográficas, o presente trabalho teve por objetivo investigar os adulterantes presentes em 92 amostras de cocaína apreendidas na região de Araçatuba, no período de 2014 a 2015 empregando o método de extração líquido-líquido e análise por Cromatografia em fase Gasosa utilizando detector de Espectrometria de massas. Como resultado foram identificados, em ordem decrescente de recorrência, os adulterantes: cafeína, lidocaína, fenacetina, levamisol, carisoprodol, aminopirina, benzocaína metotrimeprazina e cloridrato de cetamina. Também foram identificados outros alcaloides como éster de metilecgonidina, cinamoilcocaínas e norcocaína. A maior parte das amostras analisadas demonstrou-se adulterada e em mais de 78% das amostras foi detectado o éster de metilecgonidina, substância formada a partir da pirólise, ou degradação térmica da cocaína. Foram elaborados mapas georreferenciados baseados nos sítios das apreensões, em que se pode visualizar que as mesmas ocorreram nas regiões periféricas das cidades abordadas, demonstrando a presença de três principais núcleos de densidade de apreensões, localizados na cidade de Araçatuba / The high prevalence of cocaine use, and its alarming number of seizures, shows the need to explore new tools for drug trafficking combat. Investigations about components presents in drug seized samples has been high explored, mainly because drug dealers used to add compounds on street cocaine, like diluents and adulterants. Knowing that the highest number of reports made on Núcleo de Perícias Criminalísticas de Araçatuba are related to narcotics, and that for this city there is no study about the components of the cocaine seized samples and its geographic references, the present work had the aim of investigating the adulterants present in 92 cocaine samples seized in the region of Araçatuba, from 2014 to 2015, using the method of liquid-liquid extraction and analysis by Gas Chromatography Mass Spectrometry. As a result, the adulterants identified: were caffeine, followed by lidocaine, phenacetin, levamisole, carisoprodol, aminopyrine, benzocaine methotrimeprazine and ketamine. Other alkaloids have also been identified as ecgonidine methy ester, cinnamoylcocaine and norcocaine. Most of the analyzed samples were adulterated and in more than 78% of them showed the presence of ecgonidine methyl ester, a compound formed from the cocaine pyrolysis, or thermal degradation. Georeferenced maps were made based on the seizure geographic coordinates, where it can be seen that they occurred in the peripheral regions of the cities, and the presence of three main seizure density areas, located in the city of Araçatuba.

Lisdexanfetamina (LDX) é um pró-fármaco estimulante de longa duração indicado para o tratamento dos sintomas do transtorno do déficit de atenção e hiperatividade e do transtorno da compulsão alimentar periódica. A hidrólise da ligação amida da LDX ocorre in vivo liberando a molécula terapeuticamente ativa d-anfetamina (d-ANF) e o aminoácido l-lisina. Visto que a LDX se biotransforma à d-ANF – um potente estimulante do sistema nervoso central com destaque tanto na clínica quanto na toxicologia – existe potencial para uso inadequado, abuso e desvio para fins não terapêuticos. Nos laboratórios de toxicologia, amostras biológicas com resultados positivos para anfetamina (ANF) são um desafio, uma vez que alguns testes toxicológicos podem detectar ANF devido à utilização de alguns medicamentos, dificultando a sua interpretação. Assim, são necessários métodos bioanalíticos eficientes aliados ao conhecimento farmacocinético, que permite a verificação da possibilidade de detecção, a estimativa da janela de detecção e as concentrações que podem ser alcançadas em diferentes matrizes biológicas. Dessa forma, neste trabalho, foram desenvolvidos métodos bioanalíticos para quantificação simultânea da LDX e de seu produto de biotransformação, a ANF, nas matrizes biológicas fluido oral, plasma e urina utilizando a cromatografia líquida acoplada a detector de massas sequencial (CL-EM/EM). A preparação de amostra é simples, utilizando a precipitação de proteínas para o plasma, com pouca quantidade de solvente orgânico, a diluição para o fluido oral e a filtração para urina, ambas com nenhuma quantidade de solvente orgânico. As curvas de calibração utilizando o padrão interno ANF deuterada apresentaram linearidade entre 1 e 128 ng/mL para o fluido oral e o plasma e entre 4 e 256 ng/mL para a urina. A menor concentração das curvas de calibração é igual ao limite inferior de quantificação. Precisão e exatidão intra e interdia ficaram dentro dos limites de ± 15% para os controles e ± 20% para o limite de quantificação. Os métodos foram seletivos e sem efeito residual, porém apresentaram um leve efeito matriz, frequentemente encontrado em métodos de CL-EM/EM. O método foi aplicado para análise das amostras do estudo farmacocinético da LDX e ANF nas matrizes biológicas fluido oral, plasma e urina após administração oral de LDX. Seis voluntários do sexo masculino coletaram amostras de fluido oral e plasma em tempos pré-determinados durante 72 horas e amostras de urina em intervalos pré-determinados durante 120 horas. Os dados foram avaliados de maneira não-compartimental e compartimental. Considerando a análise não-compartimental, a concentração máxima média da d-ANF foi quase seis vezes inferior no plasma em relação ao fluido oral e ocorreu em 3,8 e 4 horas, respectivamente, após a administração oral. A LDX atingiu a concentração máxima no plasma e no fluido oral em 1,2 e 1,8 horas após a administração oral, respectivamente, com um valor médio de pico de concentração quase duas vezes mais elevado no plasma em comparação com o fluido oral. A eliminação da d-ANF a partir do plasma e a partir do fluido oral foi semelhante, porém para LDX a eliminação a partir do fluido oral foi mais lenta, mesmo com concentrações mais baixas do que no plasma. A detecção da d-ANF ocorreu até 48-72 horas no plasma e fluido oral e até 120 horas em urina. Já para a LDX, a detecção ocorreu até 3, 5 e 12 horas no plasma, fluido oral e urina, respectivamente. LDX intacta e d-ANF foram detectadas nas três matrizes avaliadas. Na análise compartimental, o melhor ajuste de modelo foi observado para 1 compartimento para ambos os analitos tanto no plasma quanto no fluido oral. Houve uma correlação entre as concentrações do fluido oral e do plasma para d-ANF e entre as proporções de LDX intacta/d-ANF pelo tempo no plasma e no fluido oral. O método analítico desenvolvido pode ser aplicado em diferentes áreas do conhecimento a fim de certificar os resultados de uma análise de triagem positiva para ANF. Porém, para interpretação das situações tanto de triagem quanto de confirmação é necessário aliar o conhecimento farmacocinético gerado no trabalho, que demonstra se há a possibilidade de detecção na matriz analisada e por quanto tempo após a administração da LDX. Isto auxilia na diferenciação do uso de outros medicamentos derivados da ANF e do uso ilegal, para que as devidas providências legais e de manejos clínicos de tratamento e controle de dependência sejam tomadas quando necessário. / Lisdexamfetamine (LDX) is a long-acting prodrug stimulant indicated for the treatment of attention-deficit/hyperactivity disorder and binge-eating disorder symptoms. In vivo hydrolysis of lisdexamfetamine amide bond releases the therapeutically active d-amphetamine (d-AMPH) and the amino acid l-lysine. Since LDX biotransformation gives rise to d-AMPH - a potent stimulant of the central nervous system that stands out in clinical and toxicology - there is potential for misuse, abuse and diversion for non-therapeutic purposes. In laboratories of toxicology, biological samples with positive results for amphetamine (AMPH) are a challenge, since some toxicological tests can detect AMPH due to the use of some medications hindering the interpretation. Therefore, we need efficient bioanalytical methods combined with the pharmacokinetic knowledge, which allows to verify the possibility of detection, to assess the detection window and the concentrations that can be reached in different biological matrices. Hence, bioanalytical methods were developed for simultaneous quantification of LDX and its main biotransformation product AMPH in the biological matrices oral fluid, plasma and urine by liquid chromatography-mass spectrometry (LC-MS/MS). The sample preparation is simple, using protein precipitation for plasma, with a small amount of organic solvent, dilution for oral fluid and filtration to urine, both with no amount of organic solvent. Calibration curves using deuterated AMPH internal standard showed linearity between 1 and 128 ng/mL for oral fluid and plasma, and between 4 and 256 ng/mL for urine. The lowest concentration of the calibration curve is the lower limit of quantification. Intra and interday precision and accuracy were within the limits of ± 15% for controls and ± 20% for the limit of quantification. The methods were selective and no carry-over was observed, however with some matrix effect, often found in LC-MS/MS methods. The method was applied to analyze samples from LDX and AMPH pharmacokinetics study in the biological matrices oral fluid, plasma and urine following oral administration of LDX. Six male volunteers collected oral fluid and plasma samples at predetermined times during 72 hours and urine samples at pre-determined intervals during 120 hours. Data were evaluated through non-compartmental and compartmental analysis. Considering the noncompartmental analysis, the mean maximum concentration of d-AMPH was almost 6-fold lower in plasma than in oral fluid and occurred at 3.8 and 4 hours, respectively, after LDX administration. LDX maximum concentration was reached at 1.2 and 1.8 hours after LDX oral administration for oral fluid and plasma, respectively, with a mean peak concentration almost 2-fold higher in plasma when compared with oral fluid. Elimination of d-AMPH from oral fluid and from plasma were similar, albeit for LDX elimination from oral fluid was slower even with lower concentrations than plasma. Detection occurred until 48 to 72 hours in plasma and oral fluid and until 120 hours in urine for d-AMPH. Whereas for LDX, detection could be done for up to 3, 5 and 12 hours in plasma, oral fluid and urine, respectively. Intact LDX and d-AMPH were detected in the three evaluated matrices. In compartmental analysis, the best model fit was observed for 1-compartment model for both analytes in plasma and in oral fluid. There was a correlation between oral fluid and plasma d-AMPH concentrations and between intact LDX/d-AMPH ratios along time in plasma as well as in oral fluid. The bioanalytical methods developed can be applied in different fields of knowledge in order to ensure the results of a positive screening analysis for AMPH. Nevertheless, for interpretation of situations in both screening and confirmation tests is necessary to combine the pharmacokinetic knowledge produced in this study, which shows if there is the possibility of detection in the analyzed matrix and for how long after the administration of LDX. This results aid in the differentiation from other AMPH derived drugs use and from illegal use, so that appropriate legal action and clinical management strategies for treatments and control of dependence be taken when necessary.

<p>Mushrooms are believed to have a great potential for production of bioactive metabolites e. g. terpenes, a group of interesting compounds with diverse chemical properties such as antitumour and antibacterial activity. Cop6 is a terpene cyclase isolated from the mushroom <em>Coprinus cinereus</em> that catalyzes the cyclization of farnesyl diphosphate (FPP) to mainly α-cuprenene. In this study gas chromatography combined with mass spectroscopy (GC-MS) is used to analyze the product profile of Cop6 mutants created by PCR based site directed mutagenesis. The goal is to produce trichodiene, the parent hydrocarbon in the biosynthesis of trichothecene antibiotics and mycotoxins. Valine instead of tyrosine in amino acid position 195 resulted in cyclisation of (E)-β-Farnesene and (3Z,6E)-α-Farnesene besides the products of the wild type enzyme. Another mutant with aspartic acid instead of asparagine in position 224 resulted in the synthesis of β-Bisabolene except for α-cuprenene and methionine in position 74 instead of isoleucine killed the activity of the cyclase. Furthermore, an attempt to saturation of position 98 was made, resulting in four mutants. Two of them essentially killed the activity of the cyclase whereas two had minor effect of the product profile compared to the wild type. </p>

Mushrooms are believed to have a great potential for production of bioactive metabolites e. g. terpenes, a group of interesting compounds with diverse chemical properties such as antitumour and antibacterial activity. Cop6 is a terpene cyclase isolated from the mushroom Coprinus cinereus that catalyzes the cyclization of farnesyl diphosphate (FPP) to mainly α-cuprenene. In this study gas chromatography combined with mass spectroscopy (GC-MS) is used to analyze the product profile of Cop6 mutants created by PCR based site directed mutagenesis. The goal is to produce trichodiene, the parent hydrocarbon in the biosynthesis of trichothecene antibiotics and mycotoxins. Valine instead of tyrosine in amino acid position 195 resulted in cyclisation of (E)-β-Farnesene and (3Z,6E)-α-Farnesene besides the products of the wild type enzyme. Another mutant with aspartic acid instead of asparagine in position 224 resulted in the synthesis of β-Bisabolene except for α-cuprenene and methionine in position 74 instead of isoleucine killed the activity of the cyclase. Furthermore, an attempt to saturation of position 98 was made, resulting in four mutants. Two of them essentially killed the activity of the cyclase whereas two had minor effect of the product profile compared to the wild type.

In Ontario, fire investigators from the Office of the Fire Marshal (OFM) are responsible for determining the origin and cause of suspicious fires. As part of the investigation, fire debris samples are collected from the scene and analyzed by the Centre of Forensic Sciences. The standard practice is to collect items that are porous, highly absorbent or adsorbent with high surface areas as they allow for better retention of the ignitable liquids. The evidence typically collected includes carpets, cardboards, soils, cloths and other items that have not been impinged by flame such as beneath baseboards. These samples are analyzed for the presence of ignitable liquid residues which may be evidence that an accelerant was used at the fire. When a body is recovered from a fire it can provide another source from which to collect samples for analysis. These samples can be especially helpful in instances where the fire generated an intense heat which may cause a loss of ignitable liquid residues from the fire debris. The tissue samples have a greater likelihood of still containing residues as the organs and body fluids can act as a shield protecting the residues from volatilization. The purpose of this study is to validate whether a victim was alive or deceased at the time a fire was intentionally set by detecting presence or absence of gasoline residues within their lungs and heart blood post fire. It was hypothesized that only when a victim was alive and performing respiration would sufficient gasoline vapours enter the airways and bloodstream for detection postmortem. Contamination becomes a significant issue when these samples are collected at autopsy and this study aimed to determine the accuracy with which a gasoline signature can be interpreted following the collection and analysis of lung tissue and heart blood. Pig (Sus domesticus) carcasses were chosen as acceptable analogues for humans in this study. The experiments involved anaesthetizing a pig (with Animal Ethics Approval), exposing the pig to gasoline vapours for 10 minutes, and then euthanizing it. The carcass was clothed with a cotton t-shirt and placed in a house where additional gasoline was poured onto it. The house also contained two additional clothed pig carcasses which did not inhale gasoline vapours; one with gasoline poured directly onto it and the other with no gasoline exposure (negative control). Thermocouples were placed under each carcass and in the centre of each room at ceiling and floor level to record the temperature. The house was set ablaze and monitored by a volunteer fire service. After the fire had reached V flashover and was suppressed, the carcasses were collected and their lungs and heart blood excised at a necropsy. The lungs and heart blood were then placed into glass mason jars following the OFM protocol. The headspace from each sample was analyzed by thermal desorption-gas chromatography-mass spectroscopy to determine the presence or absence of a gasoline signature. Two full scale house fires were conducted in order to obtain three replicates. The results showed that only the lungs and heart blood from the pig that inhaled gasoline contained gasoline residues. This indicates that it is possible to determine a victim’s status at the time of the fire based on the detection of gasoline in the lungs and/or heart blood. It was also concluded that contamination of samples during an autopsy can be minimized by changing gloves before handling the internal tissues. The thermal data showed that the bodies act as an insulator and protects the underside as the temperatures under the carcasses did not exceed 30⁰C while the room reached over 900⁰C at the first full scale house fire. These results will impact the forensic community by demonstrating the importance of analyzing a deceased victim’s internal tissues for ignitable liquid residues post fire as they may provide evidence of an intentionally set fire as well as providing information about the victim’s status when a fire was started. These findings will have a direct impact to the OFM as additional evidence can be obtained by completing internal tissue analysis. This will intern impact the Centre of Forensic Science (CFS) as it confirms the importance of analyzing internal tissues in order to provide results to fire investigators. Finally these findings should be used to implement new protocols at the Coroner’s Office so contamination can be minimized during fire autopsies and accurate samples are collected and sent to the CFS for analysis. / UOIT

In this research we are following the thermo-chemical degradation of wood in the absence of oxygen. The objectives are to evaluate the influence of heating rates on pyrolysis products obtained from wood pyrolysis and to evaluate the influence of acid pre-treatment on pyrolysis products. Depending on the wood heating rates, pyrolysis can be categorized as Flash pyrolysis, Fast pyrolysis, and Slow pyrolysis. We have evaluated the volatile products obtained at different heating rates and the volatile products obtained from sulfuric acid pre-treatment by using gas chromatography- mass spectrometry (GC-MS). We have also performed thermo-gravimetric analysis (TGA) of raw wood samples and sulfuric acid pre-treated wood samples of Yellow Pine to determine the changes in weight in relation to change in temperature. Our results indicated that by using the Flash, Fast, and Slow heating rates, the overall volatile products obtained from wood pyrolysis (i.e. the overall list of all the compounds obtained from different temperature ranges in wood pyrolysis by using different heating rates) were the same, but the volatile products obtained at different temperature ranges like Room temperature-300°C, 300°C - 400°C, and 400°C -500°C in Flash, Fast, and Slow pyrolysis were different. Most of the volatile products obtained from the pyrolysis of untreated wood were phenols. Our results also indicated that the pretreatment of wood with sulfuric acid alters the charcoal properties and releases gaseous products including furan derivatives that are useful as fuels or fuel additives. The sulfuric acid (10%) pretreatment of wood followed by slow pyrolysis produced maximum yield of charcoal, indicated by the lowest mass % decrease of 58.234. The production of furan derivatives increased by using sulfuric acid pre-treatment, which is a good improvement for the production of Furanics, the furan based biofuels. The furan based biofuels are of increasing research interest because of their significant advantages over the first generation biofuels. The thermogravimetric analysis (TGA) results indicated that the acid pre-treatment altered the decomposition rate of pyrolysis and lowered the onset of temperature for decomposition. The use of thermal degradation of plants for creating chemicals and fuels is seeing renewed interest across the globe as it is considered carbon-neutral and it uses a renewable feedstock. The information obtained from this research work will also be valued by industries, such as charcoal and activated carbon producers, which currently perform biomass pyrolysis, by allowing them to form approaches that optimize their energy use and minimize waste.

Mejora del rendimiento de la nariz electrónica basada en espectrometría de masas mediante la incorporación del tiempo de retención cromatografico como una nueva dimensión de datosLa importancia del sentido de olor en la naturaleza y en la sociedad humana queda latente con el gran interés que se muestra en el análisis del olor y el gusto en la industria alimentaria. Aunque las aéreas mas interesadas son las de la alimentación y bebida, también se ha mostrado la necesitad para esta tecnología en otros campos como en el de la cosmética. Lamentablemente, el uso de los paneles sensoriales humanos o paneles caninos son costosos, propensos al cansancio, subjetivos, poco fiables e inadecuados para cuantificar, mientras que el análisis de laboratorio, a pesar de la precisión, imparcialidad y capacidad cuantitativa, necesita una labor intensa, con personal especializado y requiere de mucho tiempo. Debido a estos inconvenientes el concepto de olfato artificial generó un gran interés en entornos industriales.El término "nariz electrónica" se asocia con una serie de sensores de gases químicos, con una amplia superposición de selectividad para las mediciones de compuestos volátiles en combinación con los instrumentos informáticos de análisis de datos. La nariz electrónica se utiliza para proporcionar una información comparativa en vez de una cualitativa en un análisis, y porque la interpretación puede ser automatizada, el dispositivo es adecuado para el control de calidad y análisis. A pesar de algunos logros prometedores, los sensores de estado sólido de gas no han cumplido con sus expectativas. La baja sensibilidad y selectividad, la corta vida del sensor, la calibración difícil y los problemas de deriva han demostrado serias limitaciones. En un esfuerzo para mejorar los inconvenientes de los sensores de estado sólido, se han adoptado nuevos enfoques, utilizando diferentes sensores para la nariz electrónica. Sistemas de sensores ópticos, la espectrometría de movilidad iónica y la espectrometría infrarroja son ejemplos de técnicas que han sido probadas.Las narices electrónicas basadas en la espectrometría de masas (MS) aparecieron por primera vez en 1998 [B. Dittmann, S. y G. Nitz Horner. Adv. Food Sci. 20 (1998), p. 115], y representan un salto importante en la sensibilidad, retando a la nariz electrónica basada en sensores químicos. Este nuevo enfoque del concepto de una nariz electrónica usa sensores virtuales en forma de proporciones m/z. Una huella digital compleja y muy reproducible se obtiene en forma de un espectro de masas, que se procesa mediante algoritmos de reconocimiento de patrones para la clasificación y cuantificación. A pesar de que la nariz electrónica basada en la espectrometría de masas supera a la nariz electrónica clásica de sensores de estado sólido en muchos aspectos, su uso se limita actualmente a la instrumentación de laboratorio de escritorio. La falta de portabilidad no representará necesariamente un problema en el futuro, dado que espectrómetros de masas en miniatura se han fabricado ya en una fase de prototipado.Un inconveniente más crítico de la nariz electrónica basada en MS consiste en la manera en la que se analizan las muestras. La fragmentación simultánea de mezclas complejas de isómeros pueden producir resultados muy similares a raíz de este enfoque. Una nariz electrónica mejor sería la que combina la sensibilidad y el poder de identificación del detector de masas con la capacidad de separación de la cromatografía de gases. El principal inconveniente de este enfoque es de nuevo el coste y la falta de portabilidad de los equipos. Además de los problemas anteriores con la espectrometría de masas, el análisis de cromatografía de gases requiere mucho tiempo de medida.Para abordar estas cuestiones, se han reportado miniaturizaciones en cromatografía capilar de gases (GC) que hacen posible el GC-en-un-chip, CG-rápido y CG-flash que hacen uso de columnas cortas, reduciendo el tiempo de análisis a los tiempos de elución como segundos y, en algunos casos, se han comercializado. La miniaturización de la espectrometría de masas y cromatografía de gases tiene un gran potencial para mejorar el rendimiento, la utilidad y la accesibilidad de la nueva generación de narices electrónicas.Esta tesis se dedica al estudio y a la evaluación del enfoque del GC-MS para la nariz electrónica como un paso anterior al desarrollo de las tecnologías mencionadas anteriormente. El objetivo principal de la tesis es de estudiar si el tiempo de retención de una separación de cromatografía puede mejorar el rendimiento de la nariz electrónica basada en MS, mostrando que la adición de una tercera dimensión trae más información, ayudando a la clasificación de las pruebas. Esto se puede hacer de dos maneras: · comparando el análisis de datos de dos vías de espectrometría de masas con análisis de datos de dos vías de matrices desplegadas y concatenadas para los datos de tres vías y · comparando el análisis de datos de dos vías del espectrometría de masas con el análisis de datos de tres vías para el conjunto de datos tridimensionales.Desde el punto de vista de cromatografía, la meta será la de optimizar el método cromatográfico con el fin de reducir el tiempo de análisis a un mínimo sin dejar de tener resultados aceptables.Un paso importante en el análisis de datos multivariados de vías múltiples es el preprocesamiento de datos. Debido a este objetivo, el último objetivo será el de determinar qué técnicas de preprocesamiento son las mejores para y el análisis de dos y tres vías de datos.Con el fin de alcanzar los objetivos propuestos se crearon dos grupos de datos. El primero consiste en las mezclas de nueve isómeros de dimetilfenol y etilfenol. La razón de esta elección fue la similitud de los espectros de masas entre sí. De esta manera la nariz electrónica basada en espectrometría de masas sería retada por el conjunto de datos. También teniendo en cuenta el tiempo de retención de los nueve isómeros solos, las soluciones se hicieron, como si el conjunto de datos demostraría el reto si se usaría sólo el tiempo de retención. Por tanto, este conjunto de datos "artificiales" sostiene nuestras esperanzas en mostrar las mejoras de la utilización de ambas dimensiones, la MS (espectros de masas) y la GC (tiempo de retención).Veinte clases, representando las soluciones de los nueve isómeros se midieron en diez repeticiones cada una, por tres métodos cromatográficos, dando un total de 600 mediciones. Los métodos cromatográficos fueron diseñados para dar un cromatograma resuelto por completo, un pico coeluido y una situación intermediaria con un cromatograma resuelto parcialmente. Los datos fueron registrados en una matriz de tres dimensiones con las siguientes direcciones: (muestras medidas) x (proporción m/z) x (tiempo de retención). Por "colapsar" los ejes X e Y del tiempo de retención cromatográfica y los fragmentos m/z, respectivamente, se obtuvieron dos matrices que representan los espectros de masa regular y el cromatograma de iones totales, respectivamente. Estos enfoques sueltan la información traída por la tercera dimensión y el despliegue por lo que la matriz original 3D y la concatenación de las TIC y el espectro de masa media se han tenido en consideración como una forma de preservar la información adicional de la tercera dimensión en una matriz de dos dimensiones.Los datos fueron tratados mediante la alineación de picos, con una media de centrado y la normalización por la altura máxima y el área del pico, los instrumentos de pre-procesamiento que también fueron evaluados por sus logros.Para el análisis de datos de dos vías fueron utilizados el PCA, PLS-DA y fuzzyARTMAP. La agrupación de PCA y PARAFAC fueron evaluados por la relación intervariedad - intravariedad, mientras que los resultados mediante fuzzy ARTMAP fueron dados como el éxito de la las tasas de clasificación en porcentajes.Cuando PCA y PARAFAC se utilizaron, como era de esperar, el método de cromatografía resuelto (método 1) dio los mejores resultados globales, donde los algoritmos 2D funcionan mejor, mientras que en un caso más complicado (picos más coeluidos del método 3) pierden eficacia frente a métodos 3D.En el caso de PLS-DA y n-PLS, aunque los resultados no son tan concluyentes como los resultados del PCA y PARAFAC, tratándose de las diferencias mínimas, el modelo de vías múltiples PLS-DA ofrece un porcentaje de éxito en la predicción de ambos conjuntos de datos. También se recomienda el n-PLS en vez de utilizar datos desplegados y concatenados, ya que construye un modelo más parsimonioso.Para el análisis fuzzyARTMAP, la estrategia de votación empleada ha demostrado que al usar los espectros de masa media y la información del cromatograma de iones totales juntos se obtienen resultados más consistentes.En el segundo conjunto de datos se aborda el problema de la adulteración del aceite de oliva extra virgen con aceite de avellana, que debido a las similitudes entre los dos aceites es una de las más difíciles de detectar. Cuatro aceites extra virgen de oliva y dos aceites de avellana se midieron puros y en mezclas de 30%, 10%, 5% y 2% con los mismos objetivos mostrando que la adición de la extra dimensión mejora los resultados. Se han hechos cinco repeticiones para cada preparación, dando un total de 190 muestras: 4 aceites puros de oliva, 2 aceites puros de avellana y 32 adulteraciones de aceite de avellana en aceite de oliva, dando un total de 38 clases. Dos métodos cromatográficos fueron utilizados. El primero estaba dirigido a una completa separación de los componentes del aceite de oliva y empleó una separación con temperatura programable, mientras que el objetivo del segundo método fue un pico coeluido, por lo tanto fue contratada una temperatura constante de separación. Los datos fueron analizados por medio de la PCA, PARAFAC, PLS-DA y PLS-n.Como en el conjunto "artificial" de datos, el PCA y PARAFAC se analizaron por medio de la capacidad de clusterización, que mostró que los mejores resultados se obtienen con los datos desplegados seguido por los datos 3D tratados con el PARAFAC.Desde el punto de vista de optimización de la columna, los logros obtenidos por la columna corta está por debajo del enfoque de la columna larga, pero este caso demuestra una vez más que la adición de los incrementos de tercera dimensión mejoran la nariz electrónica basada en MS.Para el PLS-DA y n-PLS se evaluaron las tasas de éxito comparativamente, tanto para las corridas cromatográficas largas como para las cortas. Mientras que para la columna larga el mejor rendimiento es para los datos del cromatograma de iones totales (TIC), la columna corta muestra mejor rendimiento para los datos concatenados de los espectros de masa media y TIC. Además, la predicción de las tasas de éxito son las mismas para los datos TIC de columna larga como para los datos concatenados de la columna corta. Este caso es muy interesante porque demuestra que el enfoque PLS de la tercera dimensión mejora los resultados y, por otra parte, mediante el uso de la columna corta el tiempo de análisis se acorta considerablemente.Se esperan ciertos logros de la nariz electrónica. Por el momento, ninguno de esos enfoques se acercó lo suficiente para producir una respuesta positiva en los mercados. Los sensores de estado sólido tienen inconvenientes casi imposibles de superar. La nariz electrónica basada en espectrometría de masas tiene una falta de portabilidad y a veces sus logros son insuficientes, y el aparato del cromatógrafo de gases-espectrómetro de masas sufre problemas de portabilidad igual que espectrómetro de masas y toma mucho tiempo. El desarrollo de potentes algoritmos matemáticos durante los últimos años, junto con los avances en la miniaturización, tanto para MS y GC y mostrar cromatografía rápida cierta esperanza de una nariz electrónica mucho mejor.A través de este trabajo podemos afirmar que la adición del tiempo de retención cromatográfica como una dimensión extra aporta una ventaja sobre las actuales tecnologías de la nariz electrónica. Mientras que para los cromatogramas totalmente resueltos no se logran mejoras o la ganancia es mínima, sobre todo en la predicción, para una columna corta la información adicional mejora los resultados, en algunos casos, hacerlos tan bien como cuando una larga columna se utiliza. Esto es muy importante ya que las mediciones en un cromatógrafo de gases - espectrometro de masas se pueden optimizar para tramos muy cortos, una característica muy importante para una nariz electrónica. Esto permitiría el diseño de un instrumento de mayor rendimiento, adecuado para el control de calidad en líneas de productos.