[ES] Las células mesenquimales estromales (MSC) poseen una serie de cualidades inmunológicas, pro-angiogénicas y regenerativas que las convierten en un excelente candidato para el tratamiento de diversas patologías. A pesar de las pruebas contundentes obtenidas en modelos preclínicos que demuestran la actividad terapéutica de las MSC, los ensayos clínicos no han podido mostrar hasta ahora un beneficio consistente, probablemente debido a deficiencias metodológicas y a la falta de estandarización, así como a la variabilidad genética intrínseca a los estudios en humanos. Debido a ello, ha sido necesario profundizar en los mecanismos responsables del beneficio terapéutico y rediseñar las estrategias clínicas. En los últimos años, se ha observado que la reparación tisular mediada por las MSC se produce de forma paracrina, y se ha constatado que las vesículas extracelulares (EVs) secretadas por las MSC (EVMSC) son capaces de recapitular las propiedades inmunosupresoras de las células parentales. Además, las estrategias terapéuticas basadas en vesículas tienen grandes ventajas en términos de bioseguridad y producción en condiciones de grado clínico, reduciendo significativamente el coste de dichas terapias. Sin embargo, la dosis efectiva en grandes mamíferos, incluidos los humanos, es bastante elevada y la producción industrial de EVs se ve dificultada en parte, por la senescencia proliferativa que afecta a las MSC durante la expansión celular masiva. En este trabajo hemos intentado solventar los principales escollos de la terapia con EVs incrementando su potencial inmunosupresor y reduciendo por tanto la dosis efectiva. Este incremento se ha conseguido gracias a la sobreexpresión del factor inducible por hipoxia 1-alpha y al desarrollo de un medio de acondicionamiento en cultivo basado en citoquinas. Además, la inmortalización de las células secretoras mediante la transducción del gen de la telomerasa humana ha permitido tanto la estandarización del producto como su producción a gran escala. La eficacia de estas EVs ha sido testada en diferentes poblaciones celulares in vitro: linfocitos T, monocitos, células Natural Killer, macrófagos, células endoteliales y fibroblastos; y en dos modelos de ratón: hipersensibilidad retardada y colitis aguda inducida por TNBS. En conclusión, hemos desarrollado una fuente de EVs de larga duración que secreta grandes cantidades de vesículas con mayor capacidad inmunosupresora y antiinflamatoria, facilitando un producto terapéutico más estándar y fácil de producir para el tratamiento de enfermedades inflamatorias inmunomediadas. / [CA] Les cèl·lules mesenquimals estromals (MSC) posseeixen una sèrie de qualitats immunològiques, pro-angiogèniques i regeneratives que les converteixen en un excel·lent candidat per al tractament de diverses patologies. Tot i les proves contundents obtingudes en models preclínics que demostren l'activitat terapèutica de les MSC, els assaigs clínics no han pogut mostrar fins ara un benefici consistent, probablement degut a deficiències metodològiques i a la manca d'estandardització, així com a la variabilitat genètica intrínseca als estudis en humans. A causa d'això, ha calgut aprofundir en els mecanismes responsables del benefici terapèutic i redissenyar les estratègies clíniques. En els últims anys, s'ha observat que la reparació tissular intervinguda per les MSC es produeix de forma paracrina, i s'ha constatat que les vesícules extracel·lulars (EVs) secretades per les MSC (EVMSC) són capaços de recapitular les propietats immunosupressores de les cèl·lules parentals. A més, les estratègies terapèutiques basades en vesícules tenen grans avantatges en termes de bioseguretat i producció en condicions de grau clínic, reduint significativament el cost d'aquestes teràpies. No obstant això, la dosi efectiva en grans mamífers, inclosos els humans, és bastant elevada i la producció industrial de les EVs es veu dificultada en part, per la senescència proliferativa que afecta les MSC durant l'expansió cel·lular massiva. En aquest treball hem intentat solucionar els principals esculls de la teràpia amb EVs incrementant el seu potencial immunosupressor i reduint per tant la dosi efectiva. Aquest increment s'ha aconseguit gràcies a la sobreexpressió del factor induïble per hipòxia 1-alpha i a el desenvolupament d'un mitjà de condicionament en cultiu basat en citoquines. A més, la immortalització de les cèl·lules secretores mitjançant la transducció del gen de la telomerasa humana ha permès tant l'estandardització del producte com la seva producció a gran escala. L'eficàcia d'aquestes EVs ha estat testada en diferents poblacions cel·lulars in vitro: limfòcits T, monòcits, cèl·lules Natural Killer, macròfags, cèl·lules endotelials i fibroblasts; i en dos models de ratolí: hipersensibilitat retardada i colitis aguda induïda per TNBS. En conclusió, hem desenvolupat una font de EVs de llarga durada que secreta grans quantitats de vesícules amb major capacitat immunosupressora i antiinflamatòria, facilitant un producte terapèutic més estàndard i fàcil de produir per al tractament de malalties inflamatòries inmunomediades. / [EN] Mesenchymal stromal cells (MSC) possess several immunological, pro-angiogenic and regenerative qualities that make them an excellent candidate for the treatment of various pathologies. Despite compelling evidence from preclinical models demonstrating the therapeutic activity of MSCs, clinical trials have so far failed to show consistent benefit, probably due to methodological shortcomings and lack of standardisation, as well as the genetic variability intrinsic to human studies. As a result, it has been necessary to further investigate the mechanisms responsible for therapeutic benefit and to redesign clinical strategies. In recent years, it has been observed that MSC-mediated tissue repair occurs in a paracrine pathway, and it has been confirmed that extracellular vesicles (EVs) secreted by MSC (EVMSC) are able to recapitulate the immunosuppressive properties of the parental cells. Moreover, vesicle-based therapeutic strategies have great advantages in terms of biosafety and production under clinical-grade conditions, significantly reducing the cost of such therapies. However, the effective dose in large mammals, including humans, is quite high and the industrial production of EVs is hampered in part by the proliferative senescence that affects MSC during massive cell expansion. In this work, we have attempted to overcome the main challenges of EVs therapy by increasing their immunosuppressive potential and thus reducing the effective dose. This increase has been achieved by overexpression of hypoxia-inducible factor 1-alpha and the development of a cytokine-based culture conditioning medium. In addition, immortalization of secretory cells by transduction with the human telomerase gene has allowed both product standardisation and large-scale production. The efficacy of these EVs has been tested in different cell populations in vitro: T lymphocytes, monocytes, Natural Killer cells, macrophages, endothelial cells and fibroblasts; and in two mouse models: delayed-type hypersensitivity and TNBS-induced acute colitis. In conclusion, we have developed a long-lasting source of EVs that secretes large amounts of vesicles with enhanced immunosuppressive and anti-inflammatory capacity, providing a more standard and easier-to-produce therapeutic product for the treatment of immune-mediated inflammatory diseases. / Gómez Ferrer, M. (2022). Terapias innovadoras basadas en vesículas extracelulares derivadas de células madre mesenquimales modificadas genéticamente [Tesis doctoral]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/182560

Genome wide association studies (GWAS) have revolutionized our approach to mapping genetic determinants of complex human diseases. However, even with success from recent studies, we have typically been able to explain only a fraction of the trait heritability. GWAS are typically analysed by testing for the marginal effects of single variants. Consequently, it has been suggested that gene-gene interactions might contribute to the missing heritability of complex diseases. GWAS incorporating interaction effects have not been routinely applied because of statistical and computational challenges relating to the number of tests performed, genome-wide. To overcome this issue, I have developed novel methodology to allow rapid testing of pairwise interactions in GWAS of complex traits, implemented in the IntRapid software. Simulations demonstrated that the power of this approach was equivalent to computationally demanding exhaustive searches of the genome, but required only a fraction of the computing time. Application of IntRapid to GWAS of a range of complex human traits undertaken by the Wellcome Trust Case Control Consortium (WTCCC) identified several interaction effects at nominal significance, which warrant further investigation in independent studies. In an attempt to fine-map the identified interacting loci, I undertook imputation of the WTCCC genotype data up to the 1000 Genomes Project reference panel (Phase 1 integrated release, March 2012) in the neighbourhood of the lead SNPs. I modified the IntRapid software to take account of imputed genotypes, and identified stronger signals of interaction after imputation at the majority of loci, where the lead SNP often had moved by hundreds of kilobases. The X-chromosome is often overlooked in GWAS of complex human traits, primarily because of the difference in the distribution of genotypes in males and females. I have extended IntRapid to allow for interactions with the X chromosome by considering males and females separately, and combining effect estimates across the sexes in a fixed-effects meta-analysis. Application to genotype data from the WTCCC failed to identify any strong signals of association with the X-chromosome, despite known epidemiological differences between the sexes for the traits considered. The novel methods developed as part of this doctoral work enable a user friendly, computationally efficient and powerful way of implementing genome-wide gene-gene interaction studies. Further work would be required to allow for more complex interaction modelling and deal with the associated computational burden, particularly when using next-generation sequencing (NGS) data which includes a much larger set of SNPs. However, IntRapid is demonstrably efficient in exhaustively searching for pairwise interactions in GWAS of complex traits, potentially leading to novel insights into the genetic architecture and biology of human disease.

La maladie de Crohn (MC) est une maladie chronique et récidivante du tractus gastro-intestinal. Dans la population pédiatrique, elle est très souvent accompagnée d'un retard de croissance (jusqu'à 88%). La MC se manifeste souvent autour de la puberté d’où l’importance du retard de croissance linéaire à ce stade crucial du développement de l’enfant. Une des questions essentielles est de savoir si le retard de croissance peut persister à l'âge adulte. La littérature est inconsistante sur ce point. En ce qui concerne les facteurs de risque potentiels, les corticostéroïdes (CS) qui sont la première ligne de traitement pour la majorité des patients, ont été largement impliqués. Bien qu'il existe des explications démontrant le mécanisme d’action des corticostéroïdes sur la croissance linéaire, les études cliniques impliquant l'utilisation CS soit à un retard de croissance temporaire ou permanent restent controverser et limiter. Nous avons examiné cette relation importante dans notre étude présente. Les principaux objectifs de l'étude sont les suivants: 1. D’évaluer la fréquence du retard de croissance chez le jeune atteint de la maladie de Crohn et qui a reçu des corticostéroïdes (CS) au cours de son traitement et 2. D’évaluer les facteurs de risque associés au retard de croissance temporaire ou permanent dans cette population. Méthodes : Afin d’atteindre nos objectifs, on a mené une étude de cohorte rétrospective. Cette cohorte comprend des patients qui ont été diagnostiqués de la MC (avant l’âge de 18 ans) à la clinique de gastroentérologie du Centre Hospitalier-Universitaire Sainte-Justine (CHUSJ) à Montréal. Ces patients ont tous reçus des CS en traitement initial(en excluant les rechutes). Les dossiers médicaux des patients ont été examinés de façon prospective afin de d’acquérir des informations sur : 1. La taille à chaque visite médicale; 2. La durée du traitement des CS; 3. L’administration de médication concomitante; 4. D’autres variables cliniques telles que l’âge au diagnostic, le sexe, la localisation et le comportement de la maladie. Pour ceux qui avaient atteints l’âge de 18 ans et qui ne fréquentaient plus la clinique, leur taille finale a été obtenue en les contactant par téléphone. Leurs parents ont aussi été contactés afin d’obtenir leur taille. On a converti nos résultats en scores de Z ou scores-Z ajustée pour l’âge et le sexe en utilisant la classification 2007 de l’Organisation Mondiale de la Santé(OMS). On a aussi calculé les tailles adultes cibles avec les données que nous avons récoltées. La raison de tout cela était de rendre nos résultats comparables aux études antérieures et renforcer ainsi la validité de nos trouvailles. Les enfants avec un score de Z<-1.64 (qui correspond au 5ème percentile) ont été considérés comme ayant un retard de croissance temporaire. Les scores-Z pour les tailles adultes finales ont été calculés en utilisant les mêmes normes de référence selon le sexe pour les personnes âgées de 17,9 ans. Un z-score <-1,64 a aussi été utilisé pour classer les individus avec un retard permanent. Ajouter à cela, ceux ayant une taille adulte finale <8,5cm de leur taille adulte cible (estimée à partir des hauteurs parentales) étaient considérés comme ayant un retard de croissance permanent. Des analyses de régression logistiques ont été faites pour examiner les facteurs associés à un retard de croissance temporaire et/ou permanent. Résultats : 221 patients ont été retenus. L’âge moyen de diagnostic était de 12.4 années et l’âge moyen de prise de CS était de 12.7 années. La répartition par sexe avait une légère prédominance masculine 54.3% contre 45.7% pour le sexe féminin. La majorité des patients étaient d’âge pubère (62.9%). On a surtout des patients avec une prédominance de maladie de type inflammatoire (89.1%) et localisé au niveau de l’iléo-colon (60.2%). Presque tous avaient pris une médication concomitante (88.7%) et n’avaient subi aucune chirurgie (95.9%). 19% des patients avaient un retard de croissance temporaire. L'analyse univariée a suggéré que le plus jeune âge au moment du diagnostic de la maladie et l'âge précoce à l'administration de stéroïdes étaient associés à un risque accru de retard de croissance temporaire. L’administration de CS à un jeune âge a été la seule variable (dans l’analyse multivariée) associée à un risque élevé de retard de croissance temporaire. En comparant à ceux ayant reçu des CS après l’âge de 14 ans (tertile 3), l’administration de CS à un âge précoce est fortement associé à un risque de retard de croissance (<11.6ans, OR: 6.9, 95% CI: 2.2-21.6, p-value: 0.001; 11.8ans-14ans, OR: 5.4, 95% CI: 1.7-17.1, p-value: 0.004). 8 (5.8%) sur 137 des sujets avaient une taille adulte finale <8,5cm de leur taille adulte cible. Dans l’analyse de régression linéaire multivariée, seul la variable de la taille adulte cible était associé à un changement de la taille adulte finale. Conclusion : Nos résultats suggèrent que la fréquence du retard de croissance permanent chez les enfants atteint de la MC est très faible. Un retard temporaire ou permanent de la croissance n’ont pas été associés à une augmentation de la quantité de CS administrée bien que l'administration de CS à un âge précoce soit associée à un retard de croissance temporaire. / Crohn's disease (CD) is a chronic, relapsing disease of the gastrointestinal tract. In the pediatric population it is very often accompanied by growth retardation (up to 88%). CD occurs in children mainly around puberty making the impact of growth impairment vital at this crucial stage of development. One of the critical issues is whether growth delay may persist into adulthood. Literature on this has been inconsistent. With regards to potential risk factors, corticosteroids (CS), the first line of treatment in the majority of patients, have been widely implicated. Although there is considerable mechanistic evidence, clinical studies linking CS use to either temporary or permanent growth remain controversial and limited. We examined this important relationship in our present study. The major objectives of the study were: 1. To evaluate the frequency of growth retardation in children with Crohn's disease who were administered CS and 2. To evaluate the factors associated with either temporary or permanent growth impairment in this population. Methods: We carried out a retrospective cohort study in patients diagnosed at the gastroenterology clinics of Hospital Sainte-Justine, Montreal. Patients were children diagnosed with CD and administered CS during the entire disease course. The medical charts of the patients were prospectively examined to acquire information on: 1. Measures of height acquired at each visit to the clinic; 2. Courses of CS administered; 3. Administration of other concomitant medications; 4. Information on clinical variables such as age at diagnosis, gender, disease location and behavior at diagnosis etc. For those patients who had attained the age of 18 and who were no longer visiting the clinics, final heights were acquired by contacting them over telephone. Similarly, their parents were contacted to acquire their final heights. Z-scores for height adjusted for age and gender were estimated using the WHO 2007 classification. Children with z-scores <-1.64 were deemed temporarily growth impaired. Final adult height z-scores for the subjects were calculated using the same standards for gender-matched persons who were 17.9 years old. A z-score of <-1.64 was also used to assign individuals as permanently growth impaired. As an additional criteria, those whose final height were <8,5cm below the target height (estimated from parental heights) were deemed to be permanently growth impaired. Logistic regression analysis was carried out to examine factors associated with temporary and/or permanent growth impairment. Results: 221 patients were included. The average age of diagnosis was 12.4 years and the average age at CS start was 12.7 years. The majority of children were male (54.3%). The majority of them where of pubertal age (62.9%). Most patients had inflammatory disease (89.1%) and ileocolonic disease location (60.2%). Concomitant medications were administered to about 88.7% of the patients. A minority of patients underwent surgery (4.1%). 19% of the patients had temporary growth impairment. Univariate analysis suggested that early age at disease diagnosis and early age at steroid administration was associated with increased risk for temporary growth impairment. Early age at administration of steroids was the only variable (in multivariate analysis) associated with increased risk for temporary impairment. Compared to children who were administered steroids after age 14, children administered steroids earlier (<11.6yr, OR: 6.9, 95% CI: 2.2-21.6, p-value: 0.001; 11.8yr-14yr, OR: 5.4, 95% CI: 1.7-17.1, p-value: 0.004) were significantly at higher risks for growth impairment. Similarly, only 5.8% of the patients had final heights <8,5cm of the expected target height. On multivariate linear regression analysis, target height was the only variable associated with final adult height. Conclusion: Our results suggest that the frequency of permanent growth retardation in children with CD is very low. Neither temporary nor permanent growth impairment was associated with increasing CS administration, although administration of CS at an earlier age was associated with temporary growth impairment.

A doença Inflamatória Intestinal (DII) é uma desordem caracterizada pela inflamação crônica do trato gastrointestinal. Os dois principais tipos de DII são a Retocolite Ulcerativa (RCU) e a Doença de Crohn (DC) e ambas cursam com importantes alterações no estado nutricional (EN). O objetivo deste estudo foi identificar as diferenças na composição corporal entre pacientes com DC, RCU e indivíduos saudáveis, além de comparar o estado nutricional dos três grupos de pacientes, ajustando para fatores que podem interferir no EN, como o uso atual de corticosteróides, a atividade física, a atividade de doença, a idade e o sexo. Foi realizado um estudo transversal que incluiu 101 pacientes com DII (50 com DC e 51 com RCU) e 35 indivíduos saudáveis, selecionados no Ambulatório do Hospital Universitário Pedro Ernesto (HUPE) da Universidade do Estado do Rio de Janeiro (UERJ). Foram colhidas informações sócio-demográficas e pessoais, tais como: prática de atividade física, tabagismo, doenças pregressas e procedimentos cirúrgicos prévios. Outras informações necessárias à pesquisa foram coletadas em prontuário médico. A avaliação antropométrica foi realizada por meio das seguintes medidas: peso corporal; altura; circunferências do braço, da cintura (CC) e do quadril; dobras cutâneas do tríceps, subescápula, supra-ilíaca e da coxa; e circunferência muscular do braço (CMB). A análise da composição corporal foi realizada por meio da bioimpedância elétrica (BIA), utilizando-se o aparelho Biodynamics modelo 450. As variáveis laboratoriais analisadas foram: glicose, hemograma completo, perfil lipídico, proteínas totais, albumina, globulina, velocidade de hemossedimentação e proteína C reativa. O peso, o índice de massa corporal, a CC e o percentual de gordura corporal calculado a partir da aferição das dobras cutâneas, foram menores nos pacientes com DC, quando comparados aos indivíduos saudáveis e/ou aos pacientes com RCU. A CMB foi menor nos pacientes com DC e RCU quando comparados aos indivíduos saudáveis, porém sem apresentar diferenças entre os dois grupos de pacientes. Por BIA, verificou-se que os pacientes com DC apresentaram valores de massa magra, massa celular corpórea, massa extracelular, água corporal total e água extracelular menores quando comparados aos indivíduos saudáveis. Os níveis séricos de colesterol total, proteínas totais e albumina, e a contagem total de hemácias foram menores nos indivíduos com DC quando comparados aos indivíduos do grupo controle e/ou aos indivíduos do grupo da RCU. Os pacientes com RCU exibem composição corporal semelhante à da população saudável. Em contraposição, os pacientes com DC apresentam EN amplamente comprometido com depleção de gordura corporal e massa magra em relação aos demais indivíduos / Inflammatory Bowel Disease (IBD) is a disorder characterized by diffuse inflammation of the gastrointestinal tract. The two main types of IBD are ulcerative colitis (UC) and Crohn's disease (CD), both coursing with important changes in nutritional status (NS). The objective of this study was to identify differences in body composition between patients with CD, UC, and healthy subjects and to compare the NS of these three groups of patients, adjusting for factors that can interfere in NS such as current use of corticosteroids, physical activity, disease activity, age and sex. It was conducted a cross-sectional study which included 101 patients with IBD (50 with CD and 51 with UC) and 35 healthy subjects, selected at the Ambulatory of Pedro Ernesto University Hospital (HUPE) of the Rio de Janeiro State University (UERJ). Socio-demographic and personal information such as physical activity, smoking, prior diseases and previous surgical procedures were collected. Other necessary information for the research were collected from medical records. The anthropometric evaluation was carried out through the following measures: body weight; height; mid-arm, waist and hip circumferences; skinfold thickness of the triceps, subscapular, suprailiac, and thigh; and mid-arm muscle circumference (MAMC). The body composition analysis was performed by bioelectrical impedance (BIA) using the equipment Biodynamics model 450. The laboratory variables analyzed, included: glucose, complete blood count, lipid profile, total protein, albumin, globulin, erythrocyte sedimentation rate, and C-reactive protein. Weight, body mass index, waist circumference, and percentage body fat calculated from skinfold measurements were lower in CD patients compared to healthy subjects and/or the patients with UC. The MAMC was lower in patients with CD and UC compared to healthy subjects, but without showing differences between the two groups of patients. Through BIA, it was found that CD patients had values of lean body mass, body cell mass, extracellular mass, total body water, and extracellular water smaller when compared to healthy subjects. Seric levels of total cholesterol, total protein, and albumin, as well as red blood cell count and relative count of lymphocytes were lower in the individuals with CD than the individuals of the control group and/or the patients with UC. Patients with UC exhibit body composition similar to that of the healthy population. In contrast, CD patients have widely NS committed with depletion of body fat and lean mass in relation to other individuals.

A doença Inflamatória Intestinal (DII) é uma desordem caracterizada pela inflamação crônica do trato gastrointestinal. Os dois principais tipos de DII são a Retocolite Ulcerativa (RCU) e a Doença de Crohn (DC) e ambas cursam com importantes alterações no estado nutricional (EN). O objetivo deste estudo foi identificar as diferenças na composição corporal entre pacientes com DC, RCU e indivíduos saudáveis, além de comparar o estado nutricional dos três grupos de pacientes, ajustando para fatores que podem interferir no EN, como o uso atual de corticosteróides, a atividade física, a atividade de doença, a idade e o sexo. Foi realizado um estudo transversal que incluiu 101 pacientes com DII (50 com DC e 51 com RCU) e 35 indivíduos saudáveis, selecionados no Ambulatório do Hospital Universitário Pedro Ernesto (HUPE) da Universidade do Estado do Rio de Janeiro (UERJ). Foram colhidas informações sócio-demográficas e pessoais, tais como: prática de atividade física, tabagismo, doenças pregressas e procedimentos cirúrgicos prévios. Outras informações necessárias à pesquisa foram coletadas em prontuário médico. A avaliação antropométrica foi realizada por meio das seguintes medidas: peso corporal; altura; circunferências do braço, da cintura (CC) e do quadril; dobras cutâneas do tríceps, subescápula, supra-ilíaca e da coxa; e circunferência muscular do braço (CMB). A análise da composição corporal foi realizada por meio da bioimpedância elétrica (BIA), utilizando-se o aparelho Biodynamics modelo 450. As variáveis laboratoriais analisadas foram: glicose, hemograma completo, perfil lipídico, proteínas totais, albumina, globulina, velocidade de hemossedimentação e proteína C reativa. O peso, o índice de massa corporal, a CC e o percentual de gordura corporal calculado a partir da aferição das dobras cutâneas, foram menores nos pacientes com DC, quando comparados aos indivíduos saudáveis e/ou aos pacientes com RCU. A CMB foi menor nos pacientes com DC e RCU quando comparados aos indivíduos saudáveis, porém sem apresentar diferenças entre os dois grupos de pacientes. Por BIA, verificou-se que os pacientes com DC apresentaram valores de massa magra, massa celular corpórea, massa extracelular, água corporal total e água extracelular menores quando comparados aos indivíduos saudáveis. Os níveis séricos de colesterol total, proteínas totais e albumina, e a contagem total de hemácias foram menores nos indivíduos com DC quando comparados aos indivíduos do grupo controle e/ou aos indivíduos do grupo da RCU. Os pacientes com RCU exibem composição corporal semelhante à da população saudável. Em contraposição, os pacientes com DC apresentam EN amplamente comprometido com depleção de gordura corporal e massa magra em relação aos demais indivíduos / Inflammatory Bowel Disease (IBD) is a disorder characterized by diffuse inflammation of the gastrointestinal tract. The two main types of IBD are ulcerative colitis (UC) and Crohn's disease (CD), both coursing with important changes in nutritional status (NS). The objective of this study was to identify differences in body composition between patients with CD, UC, and healthy subjects and to compare the NS of these three groups of patients, adjusting for factors that can interfere in NS such as current use of corticosteroids, physical activity, disease activity, age and sex. It was conducted a cross-sectional study which included 101 patients with IBD (50 with CD and 51 with UC) and 35 healthy subjects, selected at the Ambulatory of Pedro Ernesto University Hospital (HUPE) of the Rio de Janeiro State University (UERJ). Socio-demographic and personal information such as physical activity, smoking, prior diseases and previous surgical procedures were collected. Other necessary information for the research were collected from medical records. The anthropometric evaluation was carried out through the following measures: body weight; height; mid-arm, waist and hip circumferences; skinfold thickness of the triceps, subscapular, suprailiac, and thigh; and mid-arm muscle circumference (MAMC). The body composition analysis was performed by bioelectrical impedance (BIA) using the equipment Biodynamics model 450. The laboratory variables analyzed, included: glucose, complete blood count, lipid profile, total protein, albumin, globulin, erythrocyte sedimentation rate, and C-reactive protein. Weight, body mass index, waist circumference, and percentage body fat calculated from skinfold measurements were lower in CD patients compared to healthy subjects and/or the patients with UC. The MAMC was lower in patients with CD and UC compared to healthy subjects, but without showing differences between the two groups of patients. Through BIA, it was found that CD patients had values of lean body mass, body cell mass, extracellular mass, total body water, and extracellular water smaller when compared to healthy subjects. Seric levels of total cholesterol, total protein, and albumin, as well as red blood cell count and relative count of lymphocytes were lower in the individuals with CD than the individuals of the control group and/or the patients with UC. Patients with UC exhibit body composition similar to that of the healthy population. In contrast, CD patients have widely NS committed with depletion of body fat and lean mass in relation to other individuals.

Affinity-based proteomics utilizes affinity binders to detect target proteins in a large-scale manner. This thesis describes a high-throughput method, which enables the search for biomarker candidates in human plasma and serum. A highly multiplexed antibody-based suspension bead array is created by coupling antibodies generated in the Human Protein Atlas project to color-coded beads. The beads are combined for parallel analysis of up to 384 analytes in patient and control samples. This provides data to compare protein levels from the different groups. In paper I osteoporosis patients are compared to healthy individuals to find disease-linked proteins. An untargeted discovery screening was conducted using 4608 antibodies in 16 cases and 6 controls. This revealed 72 unique proteins, which appeared differentially abundant. A validation screening of 91 cases and 89 controls confirmed that the protein autocrine motility factor receptor (AMFR) is decreased in the osteoporosis patients. Paper II investigates the risk proteome of inflammatory bowel disease (IBD). Antibodies targeting 209 proteins corresponding to 163 IBD genetic risk loci were selected. To find proteins related to IBD or its subgroups, sera from 49 patients with Crohn’s disease, 51 with ulcerative colitis and 50 matched controls were analyzed. From these targeted assays, the known inflammation-related marker serum amyloid protein A (SAA) was shown to be elevated in the IBD cases. In addition, the protein laccase (multi-copper oxidoreductase) domain containing 1 (LACC1) was found to be decreased in the IBD subjects. In conclusion, assays using affinity-based bead arrays were developed and applied to screen human plasma and serum samples in two disease contexts. Untargeted and targeted screening strategies were applied to discover disease-associated proteins. Upon further validation, these potential biomarker candidates could be valuable in future disease studies. / <p>QC 20180412</p>

Für die Therapie chronisch entzündlicher Darmerkrankungen (CED) ist die Diagnostik befallener Darmabschnitte und enteraler Komplikationen ebenso von Bedeutung, wie die Einschätzung der klinischen und endoskopischen Entzündungsaktivität. In einer Studie soll die Wertigkeit der Magnetresonanztomographie (MRT) untersucht werden, die Entzündungsaktivität CED anhand visueller Befunde und Komplikationen einzuschätzen. Außerdem soll überprüft werden, ob auf eine Kontrastierung des Darmes zugunsten eines höheren Patientenkomforts und einer schnelleren Untersuchung verzichtet werden kann. 64 Patienten mit bekannter oder vermuteter CED wurden vor und nach intravenöser Gd-DTPA-Injektion mit dem MR-Tomographen untersucht. Während 35 Patienten eine orale und rektale Kontrastierung mit Endoskopielösung erhielten, wurden 31 nicht enteral kontrastiert. 53 der untersuchten Patienten wurden zeitnah koloskopiert. Ein neu entwickelter MR-Aktivitätsindex (MRAI), die Kontrastmittelanreicherung in der Darmwand sowie die gemessenen Darmwanddicken wurden mit klinischen Indizes (CAI, CDAI) und dem Endoskopie-Aktivitätsindex (EAI) korreliert. Weiterhin wurden koronare Bilder aller Patienten bezüglich der Distension des Darmes und der Abgrenzbarkeit der Darmwand begutachtet. Im Vergleich mit dem EAI konnten signifikante Unterschiede für die Verteilung des Darmwand-Enhancements und der gemessenen Darmdicken nachgewiesen werden. Der MRAI zeigte eine Korrelation von Eta = 0,43 mit der klinischen Aktivität. Für Colitis ulcerosa-Patienten konnte ein Eta = 0,64 erstellt werden. Untersuchte, die eine Kontrastierung des Darmes erhielten, wiesen eine exzellente Korrelation (Eta = 0,76) zwischen MRAI und CAI / CDAI auf, während dieser Zusammenhang für Patienten ohne enterale Auffüllung fehlte. Weiterhin konnten signifikante Zusammenhänge zwischen enteraler Kontrastierung und der Distension des Darmes sowie der Abgrenzbarkeit der Darmwand gezeigt werden. Die Arbeit macht deutlich, daß es möglich ist, CED mittels MRT zuverlässig zu diagnostizieren und mit Hilfe des MRAI in ihrer klinischen und endoskopischen Entzündungsaktivität einzuschätzen. Dabei sollte auf die Anwendung eines enteralen Kontrastmittels nicht verzichtet werden. Ein Einsatz der MRT ist somit nicht nur bei der Diagnostik sondern auch zur Verlaufskontrolle der CED sinnvoll. / For the therapy of Inflammatory Bowel Diseases (IBD), not only the diagnosis of affected bowel segments and enteral complications but also the assessment of the clinical and endoscopic activity is important. The value of Magnetic Resonance Imaging (MRI) to asses the activity of IBD by visual findings and complications shall be determined by a clinical study. Furthermore shall be tested how the application of enteral contrast media affects patient comfort and examination time. 64 patients with known or supposed IBD were examined by MRI before and after intravenous injection of Gd-DTPA. 35 patients received oral and rectal contrast medium (2,5% mannitol solution) while 31 patients remaining without enteral replenishment. 53 patients underwent colonoscopy.A newly developed MR Activity Index (MRAI), based on visual findings, contrast-enhancement of the bowel wall and measured wall thickness were correlated with clinical (Crohn�s Disease Activity Index, CDAI; Colitis Activity Index, CAI) and endoscopic (Endoscopy Activity Index, EAI) activity. Coronal images of all patients were evaluated referring to bowel distension and demarcation of the bowel wall. The comparision with EAI shows significant differences in the distribution for wall contrast-enhancement and wall thickness. A good correlation is determined between the MRAI and the clinical activity (Eta = 0,43). Considering only patients with Ulcerative Colitis the correlation between MRAI and CAI shows Eta = 0,64. An excellent correlation of Eta = 0,76 between MRAI and CDAI / CAI for all patients with oral and enteral replenishment was found, while there was no correlation in the group, which did not receive mannitol solution. Significant correlations were also seen between the enteral mannitol solution replenishment and bowel distension and demarcation of the bowel wall. MRI shows good accuracy in detecting the changes the of IBD. The new developed MRAI allows an assessment of the activity of IBD. The results demonstrate that oral and enteral contrast media should be applied for MR examination of the abdomen. The utilization of MRI is furthermore useful in the follow up of IBD.

Ankylosing spondylitis (AS) is a common inflammatory arthritis of the spine and other affected joints, which is highly heritable, being strongly influenced by the HLA-B27 status, as well as hundreds of mostly unknown genetic variants of smaller effect. The aim of my research was to confirm some of the previously observed genetic associations and to identify new associations, many of which are in biological pathways relevant to AS pathogenesis, most notably the IL-23/T_H17 axis (IL23R) and antigen presentation (ERAP1 and ERAP2). Studies presented in this thesis include replication and refinement of several potential associations initially identified by earlier GWAS (WTCCC-TASC, 2007 and TASC, 2010). I conducted an extended study of IL23R association with AS and undertook a meta-analysis, confirming the association between AS and IL23R (non-synonymous SNP rs11209026, p=1.5 x 10-9, OR=0.61). An extensive re-sequencing and fine mapping project, including a meta-analysis, to replicate and refine the association of TNFRSF1A with AS was also undertaken; a novel variant in intron 6 was identified and a weak association with a low frequency variant, rs4149584 (p=0.01, OR=1.58), was detected. Somewhat stronger associations were seen with rs4149577 (p=0.002, OR=0.91) and rs4149578 (p=0.015, OR=1.14) in the meta-analysis. Associations at several additional loci had been identified by a more recent GWAS (WTCCC2-TASC, 2011). I used in silico techniques, including imputation using a denser panel of variants from the 1000 Genomes Project, conditional analysis and rare/low frequency variant analysis, to refine these associations. Imputation analysis (1782 cases/5167 controls) revealed novel associations with ERAP2 (rs4869313, p=7.3 x 10-8, OR=0.79) and several additional candidate loci including IL6R, UBE2L3 and 2p16.3. Ten SNPs were then directly typed in an independent sample (1804 cases/1848 controls) to replicate selected associations and to determine the imputation accuracy. I established that imputation using the 1000 Genomes Project pilot data was largely reliable, specifically for common variants (genotype concordence~97%). However, more accurate imputation of low frequency variants may require larger reference populations, like the most recent 1000 Genomes reference panels. The results of my research provide a better understanding of the complex genetics of AS, and help identify future targets for genetic and functional studies.