• Refine Query
  • Source
  • Publication year
  • to
  • Language
  • 101
  • 44
  • 21
  • 12
  • 8
  • 7
  • 7
  • 7
  • 7
  • 7
  • 7
  • 3
  • Tagged with
  • 231
  • 47
  • 44
  • 32
  • 26
  • 25
  • 22
  • 22
  • 21
  • 18
  • 18
  • 16
  • 15
  • 14
  • 14
  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
171

DISCOVERY AND CHARACTERIZATION OF INHIBITORS OF BACTERIAL METABOLISM / CHEMICAL GENETICS AND METABOLIC SUPPRESSION PROFILING IDENTIFY NOVEL INHIBITORS OF BACTERIAL BIOSYNTHETIC PATHWAYS

Zlitni, Soumaya 30 September 2014 (has links)
The alarming rise of antibacterial drug resistance and the dwindling supply of novel antibiotics highlight the need for innovative approaches in combating bacterial infections. Traditionally, antibacterial drug discovery campaigns have largely been conducted in rich media. Such growth conditions are not representative of the host environment and render many metabolic pathways, otherwise needed for survival and infection, dispensable. Such pathways have been overlooked in conventional drug discovery campaigns despite their validity as potential antibacterial targets. The work presented in this thesis focuses on the development and validation of a screening strategy for the identification and mechanism of action determination of novel inhibitors of metabolic pathways in bacteria under nutrient-limited conditions. This screen led to the identification of MAC168425, MAC173979 and MAC13772 as inhibitors that target glycine metabolism, p-aminobenzoic acid biosynthesis and biotin biosynthesis, respectively. Moreover, it established this approach as a general platform that can be applied for different organisms with synthetic or natural product libraries. Additional mechanistic studies of the biotin biosynthesis inhibitor, MAC13772, resulted in solving the crystal structure of BioA in complex with MAC13772. Analysis of the co-structure confirmed our proposed mode of inhibition and provided information for strategies for rational drug design. Investigation of the antibacterial activity of MAC13772 revealed its potency against a number of pathogens. Furthermore, we show how MAC13772 acts synergistically with rifampicin in clearing growing mycobacterial cultures. The potential of this inhibitor as a lead for preclinical pharmacokinetic studies and for antibacterial drug development is discussed. We also discuss our current efforts to develop a metabolomic platform for the characterization of novel antibacterials that can be used in concert with our current approach to chart the metabolic response of bacteria to chemical perturbants and to generate testable hypotheses regarding the mode of action of novel inhibitors of bacterial metabolism. / Thesis / Doctor of Philosophy (PhD)
172

Molecular probes for the evaluation of three isomerase enzyme mechanisms in secondary metabolism

Nasomjai, Pitak January 2010 (has links)
This thesis is focused on an investigation of the mechanisms of three enzymatically mediated carbon skeleton isomerisation reactions. Chapter 1 provides an overview of some representative examples of the carbon skeleton rearrangement reactions in enzymology. Chapter 2 describes the preparation and use of fluorolittorines to explore the mechanism of the rearrangement of the tropane alkaloid littorine to hyoscyamine which is a reaction mediated by the cytochrome P450 enzyme. Chapter 3 describes the synthesis of D-ribose-1-phosphonates and the cyclic phosphonates (phostone) that are candidate inhibitors of the enzymatic isomerisation of 5-fluoro-5-deoxy-ribose-1-phosphate (5-FDRP) to 5-fluoro-5-deoxy-ribulose-1-phosphate (5-FDRulP), an important step in fluorometabolite biosynthesis pathway in Streptomyces cattleya. Chapter 4 describes the synthesis of 5-hydroxy-3,4-dioxohexylphosphonate and [5-13C]-5-hydroxy-3,4-dioxohexylphosphonate. These compounds are proposed as candidates for the transition state of the retro-aldol/aldol mechanism of the enzymatic isomerisation of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methylerythitol-phophate-2-phosphate (MEP) in the biosynthesis of isopentenyl pyrophosphate (IPP) and dimethylallyl pyrophosphate (DMAPP). The influence of pH on tautomerisation of [5-13C]-5-hydroxy-3,4-dioxohexylphosphonate is also described. Chapter 5 describes the general chemical and biochemical methodologies utilised in this research project.
173

Roles of oxygenases in nucleic acid modification

Bagg, Eleanor Amy Louise January 2011 (has links)
2-Oxoglutarate (2OG) and Fe(II) dependent oxygenases have a broad range of substrates, extending from histones to fatty acids. Several 2OG oxygenases have nucleic acid substrates, with members of the AlkB subfamily being responsible for nucleic acid modification and repair. The AlkB protein itself is part of the Escherichia coli adaptive response, protecting the DNA from methylation damage. Methyl lesions are repaired by a direct removal mechanism via a hydroxylated intermediate, with release of formaldehyde. Homologues of AlkB have been identified throughout the vertebrates, with nine known human homologues: AlkB homologue 1-8 (ABH1-8) and Fat, mass and obesity associated protein (FTO). ABH2, ABH3 and FTO catalyse similar reactions to AlkB, whereas ABH8 methylates then hydroxylates modified wobble-position uridines in tRNA. The remaining homologues are of unknown function. The FTO gene is associated with obesity in humans, a link confirmed by mouse models; mice lacking FTO are thinner than wildtype individuals, whereas overexpression of FTO leads to increased mass. Investigation of recombinant FTO identified a novel C terminal helical domain which appears to mediate protein dimerisation in vitro. A loss of function mutation in this C terminal domain produces a lean phenotype in mice, emphasising the importance of this domain for the protein’s function in vivo. The FTO protein was further studied in cells, and localisation of several protein variant constructs were studied by immunofluorescence. Cell lysis and immunoprecipitation techniques were developed that enable proteomic analyses of proteins with which FTO may interact in cells. No protein interactors were confidently identified, suggesting that FTO may not interact with specific proteins in cells, and instead may preferentially interact with nucleic acids. Studies were initiated on two further members of the ABH family, ABH1 and ABH7. Recombinant proteins were prepared and characterised as 2OG oxygenases, however initial attempts to identify potential histone or nucleic acid substrates were not successful. Both proteins were found to be localised in the mitochondria, however proteomic analysis was unable to identify proteins interacting with either protein in cells. Selective inhibitors are required for in vivo inhibition of the ABH proteins. AlkB and ABH2 proteins were purified and characterised, and a formaldehyde dehydrogenase-coupled assay was developed to follow activity of these DNA demethylases. A dynamic combinatorial mass spectrometry method was employed to identify novel inhibitor scaffolds for AlkB, leading to the successful discovery of the first series of potent and selective inhibitors for this class of enzymes. Crystal structures of AlkB in complex with the most potent compounds were obtained, rationalising the inhibition observed. This work therefore suggests that therapeutic inhibition of this family of 2OG oxygenases is likely to be tractable.
174

Structure d'une tagatose-1,6-bisphosphate aldolase de classe I : étude d'une apparente perte de stéréospécificité

LowKam, Clotilde 10 1900 (has links)
La tagatose-1,6-biphosphate aldolase de Streptococcus pyogenes est une aldolase de classe I qui fait montre d'un remarquable manque de spécificité vis à vis de ses substrats. En effet, elle catalyse le clivage réversible du tagatose-1,6-biphosphate (TBP), mais également du fructose-1,6-biphosphate (FBP), du sorbose-1,6-biphosphate et du psicose-1,6-biphosphate, quatre stéréoisomères, en dihydroxyacétone phosphate (DHAP) et en glycéraldéhyde-3-phosphate (G3P). Afin de mettre à jour les caractéristiques du mécanisme enzymatique, une étude structurale de la TBP aldolase de S. pyogenes, un pathogène humain extrêmement versatile, a été entreprise. Elle a permis la résolution de la structure native et en complexe avec le DHAP, a respectivement 1.87 et 1.92 Å de résolution. Ces mêmes structures ont permis de se représenter plus clairement le site actif de l'enzyme en général, et les résidus catalytiques en particulier. Le trempage des cristaux de TBP aldolase dans une solution saturante de DHAP a en outre permis de piéger un authentique intermédiaire iminium, ainsi que sa géométrie particulière en atteste. Des expériences d'échange de proton, entreprises afin d'évaluer le stéréoisomérisme du transfert de proton catalytique, ont également permis de faire une intéressante découverte : la TBP aldolase ne peut déprotoner le coté pro-R du C3 du DHAP, mais peut le protonner. Ce résultat, ainsi que la comparaison de la structure du complexe TBP aldolase-DHAP avec la structure du complexe FBP aldolase de muscle de lapin- DHAP, pointe vers un isomérisme cis-trans autour du lien C2-C3 de la base de Schiff formée avec le DHAP. De plus, la résolution de ces deux structures a permis de mettre en évidence trois régions très mobiles de la protéine, ce qui pourrait être relié au rôle postulé de son isozyme chez S. pyogenes dans la régulation de l’expression génétique et de la virulence de la bactérie. La cristallographie par rayons X et la cinétique enzymatique ont ainsi permis d'avancer dans l'élucidation du mécanisme et des propriétés structurales de cette enzyme aux caractéristiques particulières. / Tagatose-1,6-biphosphate aldolase from Streptococcus pyogenes is a class I aldolase that shows a lack of stereospecificity that is rare in enzymes in general, and in aldolases in particular. This aldolase catalyzes the reversible cleavage of tagatose-1,6-biphosphate (TBP), fructose-1,6-biphosphate (FBP), sorbose-1,6-biphosphate and psicose-1,6-biphosphate, four stereoisomers, in dihydroxyacetone phosphate and glyceraldehyde-3-phosphate (DHAP). In order to understand its mechanism, a structural study of TBP aldolase from S. pyogenes, one of the most versatile and virulent human pathogen, was initiated and high resolution crystallographic structures of native and DHAP-liganded TBP aldolase were solved. These structures allowed us to gain informations regarding active site residues implicated in catalysis and that give rise to the apparent lack of specificity. Soaking of TBP aldolase crystals in saturating DHAP solution specifically trapped the iminium intermediate, as demonstrated by its geometry. Furthermore, proton transfer studies uncovered an interesting phenomenon: TBP aldolase from S. pyogenes is unable to detritiate pro-R labelled hydrogen position at C3 of DHAP, yet it is able to tritiate both the pro-R and the pro-S position. These results, taken together with the superposition of the DHAP-TBP aldolase with the DHAP-FBP aldolase from rabbit muscle, suggest a cis-trans isomerism about the Schiff base C2-C3 bond. The resolution of both the native and the liganded structure also proved useful in identifying three very mobile regions in the protein. This trend could be linked to the putative metabolic sensor and genetic expression regulator role of LacD.1 in S. pyogenes. X-rays crystallography and traditional enzymatic kinetics allowed us to gain insights into the catalytic mechanism and others structural properties of this important metabolic enzyme.
175

Caracterização funcional dos resíduos centrais da rede estrutural da β-glicosidase Sfβgli de Spodoptera frugiperda / Functional characterization of the central residues of the structural network of β-glucosidase Sfβgly from Spodoptera frugiperda

Ikegami, Cecília Midori 14 May 2013 (has links)
Na última década, a análise da estrutura proteica baseada em teoria de redes/grafos tem emergido. A abstração da estrutura tridimensional proteica em forma de uma rede, leva em consideração os resíduos de aminoácidos e suas interações através do espaço, e apresenta um conjunto de conexões e propriedades mais complexas do que aquelas visualizadas apenas com a estrutura covalente. A análise da estrutura proteica identificou que as proteínas pertencem às redes de classes de \"mundo pequeno\" (small-world) e \"sem escala\" (scale-free), o que significa que seus resíduos de aminoácidos são altamente agregados e que existem poucas conexões entre 2 resíduos quaisquer da proteína. A identificação dos resíduos com alto grau de conexão, chamados centrais (\"resíduos hubs\"), é feita pela determinação do caminho mais curto que conecta um dado resíduo aos demais compreendidos nesta rede. A remoção destes resíduos centrais (hubs) afeta a integridade da rede de forma mais contundente diferentemente da remoção de resíduos que não são centrais. Até o momento estes \"resíduos hubs\" ainda não foram experimentalmente correlacionados com as propriedades enzimáticas de proteínas. Para tal finalidade, a estrutura terciária de uma β-glicosidase de Spodoptera frugiperda (Sfβgli) foi analisada como uma rede. Após calcular-se os caminhos médios entre todos os pares de aminoácidos da β-glicosidase, encontrou-se 11 resíduos centrais (\"resíduos hubs\"). Alinhamento de sequências e comparações estruturais indicaram alta conservação destes \"resíduos hubs\". Nosso objetivo foi produzir esta β-glicosidase mutando-se a maioria dos \"resíduos hubs\" e 3 aminoácidos não centrais (\"não hubs\"), expressar estes mutantes em E. coli, determinar suas propriedades enzimáticas como atividade catalítica e preferência pelo substrato e verificar a estabilidade destes mutantes em experimentos de inativação térmica. Os resultados obtidos sugerem que mutações nos \"resíduos hubs\" não afetam as propriedades catalíticas, contudo as enzimas com mutações nos \"resíduos hubs\" apresentaram uma menor estabilidade térmica. Estes resultados sugeriram que os \"resíduos hubs\" são relevantes na difusão da energia cinética (vibração) introduzida na estrutura desta β-glicosidase pelo seu aquecimento / In recent years, graph-theoretic approaches have established that protein structures can be modeled as complex networks of interacting residues. Proteins structures can be represented as small-world and scale-free networks that are usually highly clustered with few links connecting any pair of nodes. The identification of nodes with high connection degrees, called hubs, is made by determining the shortest path linking one amino acid to the further nodes comprising the network. Targeted removal of the hubs has greater affect on the integrity of the network structure in contrast to a random removal of amino acid residues comprising the network. Nevertheless these hubs had not previously been correlated with enzymatic properties. The tertiary structure of β-glycosidase from S. furgiperda (Sfβgly) was analyzed as a network. After calculating the averaged paths between all pairs of amino acid residues of Sfgly, we defined 11 hubs, which have the highest centrality on the network. Sequence alignment and structural comparison showed that these hubs residue are conserved among β-glycosidases. Our goal was to mutate most hubs and 3 ´non-hubs´ residues from Sfβgly, express these mutant enzymes in E. coli, test their enzymatic properties as catalytic efficiency and substrate preference, and verify the thermal stability of these mutants. The results implied that mutations in these hubs do not cause changes in catalytic properties although enzymes containing mutations in hubs showed lower thermal stability. Based on that, it was suggested that hub residues are important in the diffusion of kinetic energy (vibrations) introduced in the Sfβgly structure by heating
176

Estudos toxinológicos do ouriço-do-mar Echinometra lucunter. / Toxinologic studies about Echinometra lucunter sea urchin.

Sciani, Juliana Mozer 31 July 2012 (has links)
Echinometra lucunter, o ouriço-do-mar responsável por 50% dos acidentes por animais marinhos, causa inflamação e dor quando os espinhos entram na pele, efeitos atribuídos ao trauma mecânico, além de acidentes por ingestão de ovas. O líquido celômico e o extrato aquoso de espinhos foram fracionados e purificados até a obtenção de moléculas puras, que foram testadas em modelos de inflamação. Foram feitas análises histológicas do espinho e de atividade enzimática do extrato de espinho. Foi isolada uma molécula do espinho e um peptídeo do líquido celômico, que causaram inflamação e dor. Foi verificada atividade enzimática de catepsina B/X. Foi observada uma estrutura histológica organizada no espinho, com células entre a porção calcificada, algumas contendo grânulos eletrodensos com conteúdo protéico, típicas secretoras. Conclui-se que o espinho e o líquido celômico de E. lucunter possuem toxinas inflamatórias, que participam do envenenamento e o espinho tem células secretoras de toxinas. A catepsina pode auxiliar no mecanismo de reparação do espinho, quando quebrado. / Echinometra lucunter, the sea urchin responsible for 50% of marine animals accidents, cause inflammation and pain by the spine penetration, effects attributed to the mechanical trauma. Accidents were reported after the ingestion of raw. The celomic fluid and spines were fractionated and purified, procedure repeated until pure molecules were obtained, tested for inflammation models. Histological analyses and enzymatic assays were performed. A molecule from spines and a peptide from the celomic fluid caused inflammatory effects. Moreover, a cathepsin B/X activity could be identified in the spines. An organized histological structure in the spine was observed, with cells embedded in a calcified matrix, as well as granulous cells displaying proteic contents, typical of secretory cells. It was possible to conclude that the spine and the celomic fluid of E. lucunter do contain inflammatory toxins that prolong the spine puncturing event itself, and the spine possesses a toxin secretory structure. The cathepsin would be present in a mechanism of tissue remodeling.
177

Purificação e caracterização de β-1,3-glucanases de insetos / Purification and characterization of β-1,3-glucanases from insects

Genta, Fernando Ariel 14 April 2004 (has links)
P. americana e T. molitor são capazes de secretar β-1,3-glucanases no tubo digestivo, pelas glândulas salivares e pelo epitélio do ventrículo, respectivamente. As laminarinases majoritárias de P. americana (LIQ1, 42kDa; LAM_P, 45kDa), A. flavolineata (LAM_A, 45kDa) e T. molitor (LAM_T, 50kDa) foram purificadas até a homogeneidade. Essas enzimas têm diferentes especificidades, padrões de ação e resíduos envolvidos em catálise, fazendo parte dos E.C. 3.2.1.6 - endo-β-1,3(4)-glucanase (LIQ1), E.C. 3.2.1.39 - endo-β-1,3-glucanase (LAM_P) ou E.C. 3.2.1.58 - exo-β-1,3-glucanase (LAM_A e LAMT). O papel dessas enzimas é digerir β-glucanas de fungos e de cereais. LAM_P e LAMA são inibidas por laminarina, pela formação de complexos enzima-substrato não-produtivos. LIQ1, LAM_P e LAM_A são enzimas processivas, com diferentes graus de ataque múltiplo e produzem série distintas de oligossacarídeos. LAM_A possui um sítio acessório de ligação para laminarina, o qual pode estar envolvido no mecanismo de processividade. Quitinases digestivas de insetos podem ser diferentes das descritas até o momento. A. flavolineata e T. molitor possuem sistemas celulásicos completos. Os três insetos apresentam proteínas de baixo peso molecular capazes de ligar-se a celulose ou a pachyman. O ancestral dos hexapoda provavelmente possuía β-1,3 e β-1,3(4) glucanases digestivas associadas a um hábito detritívoro. / P. americana salivary glands and T. molitor midgut epithelium actively secrete laminarinases into the midgut. The major laminarinases from P. americana (LIQ1, 42kDa and LAM_P, 45kDa), A. flavolineata (LAM_A, 45kDa) and T molitor (LAM_T, 50kDa) were purified until homogeneity. These enzymes have different specificities, action patterns and activesite catalytic groups, and correspond to E.C.s 3.2.1.6 - endo-β-1,3(4)-glucanase (LIQ1), 3.2.1.39 - endo-β-1,3-glucanase (LAM_P) or 3.2.1.58 -exo-β-1,3-glucanase (LAM_A and LAM_T). Their physiological role is fungai and cereal β-glucan digestion. LAM_P and LAM_A are inhibited by excess substrate (non-productive enzyme-substrate complexes). LIQ1, LAM_P and LAMA have different multiple attack degrees and produce different oligosaccharides. LAM_A has a second substrate binding site, probably involved with processivity. T. molitor digestive chitinase is different from other insect chitinases. A. flavolineata and T. molitor can hydrolyse cristalline cellulose efficiently. The three studied insects have cellulose or pachyman-binding proteins with low molecular weights. Hexapoda ancestors probably had digestive β-1,3 and β-1,3(4)-glucanases and a detritivore habit.
178

Função de subsítios de uma catepsina digestiva de Tenebrio molitor / Subsites role of a Tenebrio molitor digestive cathepsin

Damasceno, Ticiane Fraga 27 May 2014 (has links)
A catepsina L, uma cisteína proteinase da família da papaína, é a principal proteinase digestiva do besouro Tenebrio molitor. Estudos anteriores do nosso grupo mostraram que existem três catepsinas L no intestino médio do T. molitor, uma delas é lisossômica (CAL 1) e as outras duas são digestivas (CAL 2 e CAL 3). As estruturas 3D das enzimas digestivas foram recentemente elucidadas. Com o objetivo de estudar em detalhes as propriedades das enzimas digestivas, CAL 3 foi expressa como um zimógeno em E. coli, purificada por cromatografia de afinidade e autoativada em meio ácido. Foram realizados ensaios de atividade com 63 peptídeos FRET derivados da sequência Abz-KLRSSKQ-EDDnp em um espectrofluorímetro termostatizado a 30 ºC, monitorando-se continuamente a variação de fluorescência em 320 nm (λex) e 420 nm (λem). Os parâmetros kcat e KM obtidos foram utilizados na determinação da hidrofobicidade dos subsítios (H) e da função de cada subsítio através da razão das energias livres de ativação do complexo enzima-substrato (ΔG‡T) e de ligação da enzima com o substrato (ΔGs). Os resultados mostram que o subsítio S2 está envolvido prioritariamente em catálise e é bastante seletivo para substratos com resíduos hidrofóbicos em P2. Esse subsítio é o mais hidrofóbico dentre os analisados, encontrando-se num bolsão localizado no interior da enzima. O subsítio S\'2, por outro lado, é o que apresentou a menor especificidade dentre os analisados. Este subsítio está envolvido prioritariamente na ligação com o substrato e se localiza na superfície da enzima, o que pode facilitar a acomodação de diferentes cadeias laterais em P\'2 do substrato, não oferecendo muitas restrições espaciais. O subsítio S1, hidrofílico, não é muito seletivo, o que pode ser consequência de sua localização na superfície da enzima. Esse subsítio está prioritariamente envolvido na ligação com o substrato. O subsítio S\'1, assim como S1, está localizado na superfície da enzima, é hidrofílico e não muito seletivo. No entanto, esse subsítio tem papel na catálise além de atuar na ligação do substrato. Numa análise inicial da estrutura 3D deste subsítio, sua função catalítica foi atribuída à presença de parte da cavidade oxiânica. Uma enzima com mutação no resíduo W187, pertencente à cavidade oxiânica e a S\'1, foi produzida e purificada, no entanto essa enzima não apresentou atividade. Uma análise mais aprofundada mostrou que a falta de atividade pode ser atribuída ao fato do resíduo de aminoácido mutado fazer parte de um cluster aromático essencial à estabilização da tríade catalítica. Os dados obtidos na caracterização de S\'1 e S\'2 permitem inferir que a acilação é o passo limitante da reação da CAL 3. Além disso, os resultados deste trabalho mostram que o conceito de hidrofobicidade de subsítios proposto anteriormente pelo grupo parece ser aplicável a subsítios que apresentem especificidades mais restritas. / Cathepsin L, a cysteine proteinase of the papain family, is the major digestive proteinase in the beetle Tenebrio molitor. Previous studies of our group showed that there are three cathepsins L in T. molitor midgut, one is lysosomal (CAL1) and two are digestive (CAL2 and CAL3). The 3D structures of the digestive enzymes were recently elucidated. With the aim to study in details the digestive enzymes specificities, CAL3 was expressed in E. coli as a zymogen, purified by affinity chromatography and autoactivated in acid conditions. Activity assays were performed in a thermostated spectrofluorometer at 30 ºC with 63 FRET peptides derived from the lead sequence Abz-KLRSSKQ-EDDnp, continuously monitoring the fluorescence changes at 320 nm (λex) and 420 nm (λem). The parameters kcat and KM were used in the determination of subsite hydrophobicity (H) and subsite role based on the ratio of complex enzyme-substrate activation energy (ΔG‡T) and free energy of substrate binding (ΔGs). The data obtained suggest that the S2 is mainly involved in catalysis and is very selective to substrates with hydrophobic residues in P2. This subsite is the most hydrophobic among the analyzed and is located in a pocket in the enzyme interior. S\'2, on the other hand, is the less selective subsite and is mainly involved in substrate binding and is located on the enzyme surface, what can ease the accommodation of different side chains located in P\'2 by not imposing many spatial restrictions. S1, is hydrophilic and not very selective, what may be a consequence of its location on the enzyme surface. This subsite is mainly involved in substrate binding. S\'1, just like S1, is located on the enzyme surface, is hydrophilic and not very selective. However this subsite has a role in catalysis besides the role in substrate binding. In an initial 3D structure analysis its catalytic function was attributed to the presence of a part of the oxyanion hole. An enzyme with mutation in the residue W187, which apparently belonged both to the oxyanion hole and S\'1, was produced and purified, but this enzyme was inactive. A better analysis showed that the lack of activity can be attributed to the fact that the mutated residue belongs to an aromatic cluster that is essential to the catalytic triad stabilization. The data obtained in S\'1 and S\'2 characterization suggest that acylation is the limiting step in CAL 3 reaction. The results presented in this work support the concept of subsite hydrophobicity previously proposed by our group, which seems to be true to subsites with more restrict specificities
179

Regeneração de nucleotídeos β-nicotinamida adenínicos solúveis ou imobilizados em sistemas com enzimas acopladas / Regeneration of nucleotides β-nicotinamide adenine soluble or immobilized enzyme coupled systems.

Andreotti, Diana Zukas 10 February 2010 (has links)
As bioconversões executadas com enzimas, que requerem NADP ou NADPH, são limitadas pela eficiência com que esta substância é mantida na forma particular requerida pelo catalisador ao longo de toda a reação, assim como pela sua recuperação no final do processo. Neste trabalho, foram caracterizadas as enzimas Glicose-6-fosfato desidrogenase (G6PDH) e Glutamato desidrogenase (GLUDH), além do estudo do reciclo NADP/NADPH em sistema constituído por essas enzimas. Determinou-se a temperatura (30ºC) e pH ótimo da G6PDH (pH 7,5), assim como a temperatura (40ºC) e o pH ótimo (pH 8,0) da GLUDH, além dos volumes e concentrações dos substratos utilizados na hidrólise enzimática. No caso da reação acoplada descontínua, a duração foi de 90min, às temperaturas de 30ºC e 40ºC, utilizando-se o cofator solúvel ou imobilizado. Em ambas as condições, mais de 85% das concentrações iniciais de G6P e NH4+, respectivamente, substratos da G6PDH e GLUDH, foram convertidas, sendo o reciclo NADP/NADPH mantido durante toda a reação. No caso da reação bienzimática em reator contínuo, não foi possível chegar ao estado estacionário da reação e a conversão dos subsratos G6P e NH4+ variaram de acordo com o período do teste. / The Bioconversion performed with enzymes that require NADPH or NADP are limited by the efficiency with which this substance is maintained in the particular form required by the enzyme throughout the reaction, as well as for his recovery at the end of the process. The main aim of this work was to study the NADP/NADPH recycling through a bienzyme coupled reaction constituted by glucose-6-phosphate dehydrogenase (G6PDH) and glutamate dehydrogenase (GLUDH). The reaction was carried out in the discontinuous or continuous mode. The discontinuous process, which was carried out with soluble or immobilized NADP at 30°C or 40°C, had a total duration of 90min. Independently on the temperature used, around 85% of the initial concentration of glucose 6-phosphate (G6P) and ammonia were consumed, being the recycle of NADP/NADPH maintained throughout the reaction. In the continuous process, the addition of G6P and ammonia into the membrane reactor was made by turns of 2h. During the 15h-process the NADP/NADPH recycling was attained and the mean consumption yield of ammonia and G6P neared 30% and 60%, respectively.
180

Regeneração de nucleotídeos β-nicotinamida adenínicos solúveis ou imobilizados em sistemas com enzimas acopladas / Regeneration of nucleotides β-nicotinamide adenine soluble or immobilized enzyme coupled systems.

Diana Zukas Andreotti 10 February 2010 (has links)
As bioconversões executadas com enzimas, que requerem NADP ou NADPH, são limitadas pela eficiência com que esta substância é mantida na forma particular requerida pelo catalisador ao longo de toda a reação, assim como pela sua recuperação no final do processo. Neste trabalho, foram caracterizadas as enzimas Glicose-6-fosfato desidrogenase (G6PDH) e Glutamato desidrogenase (GLUDH), além do estudo do reciclo NADP/NADPH em sistema constituído por essas enzimas. Determinou-se a temperatura (30ºC) e pH ótimo da G6PDH (pH 7,5), assim como a temperatura (40ºC) e o pH ótimo (pH 8,0) da GLUDH, além dos volumes e concentrações dos substratos utilizados na hidrólise enzimática. No caso da reação acoplada descontínua, a duração foi de 90min, às temperaturas de 30ºC e 40ºC, utilizando-se o cofator solúvel ou imobilizado. Em ambas as condições, mais de 85% das concentrações iniciais de G6P e NH4+, respectivamente, substratos da G6PDH e GLUDH, foram convertidas, sendo o reciclo NADP/NADPH mantido durante toda a reação. No caso da reação bienzimática em reator contínuo, não foi possível chegar ao estado estacionário da reação e a conversão dos subsratos G6P e NH4+ variaram de acordo com o período do teste. / The Bioconversion performed with enzymes that require NADPH or NADP are limited by the efficiency with which this substance is maintained in the particular form required by the enzyme throughout the reaction, as well as for his recovery at the end of the process. The main aim of this work was to study the NADP/NADPH recycling through a bienzyme coupled reaction constituted by glucose-6-phosphate dehydrogenase (G6PDH) and glutamate dehydrogenase (GLUDH). The reaction was carried out in the discontinuous or continuous mode. The discontinuous process, which was carried out with soluble or immobilized NADP at 30°C or 40°C, had a total duration of 90min. Independently on the temperature used, around 85% of the initial concentration of glucose 6-phosphate (G6P) and ammonia were consumed, being the recycle of NADP/NADPH maintained throughout the reaction. In the continuous process, the addition of G6P and ammonia into the membrane reactor was made by turns of 2h. During the 15h-process the NADP/NADPH recycling was attained and the mean consumption yield of ammonia and G6P neared 30% and 60%, respectively.

Page generated in 0.0389 seconds