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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
181

Real-Time Monitoring of Healthcare Interventions in Routine Care : Effectiveness and Safety of Newly Introduced Medicines

Cars, Thomas January 2016 (has links)
Before market authorization of new medicines, their efficacy and safety are evaluated using randomized controlled trials. While there is no doubt about the scientific value of randomized trials, they are usually conducted in selected populations with questionable generalizability to routine care.  In the digital data revolution era, with healthcare data growing at an unprecedented rate, drug monitoring in routine care is still highly under-utilized. Although many countries have access to data on prescription drugs at the individual level in ambulatory care, such data are often missing for hospitals. This is a growing problem considering the clear trend towards more new and expensive drugs administered in the hospital setting. The aim of this thesis was therefore to develop methods for extracting data on drug use from a hospital-based electronic health record system and further to build and evaluate models for real-time monitoring of effectiveness and safety of new drugs in routine care using data from electronic health records and regional and national health care registers. Using the developed techniques, we were able to demonstrate drug use and health service utilization for inflammatory bowel disease and to evaluate the comparative effectiveness and safety of antiarrhythmic drugs. With a rapidly evolving drug development, it is important to optimize the evaluation of effectiveness, safety and health economic value of new medicines in routine care. We believe that the models described in this thesis could contribute to fulfil this need.
182

Validity and Reliability of a New Measure of Nursing Experience With Unintended Consequences of Electronic Health Records.

Gephart, Sheila M, Bristol, Alycia A, Dye, Judy L, Finley, Brooke A, Carrington, Jane M 10 1900 (has links)
Unintended consequences of electronic health records represent undesired effects on individuals or systems, which may contradict initial goals and impact patient care. The purpose of this study was to determine the extent to which a new quantitative measure called the Carrington-Gephart Unintended Consequences of Electronic Health Record Questionnaire (CG-UCE-Q) was valid and reliable. Then, it was used to describe acute care nurses' experience with unintended consequences of electronic health records and relate them to the professional practice environment. Acceptable content validity was achieved for two rounds of surveys with nursing informatics experts (n = 5). Then, acute care nurses (n = 144) were recruited locally and nationally to complete the survey and describe the frequency with which they encounter unintended consequences in daily work. Principal component analysis with oblique rotation was applied to evaluate construct validity. Correlational analysis with measures of the professional practice environment and workarounds was used to evaluate convergent validity. Test-retest reliability was measured in the local sample (N = 68). Explanation for 63% of the variance across six subscales (patient safety, system design, workload issues, workarounds, technology barriers, and sociotechnical impact) supported construct validity. Relationships were significant between subscales for electronic health record-related threats to patient safety and low autonomy/leadership (P < .01), poor communication about patients (P < .01), and low control over practice (P < .01). The most frequent sources of unintended consequences were increased workload, interruptions that shifted tasks from the computer, altered workflow, and the need to duplicate data entry. Convergent validity of the CG-UCE-Q was moderately supported with both the context and processes of workarounds with strong relationships identified for when nurses perceived a block and altered process to work around it to subscales in the CG-UCE-Q for electronic health record system design (P < .01) and technological barriers (P < .01).
183

An Analysis of the External Environmental and Internal Organizational Factors Associated With Adoption of the Electronic Health Record

Kruse, Clemens 09 May 2013 (has links)
Despite a Presidential Order in 2004 that launched national incentives for the use of health information technology, specifically the Electronic Health Record (EHR), adoption of the EHR has been slow. This study attempts to quantify factors associated with adoption of the EHR and Computerized Provider Order Entry (CPOE) by combining multiple organizational theories and empirical studies. The study is conducted in two phases. The primary phase of this study identifies and evaluates the effects of external environmental and internal organizational factors on healthcare organizations to adopt the EHR. From secondary data, twelve IVs (df=19) are chosen based on existing models and literature. Logistic regression is used to determine the association between the environmental factors and EHR adoption. The secondary phase of this study examines the adoption of five variations of CPOE using the same IVs from phase one. This EHR component of CPOE is chosen due to its promotion as a solution to help cross the quality chasm (IOM, 2001). Secondary data are analyzed and logistic regression is used to quantify the association between the factors of EHR adoption and CPOE adoption. Eleven of the twelve IVs are significant between the two phases (p<.1). This study uses data from 2009 because the HITECH Act was passed that year and significant government incentives were offered for those health care organizations (HCOs) that meet the qualifications of meaningful use. This study serves as a baseline for future studies, extends the work of other empirical studies, and fills a gap in the literature concerning factors associated with the adoption of the EHR and specific dimensions of CPOE. The Kruse Theory developed is strongly based in literature and reflects complexity commensurate with the health care industry.
184

Health information needs for initial assessments of children-in-care

Thompson, Cori Denise 13 April 2017 (has links)
Children and youth in state or statutory care (children-in-care) are at a higher risk of not having their health needs met than the general pediatric population. A literature review found a paucity of evidence on the health information needed for initial assessments of children-in-care in health record information systems in Canada, particularly when compared with information collected in the comparator countries the United States, United Kingdom, and Australia. This qualitative research reviewed six forms currently used in British Columbia (BC) for assessing the health needs of children-in-care, and for planning future health care delivery for these children. The forms were reviewed with social workers, foster parents, and medical care providers to understand how the forms met their needs for health information for initial assessments when a child first enters care. One researcher conducted 31 interviews with 37 participants —a mixture of social workers, foster parents, and medical care providers allowed for source triangulation— in urban and rural communities using a 19-question, nonvalidated interview tool. NVivo-10 was used to inductively encode participant interviews relying on Pava’s 9-step, nonlinear sociotechnical systems approach to identify themes and concepts raised by the interviews. The researcher conducted an informal review of relevant Ministry of Children and Family Development (MCFD) organization documents and method triangulated the results to the interview findings to identify similarities, differences, and gaps. Findings from these two analyses were compared with the literature review findings. The six forms were found to document most of the required information for typical children-in-care provided the forms were available to the care team and completed in full prior to the initial assessment. Additional forms were used for children-in-care with complex health needs. Key health information included parents’ relevant health and social information, prenatal and birth records, medical and social history of the child, immunization record, whether the child had experienced adverse childhood events, and anything that might remind the child of a stressful situation and cause the child an adverse mental or physical outcome. Complexity in acquiring the needed health information comes from a variety of circumstances. For example, the child may transition in and out of care, parents may be unavailable, and social workers, foster parents, and medical care providers may each change while the child is in care. To overcome information-sharing challenges and barriers, research participants recommended several improvements including funding changes to support medical care provider participation, an information-sharing framework, and electronic options such as a centralized child-in-care record with secure email capability. Introducing some practices from other jurisdictions, notably a senior medical advisor role and a medical assessment model, might help address process challenges when health information is missing during the initial medical assessment. These resources would help round out MCFD’s existing conceptual child-in-care health-care framework. Together these changes may support social workers, foster parents, and medical care providers to provide care to and plan for children-in-care. / Graduate / 0723 (Information Science), 0769 (Health Care Management), 0452 (Social Work) / cdthomps@uvic.ca
185

Du système d'information clinique au système d'information épidémiologique : apport de l'intéropérabilité sémantique

Avillach, Paul 27 September 2011 (has links)
Les informations médicales recueillies dans le cadre du soin doivent être utilisables pour répondre à d’autres objectifs plus collectifs. Dans ce contexte de réutilisation des données d’un système d’information clinique pour de la recherche en épidémiologie, l’objectif de ce travail est d’étudier l’apport de l'intéropérabilité sémantique à travers un certain nombre de situations concrêtes que nous avons rencontrées et étudiées et qui illustrent la nature des problèmes de cohérence sémantiques liés au traitement des données médicales et de santé.La coexistence, à un moment donné, de plusieurs référentiels sémantiques ne doit pas être considéré comme un obstacle à l'interopérabilité. Des outils génériques peuvent être conçus et développés pour passer de façon transparente d'un composant à un autre avec aussi peu de perte d’information que possible. L’Unified Medical Language System (UMLS) est un de ses outils d’intégration sémantique. Son usage dans le cadre de ces travaux montre le caractère général de cette méthode et son potentiel pour résoudre cette classe de problèmes d’intéropérabilité sémantique.La richesse de chacune des terminologies permet, lorsqu’elles sont associées dans un même référentiel sémantique pivot, d’enrichir l’ensemble des terminologies prises individuellement pour une meilleur représentation des connaissances.L’interopérabilité sémantique améliore la disponibilité et la qualité des données réutilisables pour des recherches en santé publique. Elle permet d’enrichir les données existantes. Elle fournit les moyens d'accéder à de nouvelles sources de données, agrégées de manière valide, permettant des analyses comparatives ou des analyses plus riches. / Medical information collected during clinical care must be re-used to address other more collective goals. In this context of re-using data from a clinical information system for epidemiological research, the objective of this work is to study the contribution of semantic interoperability across a number of practical situations we have met and discussed which illustrate the nature of semantic consistency problems associated with processing of medical data.Coexistence at a given time, of several semantic repositories should not be considered as an obstacle to interoperability. Generic tools can be designed and developed to move seamlessly from one component to another with as little loss of information as possible. The Unified Medical Language System (UMLS) is one of the semantic integration tools. Its use in this work shows the generality of this method and its potential for solving this class of semantic interoperability problems.The richness of each of the terminology can, when combined into a single pivot semantic repository, enrich the set of terminologies individually for a better representation of knowledge.Semantic interoperability improves the availability and quality of reusable data for public health research. It also enriches existing data. It provides access to new sources of data, aggregated in a valid manner, allowing benchmarking or richer analysis.
186

Generating Evidence for COPD Clinical Guidelines Using EHRs

Amber M Johnson (7023350) 14 August 2019 (has links)
The Global Initiative for Chronic Obstructive Lung Disease (GOLD) guidelinesare used to guide clinical practices for treating Chronic Obstructive Pulmonary Disease (COPD). GOLD focuses heavily on stable COPD patients, limiting its use fornon-stable COPD patients such as those with severe, acute exacerbations of COPD (AECOPD) that require hospitalization. Although AECOPD can be heterogeneous, it can lead to deterioration of health and early death. Electronic health records (EHRs) can be used to analyze patient data for understanding disease progression and generating guideline evidence for AECOPD patients. However, because of its structure and representation, retrieving, analyzing, and properly interpreting EHR data can be challenging, and existing tools do not provide granular analytic capabil-ities for this data.<div><br></div><div>This dissertation presents, develops, and implements a novel approach that systematically captures the effect of interventions during patient medical encounters, and hence may support evidence generation for clinical guidelines in a systematic and principled way. A conceptual framework that structures components, such as data storage, aggregation, extraction, and visualization, to support EHR data analytics for granular analysis is introduced. We develop a software framework in Python based on these components to create longitudinal representations of raw medical data extracted from the Medical Information Mart for Intensive Care (MIMIC-III) clinical database. The software framework consists of two tools: Patient Aggregated Care Events (PACE), a novel tool for constructing and visualizing entire medical histories of both individual patients and patient cohorts, and Mark SIM, a Markov Chain Monte Carlo modeling and simulation tool for predicting clinical outcomes through probabilistic analysis that captures granular temporal aspects of aggregated, clinicaldata.<br></div><div><br></div><div>We assess the efficacy of antibiotic treatment and the optimal time of initiationfor in-hospitalized AECOPD patients as an application to probabilistic modeling. We identify 697 AECOPD patients of which 26.0% were administered antibiotics. Our model simulations show a 50% decrease in mortality rate as the number of patients administered antibiotics increase, and an estimated 5.5% mortality rate when antibiotics are initially administrated after 48 hours vs 1.8% when antibiotics are initially administrated between 24 and 48 hours. Our findings suggest that there may be amortality benefit in initiation of antibiotics early in patients with acute respiratory failure in ICU patients with severe AECOPD.<br></div><div><br></div><div>Thus, we show that it is feasible to enhance representation of EHRs to aggregate patients’ entire medical histories with temporal trends and support complex clinical questions to drive clinical guidelines for COPD.<br></div>
187

Avaliação do impacto da implantação de registro médico eletrônico de pacientes no ambulatório de clínica médica geral do Hospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo / Assessing the impact of implementation of electronic medical record in outpatient clinic medical general Hospital das Clinicas, Faculty of Medicine, University of São Paulo

Duarte, Jurandir Godoy 13 October 2016 (has links)
Objetivo: Avaliar a satisfação e expectativas dos pacientes e médicos antes e depois da implantação de um registro médico eletrônico (RME) de pacientes no ambulatório de clínica médica de um hospital universitário. Métodos: Foram realizadas 389 entrevistas com pacientes e 151 com médicos antes e depois da implantação de um RME comercial no ambulatório de Clínica Médica do Hospital das Clínicas da Universidade de São Paulo, Brasil. Os médicos foram categorizados por seus anos de graduação (10 anos ou menos e mais de 10 anos). As respostas ao questionário dadas pelos médicos foram classificadas como favorável ou contra o uso de RME, antes e depois da implantação do sistema, recebendo 1 ou 0 pontos, respectivamente. A soma destes pontos gerou uma pontuação analisada por regressão múltipla para determinar quais os fatores que contribuem para a aceitação de RME pelos médicos. Para se avaliar o comportamento de pacientes e médicos em um período em que a implantação já havia entrado na rotina, realizou-se uma terceira etapa de entrevistas com pacientes e médicos. Resultados: O grau de satisfação do paciente era o mesmo antes e depois da implantação (p > 0,05). O tempo de espera para ser atendido foi maior após a implantação de RME (p < 0,0001), embora a percepção dos pacientes tenha apontado para uma direção diferente (p=0,0186). Médicos formados há menos de 10 anos já tinham usado os registros eletrônicos em outros hospitais e clínicas (p=0,0141). Estes médicos tinham expectativas mais positivas antes da implantação (p=0,0018). Este otimismo foi reduzido após a implantação, devido ao mau funcionamento do sistema durante a fase inicial (p=0,0229). A utilização do RME foi maior pelos médicos mais jovens (p < 0,0001). Na terceira avaliação os pacientes mostraram-se muito satisfeitos com o atendimento (porcentagem de mais de 90%). Percebiam a utilização do computador durante a consulta e valorizavam essa utilização. Os médicos com 10 anos ou menos de graduação, percebiam e valorizavam mais as facilidades do registro eletrônico e o utilizavam mais. Em 11 de 18 questões específicas sobre o desempenho de tarefas clínicas os médicos mais jovens julgaram mais fácil utilizar o RME, do que os médicos mais antigos p < 0,05. Questionados especificamente sobre a satisfação com o RME, os médicos mais jovens responderam \"boa\" e \"excelente\" em maior proporção do que os com mais de 10 anos de formados (p=0,0011) / Objective: To evaluate the satisfaction and expectations of patients and physicians before and after the implementation of an electronic medical record (EMR) in internal medicine outpatient clinic of a university hospital. Methods: We conducted 389 interviews with patients and 151 with doctors before and after the implementation of a commercial RME in internal medicine outpatient clinic of the Hospital das Clinicas, University of São Paulo, Brazil. Doctors were categorized by their graduate years (10 years or less and more than 10 years). The answers to the questionnaire given by doctors were classified as favorable or against the use of EMR, before and after the implementation of the system, receiving 1 or 0 points, respectively. The sum of the points generated scores analyzed by multiple regression to determine the factors that contribute to the acceptance of EMR by doctors. To evaluate the behavior of patients and doctors in a period when the implementation had already entered the routine, a third stage of interviews with patients and doctors was carried out. Results: The degree of patient satisfaction was the same before and after implantation (p > 0.05). The waiting time to be attended was increased after the implementation of EMR (p < 0.0001), although the perception of patients has pointed to a different direction (p=0.0186). Doctors graduated less than 10 years had already used the electronic records in other hospitals and clinics (p=0.0141). These doctors had more positive expectations before implantation (p=0.0018). This optimism was reduced after implantation, due to system malfunction during the initial phase (p=0.0229). Utilization of EMR was higher by younger physicians (p < 0.0001). The third evaluation showed the patients were very satisfied with the service (over 90%). They noticed the use of the computer during the consultation and valued such use. Doctors with 10 or less graduation years, perceived and valued more the facilities of electronic medical records and used more. In 11 of 18 specific questions about the performance of clinical tasks younger doctors deemed it easier to use the electronic medical record, than older physicians (p < 0.05). When asked specifically about satisfaction with EMR, younger physicians responded \"good\" and \"excellent\" in greater proportion than the old physicians (p=0.0011)
188

Avaliação de um sistema de registro de dados de tuberculose: proposta de integração de ações e serviços / Evaluation of a system for recording data of tuberculosis: proposed integration of services and actions

Orfão, Nathalia Halax 08 January 2016 (has links)
Este estudo buscou analisar os instrumentos e sistemas de registro de tratamento da tuberculose (TB) em relação à coordenação da assistência prestada aos doentes de TB antes e após da implantação do Sistema Informatizado para Registro da Assistência à TB (SISTB) em um Programa de Controle da Tuberculose (PCT) no município de Ribeirão Preto - SP. Estudo epidemiológico descritivo-analítico, do tipo intervenção. Foram utilizados os instrumentos de registro de acompanhamento da TB (Prontuários Clínicos, Fichas de Registro do Tratamento Diretamente Observado (TDO), Livro de Registro e Acompanhamento dos Casos de TB, TBWEB e SISTB) por meio de um formulário estruturado, com base no Manual de Recomendações para o Controle da TB, bem como do levantamento das variáveis não obrigatórias do TBWEB. A coleta de dados ocorreu no período de março a junho de 2014, considerando o período antes da implantação do SISTB e no mês de abril de 2015, período após a implantação do mesmo. Os dados coletados foram analisados através de distribuição de frequência e teste Qui-quadrado ou Exato de Fisher com nível de significância de 5%, após aprovação do comitê de ética (CAAE 15671713.9.1001.5393). Foi possível observar que houve associação entre os instrumentos de registros e o período anterior da implantação do SISTB com o arquivamento no prontuário, e o posterior com o contato telefônico e endereço do doente de TB (Ficha de Registro do TDO e SISTB); bem como aumento do registro da data de término do tratamento, da situação de encerramento, do resultado do exame de baciloscopia de escarro para controle mensal e teste anti-HIV (Livro de Registro e Acompanhamento de Tratamento dos Casos de Tuberculose); e maior registro de consultas mensais com o médico, atendimento com assistente social, solicitação de exames realizados pelo médico, condições de vida do doente de TB, controle de comunicantes, incentivos sociais oferecidos e uso de álcool e drogas (Prontuário Clínico). Além disso, houve aumento no registro da data dos primeiros sintomas, exame de raio-x e comunicantes; e diminuição do registro sobre a baciloscopia de controle mensal do 1o mês de tratamento (TBWEB). Verificou-se melhora no registro de algumas variáveis após a implantação do SISTB, embora o registro sobre as atividades de vigilância epidemiológica, como o controle de comunicantes, ainda permanecem marginais e o foco da atenção esteja voltado para os doentes de TB e centralizado no atendimento individual / This study analized the instruments and tuberculosis (TB) treatment record systems in relation to the coordination of assistance to TB patients before and after the implementation of the Information System for Registration Assistance to TB (SISTB) in a Tuberculosis Control Program in Ribeirao Preto - SP. Descriptive and analytical epidemiological study, intervention type. It was utilized the instruments of record for monitoring of TB (Medical Records, Directly Observed Treatment (DOT) Registration, Record and Treatment Monitoring of TB Cases Book, TBWEB and SISTB) through a structured form, according to National Recommendations for the TB Control, as well as the lifting of non-compulsory variables\' TBWEB. Data collection occurred from March to June 2014, considering the period prior to implementation of SISTB and in April 2015, the period after the implementation of the same. The collected data were analyzed through frequency distribution and chi-square test or Fisher\'s exact with 5% significance level, after approval by the Ethics Committee (CAAE 15671713.9.1001.5393). It was observed that there was an association between the instruments of records and the period of SISTB deployment with filing in the medical record, and later with the phone contact and TB patient address (DOT Registration and SISTB); as well as higher record date of completion of treatment, the close situation, the result of the examination of sputum smears for monthly control and HIV testing (Record and Treatment Monitoring of TB Cases Book); and largest registry of monthly visits to the doctor, assistance with social worker, test requests made by the doctor, living conditions of the TB patient, communicating control, social incentives and use of alcohol and drugs (Medical Record). In addition, there was an improvement on the record date of the first symptoms, examining x-ray and communicating; and worsening record on the smear monthly control of the first month of treatment (TBWEB). An improvement in the registration of some variables after the implementation of SISTB, although the epidemiological surveillance activities, such as communicating control, are still marginal and the focus of attention is facing TB patients and centered on individual care
189

Método de extração  de coortes em bases de dados assistenciais para estudos da doença cardiovascular / A method for the cohort selection of cardiovascular disease records from an electronic health record system

Abrahão, Maria Tereza Fernandes 10 May 2016 (has links)
A informação coletada de prontuários manuais ou eletrônicos, quando usada para propósitos não diretamente relacionados ao atendimento do paciente, é chamado de uso secundário de dados. A adoção de um sistema de registro eletrônico em saúde (RES) pode facilitar a coleta de dados para uso secundário em pesquisa, aproveitando as melhorias na estruturação e recuperação da informação do paciente, recursos não disponíveis nos tradicionais prontuários em papel. Estudos observacionais baseados no uso secundário de dados têm o potencial de prover evidências para a construção de políticas em saúde. No entanto, a pesquisa através desses dados apresenta problemas característicos a essa fonte de dados. Ao longo do tempo, os sistemas e seus métodos de armazenar dados se tornam obsoletos ou são reestruturados, existem questões de privacidade para o compartilhamento dos dados dos indivíduos e questões relacionadas ao uso desses dados em um contexto diferente do seu propósito original. É necessária uma abordagem sistemática para contornar esses problemas, onde o processamento dos dados é efetuado antes do seu compartilhamento. O objetivo desta Tese é propor um método de extração de coortes de pacientes para estudos observacionais contemplando quatro etapas: (1) mapeamento: a reorganização de dados a partir de um esquema lógico existente em um esquema externo comum sobre o qual é aplicado o método; (2) limpeza: preparação dos dados, levantamento do perfil da base de dados e cálculo dos indicadores de qualidade; (3) seleção da coorte: aplicação dos parâmetros do estudo para seleção de dados longitudinais dos pacientes para a formação da coorte; (4) transformação: derivação de variáveis de estudo que não estão presentes nos dados originais e transformação dos dados longitudinais em dados anonimizados prontos para análise estatística e compartilhamento. O mapeamento é uma etapa específica para cada RES e não é objeto desse trabalho, mas foi realizada para a aplicação do método. As etapas de limpeza, seleção de coorte e transformação são comuns para qualquer RES. A utilização de um esquema externo possibilita o uso parâmetros que facilitam a extração de diferentes coortes para diferentes estudos sem a necessidade de alterações nos algoritmos e garante que a extração seja efetuada sem perda de informações por um processo idempotente. A geração de indicadores e a análise estatística fazem parte do processo e permitem descrever o perfil e qualidade da base de dados e os resultados do estudo. Os algoritmos computacionais e os dados são disponibilizados em um repositório versionado e podem ser usados a qualquer momento para reproduzir os resultados, permitindo a verificação, alterações e correções de erros. Este método foi aplicado no RES utilizado no Instituto do Coração - HC FMUSP, considerando uma base de dados de 1.116.848 pacientes cadastrados no período de 1999 até 2013, resultando em 312.469 registros de pacientes após o processo de limpeza. Para efetuar uma análise da doença cardiovascular em relação ao uso de estatinas na prevenção secundária de eventos evolutivos, foi constituída uma coorte de 27.915 pacientes, segundo os seguintes critérios: período de 2003 a 2013, pacientes do gênero masculino e feminino, maiores de 18 anos, com um diagnóstico no padrão CID-10 (códigos I20 a I25, I64 a I70 e G45) e com registro de no mínimo duas consultas ambulatoriais. Como resultados, cerca de 80% dos pacientes tiveram registro de estatinas, sendo que, 30% tiveram registro de estatinas por mais de 5 anos, 42% não tiveram registro de nenhum evento evolutivo e 9,7% tiveram registro de dois ou mais eventos. O tempo médio de sobrevida calculado pelo método Kaplan-Meier foi de 115 meses (intervalo de confiança 95% 114-116) e os pacientes sem registro de estatinas apresentaram uma maior probabilidade de óbito pelo teste log-rank p < 0,001. Conclui-se que a adoção de métodos sistematizados para a extração de coortes de pacientes a partir do RES pode ser uma abordagem viável para a condução de estudos epidemiológicos / Information collected from manual or electronic health records can also be used for purposes not directly related to patient care delivery, in which case it is termed secondary use. The adoption of electronic health record (EHR) systems can facilitate the collection of this secondary use data, which can be used for research purposes such as observational studies. These studies have the power to provide necessary evidence for the formation of healthcare policies. However, several problems arise when conducting research using this kind of data. For example, over time, systems and their methods of storing data become obsolete, data concerns arise since the data is being used in a different context to where it originated and privacy concerns arise when sharing data about individual subjects. To overcome these problems a systematic approach is required where local data processing is performed prior to data sharing. The objective of this thesis is to propose a method to extract patient cohorts for observational studies in four steps: (1) data mapping from an existing local logical schema into a common external schema over which information can be extracted; (2) cleaning of data, generation of the database profile and retrieval of indicators; (3) computation of derived variables from original variables; (4) application of study design parameters to transform longitudinal data into anonymized data sets ready for statistical analysis and sharing. Mapping is a specific stage for each EHR and although it is not the focus of this work, a detail of the mapping is included. The stages of cleaning, selection of cohort and transformation are common to all EHRs and form the main objective. The use of an external schema allows the use of parameters that facilitate the extraction of different cohorts for different studies without the need for changes to the extraction algorithms. This ensures that, given an immutable dataset, the extraction can be done by the idempotent process. The generation of indicators and statistical analysis form part of the process and allow profiling and qualitative description of the database. The set extraction / statistical processing is available in a version controlled repository and can be used at any time to reproduce results, allowing the verification of alterations and error corrections. The method was applied to EHR from the Heart Institute - HC FMUSP, with a dataset containing 1,116,848 patients\' records from 1999 up to 2013, resulting in 312,469 patients records after the cleaning process. An analysis of cardiovascular disease in relation to statin use in the prevention of secondary events was defined using a cohort selection of 27,915 patients with the following criteria: study period: 2003-2013, gender: Male, Female, age: >= 18 years old, at least 2 outpatient visits, diagnosis of CVD (ICD-10 codes: I20-I25, I64-I70 and G45). Results showed that around 80% of patients had a prescription for statins, of which 30% had a prescription for statins for more than 5 years. 42% had no record of a future event and 9,7% had two or more future events. Survival time was measured using a univariate Kaplan-Meier method resulting in 115 months (CI 95% 114-116) and patients without statin prescription showed a higher probability of death when measured by log-rank (p < 0.001) tests. The conclusion is that the adoption of systematised methods for cohort extraction of patients from EHRs can be a viable approach for conducting epidemiological studies
190

Persistência de dados clínicos baseada nas definições ADL de arquétipos do OpenEHR / Clinical data persistence based on OpenEHR archetypes ADL definitions

Silva, Áurea Valéria Pereira da 14 December 2016 (has links)
Submitted by Luciana Ferreira (lucgeral@gmail.com) on 2017-01-16T10:13:02Z No. of bitstreams: 2 Dissertação - Áurea Valéria Pereira da Silva - 2016.pdf: 2576793 bytes, checksum: 3b3472812df3319818244bcd2e0482d7 (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5) / Approved for entry into archive by Luciana Ferreira (lucgeral@gmail.com) on 2017-01-16T10:13:30Z (GMT) No. of bitstreams: 2 Dissertação - Áurea Valéria Pereira da Silva - 2016.pdf: 2576793 bytes, checksum: 3b3472812df3319818244bcd2e0482d7 (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5) / Made available in DSpace on 2017-01-16T10:13:30Z (GMT). No. of bitstreams: 2 Dissertação - Áurea Valéria Pereira da Silva - 2016.pdf: 2576793 bytes, checksum: 3b3472812df3319818244bcd2e0482d7 (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5) Previous issue date: 2016-12-14 / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPES / Introduction: OpenEHR is a standardization of Health Information Systems (HIS) that is mainly concerned with the exchange of Electronic Health Records (EHR). One of the major obstacles to the adoption of openEHR is the lack of database persistence specifications. Objective: The aim of this work is the mapping of storage structures from the Archetype Definition Language (ADL) specifications which describe clinical knowledge structure. Method: This research initially makes a systematic mapping about persistence structures that are derived directly from ADL specifications, i.e. without dependences from the Reference Model (RM) of openEHR. A new persistence strategy is proposed and compared with ones found in the literature. Results: Assumptions, criteria and rules were used to present the proposed approach. Its evaluation considered quantitative aspects of persistence structures. Conclusion: The evaluation revealed some advantages of proposed approach, such as: reductions of reference attributes (referential integrity) and redundancy in clinical database; production of unidentified clinical records in relation to the patient; creation of a single base table for each archetype, regardless of its use in the form of slots; scalability of database schema (stable number of database tables), even in the occurrence of recursion through slots. / Introdução: OpenEHR é uma padronização dos Sistemas de Informação em Saúde (SIS) que se preocupa principalmente com a troca de Registros de Saúde Eletrônicos (RES). Um dos maiores obstáculos à adoção do openEHR é a carência de especificações de persistência de banco de dados. Objetivo: O objetivo deste trabalho é o mapeamento de estruturas de armazenamento a partir das especificações Archetype Definition Language (ADL) que descrevem a estrutura do conhecimento clínico. Métodos: Esta pesquisa inicialmente faz um mapeamento sistemático sobre estruturas de persistência que são derivadas diretamente de especificações ADL, isto é, sem dependências do Modelo de Referência (RM) de openEHR. Uma nova estratégia de persistência é proposta e comparada com as encontradas na literatura. Resultados: Foram utilizados pressupostos, critérios e regras para apresentar a abordagem proposta. Uma avaliação considerou aspectos quantitativos das estruturas de persistência, em comparação com o que foi encontrado na literatura. Conclusões: A avaliação revelou algumas vantagens da abordagem proposta, tais como: reduções de atributos de referência (integridade referencial) e redundância em banco de dados clínicos; produção de registros clínicos não identificados em relação ao paciente; criação de uma tabela de base única para cada arquétipo, independentemente da sua utilização sob a forma de slots; escalabilidade do esquema de banco de dados (número estável de tabelas de banco de dados), mesmo na ocorrência de recursão através de slots.

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