• Refine Query
  • Source
  • Publication year
  • to
  • Language
  • 101
  • 44
  • 21
  • 12
  • 8
  • 7
  • 7
  • 7
  • 7
  • 7
  • 7
  • 3
  • Tagged with
  • 231
  • 47
  • 44
  • 32
  • 26
  • 25
  • 22
  • 22
  • 21
  • 18
  • 18
  • 16
  • 15
  • 14
  • 14
  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
201

Synthèse par cycloaddition 1,3-dipolaire d’hétérocycles et spiro-hétérocycles glycosylés comme inhibiteurs de la glycogène phosphorylase et agents anti-hyperglycémiants : évaluation et tests biologiques / 1,3-Dipolar cycloaddition synthesis of glycosylated heterocycles and spiro-heterocycles as glycogen phosphorylase inhibitors : biological testing and evaluation

Goyard, David 15 December 2011 (has links)
A la suite des nombreux travaux sur l’inhibition de la glycogène phosphorylase (GP) menés au laboratoire et au travers de diverses collaborations, cette thèse décrit en cinq chapitres suivis d’une partie expérimentale détaillée, les dernières avancées en termes de synthèse et d’évaluation biologique des inhibiteurs du site catalytique de la GP. La chapitre I de ce manuscrit est consacrée à la présentation des diabètes et plus particulièrement du diabète de type II dont le traitement, motivation première de ce projet, repose sur la connaissance des mécanismes complexes régulant la glycémie. Les différents inhibiteurs synthétisés sont classés par famille selon leur structure qui associe un aglycone hétérocyclique, susceptible d’affinité pour le canal β proche du site actif de l’enzyme, avec un motif glycopyranosidique, ou glycopyranosylidène dans le cas des motifs spiro. Le chapitre II est consacré aux inhibiteurs spiro-bicycliques tels que les glucopyranosylidène-spiro-1,4,2-oxathiazoles et les glucopyranosylidène-spiro-isoxazolines. Le chapitre III décrit la synthèse de C- et N-glycosyles hétérocycles, principalement des glycopyranosyl-1,2,3-triazoles. Enfin le chapitre IV décrit la fonctionnalisation de 5-halogéno-1,2,3-triazoles 4-substitués par couplages pallado-catalysés qui ont constitué un développement imprévu mais original des travaux. Pour terminer, le chapitre V décrit l’évaluation des molécules préparées en tant qu’inhibiteurs de la glycogène phosphorylase. Les expériences et résultats d’enzymologie, de cristallographie ainsi que les tests cellulaires in vitro et in vivo sur le rat sont présentés / Following many studies lead on the inhibition of glycogen phosphorylase (GP) in our laboratory an trough several collaborations, this thesis describes in five chapters and a detailed experimental section, the most recent advances in the areas of synthesis and biological evaluation of GP’s catalytic site inhibitors. Chapter I is dedicated to the description of diabetes and especially type 2 diabetes of which treatment, the main goal of this project, requires knowledge of the complex mechanisms that regulates glycemia. Synthesized inhibitors are broken down into families according to their structure which associates an heterocyclic aglycon, prone to binding in the β pocket lining the active site, with a glycopyranoside or glycopyranosylidene moiety in the case of spiro compounds. Chapter II focuses on spiro-bicyclic inhibitors such as glucopyranosilidene-spiro-1,4,2-oxathiazoles and glucopranosylidene-spiro-isoxazolines. Chapter III describes the synthesis of C- and N-glycosyl-heterocycles, mainly glycopyranosyl-1,2,3-triazoles. Finally, chapter IV studies the palladium-mediated cross coupling fonctionalization of 4-substituted-5-halogenated-1,2,3-triazoles that represents an unexpected but interesting development of the project. To conclude, chapter V gathers the evaluation of synthesized molecules as GP inhibitors. Enzymology and crystallography as well as in vitro and in vivo experiments are presented
202

D-Aminoacylases and Dipeptidases within the Amidohydrolase Superfamily: Relationship Between Enzyme Structure and Substrate Specificity

Cummings, Jennifer Ann 2010 December 1900 (has links)
Approximately one third of the genes for the completely sequenced bacterial genomes have an unknown, uncertain, or incorrect functional annotation. Approximately 11,000 putative proteins identified from the fully-sequenced microbial genomes are members of the catalytically diverse Amidohydrolase Superfamily. Members of the Amidohydrolase Superfamily separate into 24 Clusters of Orthologous Groups (cogs). Cog3653 includes proteins annotated as N-acyl-D-amino acid deacetylases (DAAs), and proteins within cog2355 are homologues to the human renal dipeptidase. The substrate profiles of three DAAs (Bb3285, Gox1177 and Sco4986) and six microbial dipeptidase (Sco3058, Gox2272, Cc2746, LmoDP, Rsp0802 and Bh2271) were examined with N-acyl-L-, N-acyl-D-, L-Xaa-L-Xaa, L-Xaa-D-Xaa and D-Xaa-L-Xaa substrate libraries. The rates of hydrolysis of the library components were determined by separating the amino acids by HPLC and quantitating the products. Gox1177 and Sco4986 hydrolyzed several N-acyl-D-amino acids, especially those where the amino acid was a hydrophobic residue. Gox1177 hydrolyzed L-Xaa-D-Xaa and N-acetyl-D-amino acids with similar catalytic efficiencies (~10⁴ M⁻¹s⁻¹). The best substrates identified for Gox1177 and Sco4986 were N-acetyl-D-Trp and N-acetyl-D-Phe, respectively. Conversely, Bb3285 hydrolyzed N-acyl-D-Glu substrates (kcat/Km ⁹́⁸ 5 x 10⁶M⁻¹s⁻¹) and, to a lesser extent, L-Xaa-D-Glu dipeptides. The structure of a DAA from A. faecalis did not help explain the substrate specificity of Bb3285. N-methylphosphonate derivatives of D-amino acids were inhibitors of the DAAs examined. The structure of Bb3285 was solved in complex with the N-methylphosphonate derivative of D-Glu or acetate/formate. The specificity of Bb3285 was due to an arginine located on a loop which varied in conformation from the A. faecalis enzyme. In a similar manner, six microbial renal dipeptidase-like proteins were screened with 55 dipeptide libraries. These enzymes hydrolyzed many dipeptides but favored L-D dipeptides. Respectable substrates were identified for proteins Bh2271 (L-Leu-D-Ala, kcat/Km = 7.4 x 10⁴ M⁻¹s⁻¹), Sco3058 (L-Arg-D-Asp, kcat/Km = 7.6 x 10⁵ M⁻¹s⁻¹), Gox2272 (L-Asn-D-Glu, kcat/Km = 4.7 x 10⁵ M⁻¹s⁻¹), Cc2746 (L-Met-D-Leu, kcat/Km = 4.6 x 10⁵ M⁻¹s⁻¹), LmoDP (L-Leu-D-Ala, kcat/Km = 1.1 x 10⁵ M⁻¹s⁻¹), Rsp0802 (L-Met-D-Leu, kcat/Km = 1.1 x 10⁵ M⁻¹s⁻¹). Phosphinate mimics of dipeptides were inhibitors of the dipeptidases. The structures of Sco3058, LmoDP and Rsp0802 were solved in complex with the pseudodipeptide mimics of L-Ala-D-Asp, L-Leu-D-Ala and L-Ala-D-Ala, respectively. The structures were used to assist in the identification of the structural determinants of substrate specificity.
203

Investigation of the Catalytic Mechanism and Biosensing Potential of Phosphotriesterases

Langley, Christopher R. 25 August 2011 (has links)
This thesis describes the characterization of SsoPox, a lactonase with promiscuous phosphotriesterase activity from the hyperthermophilic archaeon, Sulfolobus solfataricus, and the potential of the phosphotriesterase from Brevundimonas diminuta (PTEBd) to function as an organophosphate sensor. Arg-223 and Tyr-99 of SsoPox are not essential for lactonase activity, however substitution of a phenylalanine in place of Tyr-97 abolished lactonase activity while reducing paraoxonase activity by 20-fold. Substrate specificity of SsoPox can be modulated through the partial blockage of the hydrophobic binding tunnel adjacent to the active site. The specificity constant for N-(3-oxo-decanoyl)-L-homoserine lactone decreased 37-fold when a phenylalanine was introduced in place of Leu-226. PTEBd was expressed and purified from Pseudomonas putida and, like SsoPox, can be immobilized to Disruptor paper. The immobilized enzyme can be used to detect five organophosphates at concentrations as low as 50 μM. Incubation of PTEBd-immobilized sensors at different temperatures proved that the enzyme is stable for at least 40 days at 23.5 degrees Celsius without any detectable change in activity.
204

Parâmetros toxicológicos em piavas (Leporinus obtusidens) e jundiás (Rhamdia quelen) após exposição a uma formulação comercial de glyphosate / Toxicological parameters in piava (Leporinus obtusidens) and jundiá (Rhamdia quelen) after exposure to commercial formulation of glyphosate

Glusczak, Lissandra 15 February 2008 (has links)
Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / The commercial formulations of glyphosate herbicide have been widely used in agriculture and pisciculture for controlling plant weeds. Fish can be affected when drainage water reaches water courses, causing a disturbance in the aquatic ecosystem. Therefore, the aim of this study was to investigate whether exposure to a commercial formulation of glyphosate affects toxicological parameters in piavas (Leporinus obtusidens) and jundiás (Rhamdia quelen). Piavas were exposed to: 0 (control), 3, 6, 10 or 20 mg/L of glyphosate (480 g/L) and jundiás to 0 (control), 0.2 or 0.4 mg/L, both for 96 h. Enzymatic (AChE), hematological (hematocrit, hemoglobin and erythrocyte and leucocyte count) and metabolic (glucose, glycogen, lactate, protein and ammonia) parameters were analyzed in different tissues of these species. In addition, oxidative stress parameters, such as activity of the antioxidant enzyme catalase, protein carbonilation and TBARS levels were analyzed. The results showed that brain acetylcholinesterase (AChE) activity decreased significantly in both species exposed, but there was no significant change in the muscle tissue. There was a decrease in hematological parameters in blood of piavas. After exposure to this herbicide, both species demonstrated metabolic disorders. In piavas, there was a reduction of glycogen and an increase of glucose in hepatic tissue, and a reduction of muscle glycogen and glucose. Lactate and protein showed a decrease in hepatic tissue after exposure to all concentrations of the herbicide, but in muscle tissue there was an increase in these metabolites. The levels of ammonia increased in both tissues after exposure, varying with the glyphosate concentration. In jundiás, there was an increase of hepatic glycogen, but a reduction of muscle glycogen at both concentrations tested. Glucose showed a decrease in liver and increase in muscle. After exposure to this herbicide, the levels of lactate were increased in both tissues. The levels of protein were increased in hepatic tissue and decreased in muscle tissue, while the levels of ammonia showed an increase at both herbicide concentrations in both tissues tested. Catalase activity showed an increase in jundiás, but not in piavas. TBARS levels showed an elevation in muscle tissue in jundiás while in piavas there was an increase in hepatic tissue. An increase in protein carbonyl formation in liver of jundiás was observed. In addition, there was an increase in mucus parameters in piavas. These results indicate that the parameters measured may be good indicators of herbicide contamination in piavas and jundiás of the southern region of Brazil. / As formulações comerciais do herbicida glyphosate têm sido amplamente utilizadas na agricultura e na piscicultura para controle de plantas daninhas. Os peixes podem ser afetados quando as águas de drenagem atingem os cursos d água, acarretando um desequilíbrio no ecossistema aquático. Sendo assim, o objetivo deste estudo foi avaliar o efeito de uma formulação comercial de glyphosate sobre parâmetros toxicológicos em piavas (Leporinus obtusidens) e jundiás (Rhamdia quelen). Piavas foram expostas à: 0 (controle), 3, 6, 10 ou 20 mg/L de glyphosate (480 g/L) e os jundiás à 0 (controle), 0,2 ou 0,4 mg/L , ambos por 96 h. Os parâmetros analisados foram enzimáticos (AChE), hematológicos (hematócrito, hemoglobina, contagem de eritrócitos e de leucócitos) e metabólicos (glicose, glicogênio, lactato, proteína e amônia) em diferentes tecidos destas espécies. Ademais, analisaram-se parâmetros de estresse oxidativo, como a atividade da enzima antioxidante catalase, carbonilação de proteínas e níveis de TBARS. Os resultados mostraram que a atividade da acetilcolinesterase (AChE) cerebral diminuiu significativamente em ambas as espécies expostas, porém no tecido muscular não se observaram alterações significativas. Houve um decréscimo nos parâmetros hematológicos no sangue de piavas expostas. Após exposição ao glyphosate, as duas espécies demonstraram desordens metabólicas. Em piavas, ocorreu uma redução nos níveis de glicogênio e um aumento nos níveis de glicose no tecido hepático, porém uma significante redução do glicogênio e glicose muscular. As concentrações de lactato e proteína apresentaram uma diminuição no tecido hepático após exposição a todas as concentrações deste herbicida, porém no tecido muscular houve um aumento destes metabólitos. Os níveis de amônia aumentaram em ambos tecidos após exposição às diferentes concentrações do glyphosate. Em jundiás, a glicose esteve reduzida no fígado e aumentada no músculo. Houve um aumento do glicogênio hepático, mas uma redução do glicogênio muscular em ambas as concentrações testadas. Após exposição a este herbicida, os níveis de lactato estavam aumentados em ambos tecidos. Os níveis de proteína estavam aumentados no tecido hepático e diminuídos no tecido muscular, enquanto os níveis de amônia estavam aumentados em ambas as concentrações e tecidos testados. A atividade da enzima antioxidante catalase apresentou um aumento em jundiás expostos, porém em piavas não houve alterações. Os níveis de TBARS em jundiás mostraram uma elevação no tecido muscular enquanto em piavas houve um aumento no tecido hepático. Observou-se um aumento na formação de proteína carbonila em fígado de jundiás. Além disso, houve aumento nos parâmetros do muco (glicose e proteína) em piavas expostas. Estes resultados indicam que os parâmetros medidos podem ser bons indicadores da contaminação deste herbicida em piavas e jundiás da região Sul.
205

Tandemová hmotnostní spektrometrie sfingolipidů s aplikací pro metabolické studie a diagnostiku sfingolipidos / Tandemová hmotnostní spektrometrie sfingolipidů s aplikací pro metabolické studie a diagnostiku sfingolipidos

Kuchař, Ladislav January 2013 (has links)
In recent years, mass spectrometry (MS) become the dominant technology in lipidomic analysis and widely influenced research and diagnosis of diseases of lipid metabolism, e.g. lysosomal storage disorders (LSD) characterized by impairment of the lysosomal functions. Defects in lysosomal processing of sphingolipids SFL belong to the category of sphingolipidoses. This condition has severe and even fatal clinical outcome. The primary aim of this work was to establish quantitative and qualitative methods of SFL analysis useful for research and diagnosis of LSD. At first, semisynthesis of mass labeled lipid standards utilizing immobilized sphingolipid ceramide N-deacylase was performed. Established methods of quantitative analysis were then used to prove the increased excretion of urinary SFL in LSD with characteristic storage in the kidney. Determination of excreted urinary SFL was found useful for differential diagnosis of prosaposin and saposin B deficiences for which routine enzymology is failing. MS also enabled monitoring of individual molecular species (isoforms) of SFL, which led to the finding that their urinary pattern is changing in some LSD. This resulted in the development of new screening method in dry urinary samples based on isoform profile evaluation. Another MS application referred to...
206

Bases moleculares do efeito do pH na atividas catalítica de duas lisozimas digestivas de Musca domestica (Diptera) / Molecular basis of the pH effect on the catalytic activity of two digestive lysozymes from Musca domestica (Diptera)

Fabiane Chaves Cançado 16 December 2008 (has links)
Lisozimas são enzimas que fazem parte do mecanismo de defesa contra bactérias, no entanto lisozimas com função digestiva também são encontradas no trato digestivo de vertebrados e no intestino médio de insetos. As lisozimas digestivas de insetos são do tipo c e assim compartilham semelhanças estruturais e mecanísticas com a lisozima da clara de ovo de galinha (HEWL). Entretanto, para desempenhar sua função digestiva, as lisozimas de insetos apresentam algumas propriedades particulares entre as quais se destaca um pH ótimo mais ácido em relação às lisozimas não-digestivas. Para elucidar as bases moleculares dessa diferença no pH ótimo, duas lisozimas digestivas (lisozima 1 AAQ20048 e lisozima 2 AAQ20047) da larva de Musca domestica (mosca Diptera Cyclorrhapha), clonadas em Pichia pastoris e purificadas, foram caracterizadas estruturalmente e cineticamente com o substrato sintético (MUQ3) e natural (cápsulas de Micrococcus lysodeikticus). Foi observado que o efeito do pH na atividade das lisozimas 1 e 2 sobre o MUQ3 é uma curva com formato de sino e pH ótimo mais ácido que o da HEWL. Essas curvas foram reflexos da diminuição simultânea dos valores de pKas do nucleófilo e do doador de prótons. Estruturas cristalográficas das lisozimas digestivas de Musca domestica foram obtidas a 1,9 Å e análise comparativa com a estrutura terciária da HEWL revelou resíduos de aminoácidos no ambiente do nucleófilo (N46) e do doador de prótons (S106 e T107) que podem estar envolvidos na modulação das constantes de ionização dos resíduos essenciais à catálise. Esses resíduos foram substituídos via mutagênese sítio-dirigida por D, V e A respectivamente e três mutantes simples (N46D, S106V e T107A) e um triplo (N46DS106V- T107A) foram produzidos e purificados. Caracterização revelou que as contribuições individuais da N46, S106 e T107 foram pequenas e próximas do limite de detecção da técnica utilizada. Por outro lado, o conjunto dos 3 aminoácidos foi responsável pelo pH ótimo ácido frente ao substrato sintético, elevando os valores de pKas do nucleófilo e doador de prótons para valores muito semelhantes ao da HEWL. Diferentemente, essa tripla mutação não foi suficiente para elevar o pH ótimo da lisozima 2 sobre cápsulas de Micrococcus lysodeikticus para valores próximos àqueles de HEWL, sugerindo que as bases moleculares do pH ótimo frente ao substrato natural e sintético são diferentes. Uma comparação estrutural entre lisozima 1 e HEWL sugere que os resíduos de aminoácidos carregados na superfície dessas lisozimas sejam importantes para determinação do pH ótimo. A investigação dessa hipótese foi feita substituindo 5 aminoácidos neutros e 1 ácido, via mutagênese sítio-dirigida, por resíduos básicos. A caracterização do mutante sêxtuplo revelou um aumento significativo nos valores de pH ótimo da lisozima 1, indicando que a redução da basicidade da superfície das lisozimas digestivas é determinante para seus pHs ótimos ácidos. / Lysozymes are enzymes that are part of the defence mechanism against bacteria, however lysozymes with digestive function are also found in the digestive tract of vertebrates and in the insect midgut. The digestive lysozymes from insects are c type, so they share similar structural and mechanistic characteristics with hen egg-white lysozyme (HEWL). However, to perform their digestive function, insect lysozymes present some particular properties among them a more acidic pH optimum than that of non-digestive lysozymes. To elucidate the molecular basis of this pH optimum difference, two digestive lysozymes (lysozyme 1 AAQ20048 and lysozyme 2 AAQ20047) from Musca domestica larvae (housefly Diptera Cyclorrhapha), cloned in Pichia pastoris and purified, were structurally and kinecticly characterized with synthetic (MUQ3) and natural (lyophilized cells of Micrococcus lysodeikticus) substrates. It was observed that the pH effect on the activity of lysozymes 1 and 2 upon MUQ3 is a bell shaped curve exhibiting a more acidic pH optimum than that of HEWL. These curves result from simultaneous decrease of pKas values of the nucleophile and proton donor. Crystallographic structures of these digestive lysozymes from Musca domestica were obtained at 1.9 Å and comparative analysis with the terciary structure of HEWL revealed amino acid residues in the catalytic nucleophile (N46) and proton donor environment (S106 and T107) that may be involved in the modulation of ionization constants of those catalytic residues. N46, S106, and T107 were replaced via site-directed mutagenesis by D, V and A respectively and three simple (N46D, S106V and T107A) and one triple (N46D-S106V-T107A) mutants were produced and purified. Their characterization revealed that the individual contributions of N46, S106 and T107 were small and close to the detection borderline of the technique utilized. On the other hand, a set of these 3 amino acids was responsible by acidic pH optimum upon synthetic substrate, increasing the pKas values of nucleophile and proton donor to similar values to that of the HEWL. Differently, this triple mutation was not enough to increase the pH optimum of lysozyme 2 upon lyophilized cells of Micrococcus lysodeikticus to values close to those of HEWL, suggesting that the molecular bases of pH optimum upon natural and synthetic substrates are different. A structural comparison between lysozyme 1 and HEWL suggests that the charged amino acid residues on the surface of these lysozymes are important for pH optimum determination. The investigation of this hypothesis was done replacing 5 neutral and 1 acidic amino acids, via site-directed mutagenesis, by basic residues. The characterization of this mutant revealed a significant increase in the pH optimum values of lysozyme 1, suggesting that the reduction of basicity on the surface of the digestive lysozymes is a important factor in the determination of their acidic pH optimum.
207

Recherche d'haplotypes enzymatiques associés à des phénotypes métaboliques chez la tomate

Menard, Guillaume 29 November 2012 (has links)
La recherche de variations d’activités enzymatiques associées à des phénotypes chez la tomate (Solanum Lycopersicum) a permis d’apporter de nouveaux éléments pour l’étude desrelations existantes entre le métabolisme central et la qualité du fruit. Ce projet qui engageaitune nouvelle thématique au sein de l’unité Biologie et Pathologie de Fruit (UMR 1332, INRABORDEAUX) a permis dans un premier temps de développer une plateforme d’enzymologieà haut débit. Cette structure permet d’une part de réaliser plus de 10 000 déterminationsd’activités enzymatiques par jour avec une très grande reproductibilité et d’autre part dedéterminer les constantes de Michaelis (Km) apparentes pour jusqu’à une dizaine d’enzymespar jour.Dans un deuxième temps ce projet s’est attaché à étudier les relations existantes entre lesenzymes de la voie de la glycolyse chez le cultivar de tomate MicroTom. Nous y avonsrelevé l’existence de corrélations fortes entre les activités de ces enzymes. Nous avonségalement mis à jour l’existence de corrélations pour les enzymes mesurées à partir de deuxétages foliaires distincts ce qui suggère que les réseaux enzymatiques sont conservés ausein d’une plante.Dans un troisième temps, le criblage d’une collection de mutants de tomate MicroTom a étéentrepris. Ce criblage de plus de 150 familles (soit environ 1800 plantes) sur la base desactivités enzymatique de onze enzymes du métabolisme central à deux concentrations desubstrats différentes (saturante et non saturante) a abouti à l’identification de deux familles.Ces deux familles porteraient chacune une mutation affectant les caractéristiques cinétiquesde la Triose-Phosphate Isomérase. Ces mutations étaient toujours en cours d’étude à la finde ce projet. Ces résultats ouvrent de nouvelles perspectives pour la compréhension desrelations entre les enzymes du métabolisme central. Ils permettent aussi d’apporter desméthodes d’identification rapide de mutants enzymatiques au sein d’une large population. / Research on enzymatic variations associate with phenotypes in tomato (SolanumLycopersicun) provided new and original input regarding links between central metabolismand fruit quality. This project took part in a new topic of the Fruit Biology and Pathology Unit(UMR 1332, INRA BORDEAUX). First, during this project, a new high-throughputenzymology platform was created. This unique lab offers possibility to determine both morethan 10 000 enzyme activities per day with a very good reliability and apparent Michealisconstant (Km) for up to ten enzymes per day.Second, this project investigated existent relationship between glycolytic enzymes inMicroTom tomato cultivar. We highlighted strong correlations between enzymes in leaves.We also uncovered correlations between enzymes activities measured in two distinct foliarlevels. These elements suggest inheritability of the enzymes network within the plant.Third, the screen of an Ethylmethyl Sulfonate (EMS) MicroTom mutant’s collection wasinitiated. 150 families (around 1800 plants) were screened for eleven enzymes with twodifferent substrate concentrations. At the end of the process, two families were identified;both could have mutation(s) that affect(s) the kinetic characteristic of Triose-Phosphateisomerase. These mutations were style investigated at the end of this project. These originalresults provide new perspectives for knowledge of relationship between central metabolism’senzymes. Finally, This project proposes new and rapid enzymatic mutant identification withina large population as an EMS mutant’s collection.
208

Développement d’une plateforme de criblage par SPR pour la caractérisation d’inhibiteurs de la DHFR R67

Abraham, Sarah Mélissa Jane 04 1900 (has links)
Le projet de recherche a été réalisé en collaboration avec Professeur Jean-François Masson du Département de Chimie de l'Université de Montréal. The research project was made in collaboration with Professor Jean-François Masson from the Chemistry department of University of Montreal. / L'objectif du projet de recherche est de développer une méthode de criblage d’inhibiteurs basée sur une technologie émergente, soit un dispositif portatif utilisant la résonance des plasmons de surface (SPR). La cible du criblage est la dihydrofolate réductase R67 (DHFR R67), une enzyme qui confère une résistance bactérienne à l'antibiotique triméthoprime. Ici, l'enzyme cible est immobilisée sur une surface d'or mince avec des propriétés plasmoniques (optiques) spécifiques qui varient en fonction de la masse des molécules se liant à cette surface. Cette technique permet de suivre les événements de liaison de molécules à la DHFR R67 immobilisée, et ainsi peut permettre l'identification d'inhibiteurs potentiels. Cependant, la masse molaire des inhibiteurs typiquement utilisés lors de criblages préliminaires (i.e. 500-1000 g/mol) est trop faible pour générer un signal SPR détectable. Afin de contrer cette lacune, ce mémoire a pour objet de développer un essai compétitif indirect qui mettra en jeu des molécules de masse supérieure. D’abord, une nanoparticule d'or portant un analogue de substrat se liera à la DHFR R67 immobilisée à la surface d’or, générant ainsi un signal SPR important en raison de la masse molaire élevée de la nanoparticule. Ensuite, lors du criblage d'inhibiteurs potentiels, les nanoparticules liées seront déplacées de l'enzyme cible si la molécule criblée fournit une affinité suffisante. Ainsi, il sera possible de suivre indirectement la liaison d'un inhibiteur à la cible. Ce projet vise donc à tester et à valider l'approche de criblage SPR appliquée à la DHFR R67. / The objective of the research project is to develop a method for inhibitor screening based on a portable Surface Plasmon Resonance (SPR) device, an emerging technology. The target is R67 dihydrofolate reductase (R67 DHFR), an enzyme that confers bacterial resistance to the antibiotic trimethoprim. Here, the target enzyme is linked to a thin gold surface having specific plasmonic (optical) properties that vary as a function of the mass of bound molecules. This allows monitoring binding to the surface-linked R67 DHFR, and thus permits identification of inhibitors. However, the mass of the low-affinity inhibitors typically identified in early stages of screening (i.e. 500-1000 g/mol) is too low to produce a significant SPR signal. To address this shortcoming, a competitive assay will be developed: a gold nanoparticle carrying a substrate analog will bind the surface-immobilized R67 DHFR, resulting in a strong SPR signal due to its high mass. Then, upon screening for potential inhibitors, the bound nanoparticle will be displaced from the target enzyme if a molecule provides sufficient affinity. By those means, it will be possible to indirectly monitor the binding of an inhibitor to the target. This goal of this project is to test and validate the SPR screening approach applied to R67 DHFR.
209

Probing the Chemistry and Enzymology of Translesion DNA Synthesis: Applications in Developing a Novel “Theranostic” Agent against Leukemia

Motea, Edward A. 31 January 2012 (has links)
No description available.
210

Multi-disciplinary Investigation of the Kinetics and Protein Conformational Dynamics of DNA Replication and Oxidative DNA Damage Bypass and Repair

Maxwell, Brian Andrew 17 October 2014 (has links)
No description available.

Page generated in 0.0552 seconds