A radiação ultravioleta (UV) pode ser absorvida por diferentes moléculas celulares, incluindo o DNA no qual provoca distorções estruturais. As lesões mais comuns induzidas pela radiação UV são o ciclobutano de pirimidina (CPD) e o fotoproduto (6-4)-pirimidina-pirimidona [(6-4)PPs]. Estas lesões podem ser reparadas pela fotorreativação, caracterizada por ter uma única proteína (fotoliase) que remove lesões empregando luz visível (320-500 nm) como fonte de energia. Foram identificados dois tipos de fotoliases que diferem por sua especificidade ao substrato: CPD-fotoliase e (6-4)-fotoliase. Um outro mecanismo de reparo é o reparo por excisão de nucleotídeos (NER), um mecanismo que envolve múltiplos passos e proteínas. Enquanto os efeitos genotóxicos da UVC e UVB já estão relativamente esclarecidos e bem aceitos, ainda existem controvérsias sobre a genotoxicidade da radiação UVA, devido ao fato de ser fracamente absorvida pelo DNA. Alguns autores acreditam que os seus principais efeitos são gerados de forma indireta pela produção de espécies reativas de oxigênio enquanto outros acreditam que a UVA pode gerar danos ao DNA de forma direta, provocando a formação de dímeros de pirimidina. O objetivo deste trabalho foi verificar os efeitos genotóxicos da radiação UVA em fibroblastos humanos deficientes e proficientes em NER utilizando adenovírus recombinantes contendo uma ou outra fotoliase para verificar se as lesões CPD e (6-4)PP são geradas pela UVA e se elas teriam alguma importância nas respostas verificadas após irradiação. Foi verificado que as células deficientes no gene XPA são mais sensíveis à radiação UVA quando comparadas às células selvagens. Por meio da detecção imunológica, confirmamos a geração das lesões CPD, (6-4)PP e Dewar, fotoisômero da lesão (6-4)PP, após irradiação com UVA no genoma de células humanas. Empregando vetores adenovirais para transdução de fotoliase específica para lesões tipo CPD ou (6-4)PP, confirmamos que de fato essas lesões são formadas em células humanas deficientes em reparo de DNA após irradiação com UVA. Além disso, esses vírus permitiram verificar a relevância biológica dessas lesões na indução de morte celular em células XP-A irradiadas. De fato, os dados indicam que para doses baixas de radiação UVA essas lesões desempenham um importante papel na indução de morte. Não podemos descartar, porém, que lesões indiretas (provavelmente geradas por estresse oxidativo) também tenham papel na indução de morte pela radiação UVA, o que parece ser mais importante a doses médias e altas dessa radiação. / Ultraviolet radiation (UV) is absorbed by different cellular molecules, including DNA in which induces structural distortions. The most common lesions induced by UV radiation are the cyclobutane pyrimidine (CPD) and the photoproduct (6-4)-pyrimidine-pyrimidone [(6-4)PP]. These lesions can be repaired by the photoreactivation, characterized by a single protein (photolyase) that removes lesions using visible light (320-500 nm) as energy source. Two types of photolyases had been identified that differ by their substrate specificity: CPD-photolyase and (6-4)-photolyase. Another repair mechanism is the nucleotide excision repair (NER), a mechanism that involves multiple steps and proteins. While the genotoxic effects of UVB and UVC are already relatively well-understood and accepted, there is still controversy about the genotoxicity of UVA radiation, due to its low absorption by DNA. Some authors believe that the major effects are generated indirectly by the production of reactive oxygen species, while others believe that UVA can cause damage to DNA directly, inducing the formation of pyrimidine dimers. The aim of this study was to assess the genotoxic effects of UVA radiation in human fibroblasts deficient and proficient in NER, using recombinant adenovirus expressing the photolyases to verify if CPDs and (6-4)PPs are generated by UVA and whether they had any importance in the responses observed after irradiation. It was found that cells deficient in the XPA gene are more sensitive to UV radiation compared to wild type cells. By immunological detection, we confirm the generation of CPD, (6-4)PP and Dewar, photoisomer of the (6-4)PP lesion, in the genome of human cells after irradiation with UVA. Using adenoviral vectors for the transduction of photolyases specific for CPD or (6-4)PP lesions, we confirm that in fact these lesions are generated in human cells deficient in DNA repair after irradiation with UVA. Moreover, these viruses allowed us to verify the biological relevance of these lesions in the induction of cell death in irradiated XP-A cells. In fact, our data indicates that for low doses of UVA radiation, these lesions play important roles in the induction of death. We cannot rule out, however, that indirect lesions (probably caused by oxidative stress) could also have a role in the induction of death by UVA radiation, which seems to be more important in intermediate and high doses of this radiation.

Neste trabalho, métodos ab initio multiconfiguracionais de alto nível com extenso conjunto base e inclusão de correções relativísticas foram empregados para estudar vários sistemas diatômicos contendo metais de transição. As abordagens de Teoria de Pertur- bação de Segunda Ordem Multiconfiguracional (CASPT2) ou sua versão Multi-State (MS-CASPT2), baseadas em funções de onda do tipo Complete-Active-Space Self- Consistent-Field (CASSCF) foram utilizadas, com o conjunto base do tipo Orbitais Naturais contraídas em ambiente relativístico (ANO - RCC) com qualidade quádrupla- , para se estudar esses sistemas. Em relação aos dímeros de metais de transição homonucleares (Re2, Tc2, Ta2, Mo2 e W2), caracterizamos seu estado fundamental e diversos estados excitados através das curvas de energia potencial, constantes espectroscópicas e ordens de ligação efetiva. Todos os dímeros estudados por nós apresentam multiplicidades de ligação acima de quatro. Para esses sistemas também estudamos os efeitos do desdobramento causado pelo acoplamento spin-órbita com o intuito de determinar inequivocadamente a simetria do estado fundamental e, também, de auxiliar na interpretação dos espectros experimentais, quando existentes. Sobre as diatômicas formadas pela junção de um átomo de metal de transição e um elemento do grupo principal, enfocamos principalmente os nitretos e os boretos de metais de transição (CoN, MnN, TcN e RhB). Da mesma maneira, os sistemas foram descritos em termos de suas curvas de energia potencial e constantes espectroscópicas e foram comparadas com outros resultados teóricos e experimentais. Todas as moléculas estudadas nessa parte são caracterizadas por ligações triplas, com um par de elétrons sobre o átomo não metálico e os elétrons restantes localizados sobre o metal, acoplados de diferentes formas / In this work, high level ab initio multiconfigurational methods with extensive basis set and inclusion of relativistic e¤ects were employed to study several diatomic systems containing transition metals. The Multiconfiguration Second Order Perturbation Theory (CASPT2) or its Multi-State version (MS-CASPT2) approaches, based on Complete- Active-Space Self-Consistent-Field (CASSCF), were employed, with the Atomic Natural Orbital contracted in a relativistic environment (ANO-RCC) with quadruple- quality, in order to study these systems. In relation to the homonuclear dimers of transition metals atoms (Re2, Tc2, Ta2, Mo2, and W2), we have characterized their ground state and several excited states through potential energy curves, spectroscopic constants and e¤ective bond orders. All dimers we studied have the multiplicity of the chemical bond above four. To these kind of systems, we have also studied the splitting caused by spin-orbit coupling with the the aim of determine the symmetry of the ground state and help in the interpretation of the experimental spectras. About the diatomic formed by joining of a transition metal atom and an atom of the main group, we have focused, mainly, the transition metal nitrites and borides (CoN, MnN, TcN, and RhB) In the same way, these systems were described in terms of their potential energy curves, spectroscopic constants and wavefunctions and we have com- pared to other theoretical and experimental results. All molecules studied in this part were characterized as triple bonded, with a pair of electrons on the non–metalic center and the remaining electrons localized on the metal, coupled on di¤erent forms

Submitted by (lucia.rodrigues@ufrpe.br) on 2017-02-15T12:17:00Z No. of bitstreams: 1 Jose Adonias Alves de Franca.pdf: 508331 bytes, checksum: 66575664ead63f245fd269c90a1457a0 (MD5) / Made available in DSpace on 2017-02-15T12:17:00Z (GMT). No. of bitstreams: 1 Jose Adonias Alves de Franca.pdf: 508331 bytes, checksum: 66575664ead63f245fd269c90a1457a0 (MD5) Previous issue date: 2010-03-04 / In the course of 1,4-naphthoquinone nucleus studies, was performed the palladium catalyzed allylic oxidation procedure to obtain a heterociclic ring containing nitrogen. Some new compounds were found during the course of these studies, including an improvement in the nor-lapachol condensation reaction between lausone and isobutyraldehyde. A new methodology was also developed to obtain naphthoquinone dimers, with the synthesis of four new entities. The compounds were tested as inhibitors on human topoisomese I I enzyme and in Artemia salina toxicity tests. / No decorrer dos estudos com núcleos 1,4-naftoquinonas, explorou-se uma metodologia para síntese de anel nitrogenado baseado em reações de oxidação alílica catalisada por paládio. Foi possível a obtenção de alguns compostos inéditos na literatura durante estes estudos, e a reação de obtenção do nor-lapachol através da condensação da lausona com isobutiraldeído foi significativamente melhorada. Desenvoveu-se uma nova metodologia para a formação de moléculas diméricas da naftoquinona, sendo 4 inéditas. Os compostos foram testados frente à enzima topoisomerase humana II e em testes de toxicidade utilizando Artemia salina.

Amyotrophic lateral sclerosis (ALS) is a debilitating, incurable, neurodegenerative disease characterized by degradation of motor neurons leading to paralysis and ultimately death in ~3-5 years. Approximately 10% of ALS cases have a dominant inheritance pattern, termed familial ALS (fALS). Mutations in the gene encoding the dimeric superoxide scavenger Cu, Zn superoxide dismutase (SOD), were found to be associated with ~20% of fALS cases. Over 110 predominantly missense SOD mutations lead to fALS by an unknown mechanism; however, it is thought that mutant SOD acquires a toxic gain of function. Mice as well as human post mortem studies have identified mutant SOD-rich aggregates in affected neurons, leading to the hypothesis that mutations in SOD increase the tendency of the protein to form toxic aggregates. SOD has a complex maturation process whereby the protein is synthesized in an apo or demetalated state, followed by formation of an intramolecular disulfide bond and binding of Zn2+ and Cu2+. Each of these post-translational modifications increases the stability of the protein. SOD has been shown to aggregate more readily from destabilized immature states, including the apo state both with and without the disulfide bond, highlighting the importance of these states. Thermal unfolding monitored by differential scanning calorimetry (DSC) and chemical denaturation monitored by optical spectroscopy were used to elucidate the folding mechanism and stability of both the apo SOD disulfide-intact and disulfide-reduced states. Chemically and structurally diverse fALS-associated mutants were investigated to gain insights into why mutant SODs may be more prone to misfold and ultimately aggregate. The mutations were introduced into a pseudo wild-type (PWT) background lacking free cysteines, resulting in highly reversible unfolding amenable to accurate thermodynamic analysis. Similarly to what was previously described for fully metallated (holo) SODs, chemical denaturation of the apo disulfide-intact SODs is well described by a 3-state dimer mechanism with native dimer, monomeric intermediate and unfolded monomer populated at equilibrium. Although removal of metals has a relatively small effect on the stability of the dimer interface, the stability of the monomer intermediate is dramatically reduced. Thermal unfolding of some disulfide-intact apo SOD mutants as well as PWT is well described by a 2-state dimer mechanism, while others unfold via a 3-state mechanism similar to chemical denaturation. All but one of the studied disulfide-intact apo mutations are destabilizing as evidenced by reductions in ΔG of unfolding. Additionally, several mutants show an increased tendency to aggregate in thermal unfolding studies through increased ratios of van’t Hoff to calorimetric enthalpy (HvH/ Hcal ). The effects of the mutations on dimer interface stability in the apo disulfide-intact form were further investigated by isothermal titration calorimetry (ITC) which provided a quantitative measure of the dissociation constant of the dimer (Kd). ITC results revealed that disulfide-intact apo SOD mutants generally have increased Kd values and hence favor dimer dissociation to the less stable monomer which has been proposed to be a precursor to toxic aggregate formation. Reduction of the disulfide bond in apo SOD leads to marked destabilization of the dimer interface, and both thermal unfolding and chemical denaturation of PWT and mutants are well described by a 2-state monomer unfolding mechanism. Most mutations destabilize the disulfide-reduced apo SOD to such an extent that the population of unfolded monomer under physiological conditions exceeds 50%. The disulfide-reduced apo mutants show increased tendency to aggregate relative to PWT in DSC experiments through increased HvH /Hcal, low or negative change in heat capacity of unfolding and/or decreased unfolding reversibility. Further evidence of enhanced aggregation tendency of disulfide-reduced apo mutants was derived from analytical ultracentrifugation sedimentation equilibrium experiments that revealed the presence of weakly associated aggregates. Overall, the results presented here provide novel insights into SOD maturation and the possible impact of stability on aggregation.

Amyotrophic lateral sclerosis (ALS) is a debilitating, incurable, neurodegenerative disease characterized by degradation of motor neurons leading to paralysis and ultimately death in ~3-5 years. Approximately 10% of ALS cases have a dominant inheritance pattern, termed familial ALS (fALS). Mutations in the gene encoding the dimeric superoxide scavenger Cu, Zn superoxide dismutase (SOD), were found to be associated with ~20% of fALS cases. Over 110 predominantly missense SOD mutations lead to fALS by an unknown mechanism; however, it is thought that mutant SOD acquires a toxic gain of function. Mice as well as human post mortem studies have identified mutant SOD-rich aggregates in affected neurons, leading to the hypothesis that mutations in SOD increase the tendency of the protein to form toxic aggregates. SOD has a complex maturation process whereby the protein is synthesized in an apo or demetalated state, followed by formation of an intramolecular disulfide bond and binding of Zn2+ and Cu2+. Each of these post-translational modifications increases the stability of the protein. SOD has been shown to aggregate more readily from destabilized immature states, including the apo state both with and without the disulfide bond, highlighting the importance of these states. Thermal unfolding monitored by differential scanning calorimetry (DSC) and chemical denaturation monitored by optical spectroscopy were used to elucidate the folding mechanism and stability of both the apo SOD disulfide-intact and disulfide-reduced states. Chemically and structurally diverse fALS-associated mutants were investigated to gain insights into why mutant SODs may be more prone to misfold and ultimately aggregate. The mutations were introduced into a pseudo wild-type (PWT) background lacking free cysteines, resulting in highly reversible unfolding amenable to accurate thermodynamic analysis. Similarly to what was previously described for fully metallated (holo) SODs, chemical denaturation of the apo disulfide-intact SODs is well described by a 3-state dimer mechanism with native dimer, monomeric intermediate and unfolded monomer populated at equilibrium. Although removal of metals has a relatively small effect on the stability of the dimer interface, the stability of the monomer intermediate is dramatically reduced. Thermal unfolding of some disulfide-intact apo SOD mutants as well as PWT is well described by a 2-state dimer mechanism, while others unfold via a 3-state mechanism similar to chemical denaturation. All but one of the studied disulfide-intact apo mutations are destabilizing as evidenced by reductions in ΔG of unfolding. Additionally, several mutants show an increased tendency to aggregate in thermal unfolding studies through increased ratios of van’t Hoff to calorimetric enthalpy (HvH/ Hcal ). The effects of the mutations on dimer interface stability in the apo disulfide-intact form were further investigated by isothermal titration calorimetry (ITC) which provided a quantitative measure of the dissociation constant of the dimer (Kd). ITC results revealed that disulfide-intact apo SOD mutants generally have increased Kd values and hence favor dimer dissociation to the less stable monomer which has been proposed to be a precursor to toxic aggregate formation. Reduction of the disulfide bond in apo SOD leads to marked destabilization of the dimer interface, and both thermal unfolding and chemical denaturation of PWT and mutants are well described by a 2-state monomer unfolding mechanism. Most mutations destabilize the disulfide-reduced apo SOD to such an extent that the population of unfolded monomer under physiological conditions exceeds 50%. The disulfide-reduced apo mutants show increased tendency to aggregate relative to PWT in DSC experiments through increased HvH /Hcal, low or negative change in heat capacity of unfolding and/or decreased unfolding reversibility. Further evidence of enhanced aggregation tendency of disulfide-reduced apo mutants was derived from analytical ultracentrifugation sedimentation equilibrium experiments that revealed the presence of weakly associated aggregates. Overall, the results presented here provide novel insights into SOD maturation and the possible impact of stability on aggregation.

No description available.

The strong electromagnetic field that is induced at the surface of a plasmonic nanoparticle can be utilized for many important applications, including spectroscopic enhancement and electromagnetic waveguides. The focus of this thesis is to study some of the properties of induced plasmonic fields around metal nanoparticles. Current methodologies for fabricating nanoparticles are discussed, including lithography and colloidal synthesis. This dissertation includes studies on plasmonic driven nanoparticle motion of surface supported gold nanoprisms from a substrate into solution via a femtosecond pulse. The mechanism of particle motion is discussed and the stability of the unprotected nanoprisms in solution is studied. Fundamental plasmonic near-field coupling between two plasmonic nanoparticles is also examined. Experimental results using electron beam lithography fabricated samples are used to explicitly describe the plasmonic coupling between dimers as a function of the nanoparticle size, shape, and orientation. These variables are systematically studied and the dependence is compared to mathematically derived functional dependencies in order to model and predict the effects of plasmonic coupling. As an extension, the coupling between plasmonic nanoparticles is shown in a common application, surface enhanced Raman scattering. The final chapter is devoted to an investigation of the nature of nanocatalysis, homogeneous and heterogeneous, for several reactions using metal nanoparticles.

The fullerene cage provides an ideal, isolated environment for trapping spin active atoms such as nitrogen or phosphorous. Alignment of these endohedral fullerenes in linear arrays would have applications in quantum computing as the interactions between spin-active molecules can be easily controlled. Self-assembled molecular networks such as block copolymers, Langmuir-Blodgett films, and self-assembled monolayers are ideal for this purpose as the spacing and geometry can be easily tuned. This dissertation will discuss using each of these methods to achieve alignment or orientation of fullerenes for application in quantum information processing.

No description available.

El present treball té com objectiu l'obtenció de materials entrecreuats conservant una mesofase cristall líquid fixada, comunment denominats LCTs. La majoria de LCTs s'obtenen per entrecreuament de reïnes epoxi cristall líquid amb amines aromàtiques primàries. L'entrecreuament dins de la mesofase porta a materials amb un menor coeficient d'expansió tèrmica i en alguns casos amb un augment considerable del mòdul d'emmagatzematge. L'orientació dels LCTs per entrecreuament dins d'un camp magnètic porta a materials anisòtrops amb una millora de les propietats mecàniques en la direcció del camp aplicat. En aquest cas, s'han sintetitzat sis sèries de monòmers diepoxídics mesomorfs amb estructura de dímer i que contenen un grup imina dins la unitat mesogènica. S'ha estudiat la influència de la diferent llargària de l'espaciador central i la incorporació de grups èter i èster als extrems del mesògen en el comportament mesomorf. L'estudi de les característiques de cristall líquid s'han caracteritzat mitjançant calorimetria diferncial d'escombrat, microscopia òptica de llum polaritzada i difracció de raigs X. A més d'aquestes tècniques, s'han caracteritzat les propietats mecàniques dels LCTs obtinguts mitjançant anàlisi termodinamomecànica. Dues de les sèries han mostrat mesofases esmèctiques i la resta únicament una mesofase nemàtica. Els resultats obtinguts confirmen la importància de la polaritat del mesogen i de la posició del grup ester entre l'espaciador central i els mesògens per a la formació de mesofases esmèctiques.S'han obtingut LCTs a partir de l'entrecreuament d'aquest monòmers amb cantitats estequiomètriques de 2,4-diaminotoluè, 4,4'-aminoacetofenona azina, i 2,4-toluendiisocianat sol i catalitzat per 4-N,N-dimetilaminopiridina. També s'han obtingut LCTs per entrecreuament amb 4-N,Ndimetilaminopiridina i diazabiciclo[2,2,2]octà en quantitats catalítiques. Els LCTs obtinguts s'han caracterizat per fixar majoritàriament ordenacions nemàtiques i en alguns casos ordenacions esmèctiques C. En els LCTs obtinguts s'ha posat de manifest la importància de la polaritat del mesogen per l'obtenció de LCTs i de la posició del grup ester entre l'espaciador central i els mesògens per a la formació de LCTs amb ordenacions esmèctiques.S'han estudiat les propietats mecàniques dels LCTs entrecreuats amb 2,4-diaminotoluè, 4-N,N-dimetilaminopiridina i diazabiciclo[2,2,2]octà. S'han comparat tres tipus diferents de materials, materials isòtrops, orientats en microdominis i materials macroscòpicament orientats. S'han obtingut graus d'orientació petits, tot i que els materials orientats van mostrar anisotropia en el coeficient d'expansió tèrmica.Obtention of LCTs from liquid crystal epoxy resins with dimeric structure. / The search for new materials with unusual mechanical and thermal properties led to research into liquid crystalline thermosets (LCT's). LC epoxies are the monomers that have been most frequently studied to obtain LCT's. If the crosslinking is carried out in the mesophase, the LCTs obtained have unusual mechanical and thermal properties, low shrinkage upon cure, low thermal expansion coefficients, low dielectric constants and enhanced reaction rates because the ordered structures mean that the reacting groups are close to one another. Several publications describe the physical properties of oriented and unoriented LCT's. Macroscopically oriented LCTs obtained by curing in the mesomorphic state inside a magnetic field led to thermal expansion coefficient and storage modulus having anisotropic characteristics. Thus, the thermal expansion coefficient of macroscopically oriented materials must be lower than that of unoriented materials and the storage modulus must be expected to increase considerably in the direction of the orientation. I have synthesized six series of liquid-crystalline epoxy resins with aromatic azomethine groups and dimeric architecture, and varied the length of the alkyl spacer. The liquid crystal behaviour of these dimeric glycidylic compounds was studied by diferential scanning calorimetry (DSC), hot stage polarized optical microscopy (POM) and X-Ray Diffraction (WAXS). Two series of them show smectic mesophases and the other show nematic mesophase. From the results we have confirmed the importance of the polarization of the mesogenic groups and the presence of an ester group in the inner position in the formation of smectic mesophases.I obtained LCT's from these monomers by isothermal curing with equimolecular amounts of 2,4-diaminotoluene, 4,4'-aminoacetophenone azine, and 2-4-toluendiisocyanate alone and catalized with 4-N,N-dimethylaminopyridine. Another LCT's have obtained by isothermal curing with catalytic amounts of 4-N,N-dimethylaminopyridine or diazabicicle[2,2,2]octane. By curing these monomers with primary and tertiary amines we make clear the polarization of the mesogenic groups and the presence of an ester group in the inner position are also determinant to obtain LCTs with a different degree of order. Most monomers produced nematic-like networks, but in one case smectic C mesophase was also locked.Finally, the mechanical characterization of the LCTs obtained by curing with 2,4-diaminotoluene, 4-N,N-dimethylaminopyridine and diazabicicle[2,2,2]octane was studied by thermodinamicmechanical analysis. The orientation experiments were made by conducting the curing in the same conditions in a NMR probe with a magnetic field of 7.1 T. I compare isotropic materials, LCTs and LCTs obtained inside a magnetic field. Low orientation degrees have led. Macroscopically oriented