Introduction: Les cadres de lectures alternatifs (CLA) sont utilisés par de multiples virus afin de générer plusieurs protéines à partir d'une seule séquence nucléotidique. Les épitopes dits « cryptiques », c’est-à-dire les épitopes dérivés de protéines codées dans des CLAs, ont étés dernièrement l’objet de différentes études portant sur la réponse immunitaire antivirale et les lymphocytes T cytotoxiques. Méthodologie: Afin de vérifier le potentiel immunogène d'épitopes encodés dans des CLAs programmés, trois cassettes ont été construites pour mener à l'expression de trois épitopes bien caractérisés (épitope GAG77–85 du virus de l'immunodéficience humaine de type 1; épitope NS31406-1415 du virus de l'hépatite C; épitope core18-27 du virus de l'hépatite B) à partir de trois cadres de lectures superposés. La première cassette permet une initiation alternative de la traduction, la deuxième comprend deux signaux bipartites en tandem permettant un frameshift ribosomique et la troisième est une cassette contrôle. Ces éléments ont été introduits dans des vecteurs adénoviraux. Les virions générés ont servi à immuniser des souris C57BL/6 transgéniques pour HLA-A*0201 et HLA-DR1. La réponse immunitaire induite une semaine post-immunisation a été mesurée par essai ELISpot IFN . Résultats: Dans le contexte de cassettes vaccinales, les peptides dérivés d'une initiation alternative de traduction et de changement de cadre de lecture ribosomique ribosomal peuvent être exprimés et détectés par le système immunitaire dans un modèle animal. Conclusion: Ces expériences suggèrent la possibilité de développer de nouvelles stratégies vaccinales dans le but de prévenir ou de guérir certaines maladies associées aux infections virales chroniques telles que celles causées par le virus de l’immunodéficience humaine et le virus de l’hépatite C. / Introduction: Alternative reading frames (ARFs) are used by multiple viruses in order to generate different proteins from a single nucleotide sequence. Cryptic epitopes, which comprise antigens derived from proteins encoded in ARFs, have recently been the focus of studies pertaining to antiviral immunity and cytotoxic T lymphocytes. Methodology: In order to verify the immunological potential of epitopes encoded in programmed ARFs, three cassettes were constructed to permit the expression of three welldescribed epitopes (GAG77–85 epitope of human immunodeficiency virus type 1; NS31406-1415 epitope of hepatitis C virus; core18-27 epitope of hepatitis B virus) from three overlapping reading frames. The first cassette permits alternative translation initiation, the second cassette includes signals inducing ribosomal frameshifting and the third cassette serves as a control. These elements were introduced into adenoviral vectors. Recombinant adenoviruses were used to immunize C57BL/6 transgenic mice expressing HLA-A*0201 and HLA-DR1. The immune response induced was measured one week following immunization using IFN ELISpot assays. Results: In the context of vaccine cassettes, peptides derived from alternative translation initiation and ribosomal frameshifting can be expressed and detected by the immune system in an animal model. Conclusion: These findings suggest the possibility of designing vaccination strategies in the hope of preventing or curing certain diseases associated with chronic viral infections, such as those caused by human immunodeficiency virus and hepatitis C virus.

A tuberculose (TB) é uma doença infecciosa causada pelo Mycobacterium tuberculosis, que necessita de uma vacina mais efetiva, pois a única vacina licenciada apresenta eficácia variando entre 0 a 80%. Entre as estratégias em desenvolvimento destaca-se a vacina DNAhsp65, que consiste de um plasmídeo carregando o gene hsp65 de Mycobacterium leprae, que demonstra eficácia na profilaxia da TB. Como as HSPs são proteínas altamente conservadas e podem desencadear respostas auto-imunes, seria interessante o desenvolvimento de uma vacina baseada na utilização apenas dos epítopos da proteína Hsp65 reconhecidos por células T. Estudos com vacinas de DNA baseadas na fusão de peptídeos à glicoproteína D (gD) do Herpes Vírus Tipo-1 têm mostrado maior ativação de linfócitos T e B peptídeos-específicos. Dessa forma, o presente trabalho teve como objetivo a construção e avaliação da imunogenicidade de vacinas de DNA constituídas pelo gene da proteína gD e a seqüência gênica que codifica os cinco epítopos da Hsp65. Para a obtenção da seqüência codificadora dos epitopos, denominada Vac1, foi realizada uma síntese gênica e em seguida, essa seqüência foi fusionada ao gene que codifica a gD em dois sítios presentes em seu interior, no sítio da enzima ApaI e entre os sítios das enzimas PvuII e ApaI, com a retirada de uma porção central da gD. Além dessas construções, também foi realizada a construção da Vac2 pela ligação de fragmentos Vac1 que em seguida foi fusionada ao gene da gD no sítio de ApaI. Essas construções, gDVac1AA, gDVac1PA e gDVac2 foram clonadas no vetor pVAX1 e avaliadas quanto a expressão das proteínas. Após a caracterização, camundongos foram imunizados com quatro doses das vacinas e a imunogenicidade avaliada após trinta dias da última dose. Os ensaios ex vivo foram realizados com o soro para dosagem de anticorpos e com as células do baço, que foram estimuladas com as proteínas Hsp65, Vac1 e Vac2. Como resultado, obtivemos duas construções vacinais, pVAXgDVac1PA e pVAXgDVac2, eficientes em induzir anticorpos do subtipo IgG2a específicos a proteína e aos epitopos da Hsp65 e as três vacinas, pVAXgDVac1AA, pVAXgDVac1PA e pVAXgDVac2, foram capazes de induzir proliferação de linfócitos T e produção de IFN- após estímulo ex vivo. As vacinas foram, portanto, eficazes em desencadear um padrão de resposta Th1 importante no combate ao bacilo M. tuberculosis. / Tuberculosis (TB) is an infectious disease, caused by the infection with Mycobacterium tuberculosis and needs a vaccine more effective, for the only current permitted vaccine shows its effectiveness varying of 0-80%. DNAhsp65 vaccine is among the strategy in development, it consists of a plasmid loading the Mycobacterium leprae hsp65 gene and has been efficient in the prophylaxy of TB. As the HSPs are conserved and they can induce autoimmune disease, a vaccine based only in the epitopes of the Hsp65 protein recognized for T cells could be more interesting. Studies with DNA vaccines based on the fusion of peptides to Herpes Type Virus-1 D glycoprotein (gD) have improved the activation of peptide-specific T and B cells. In this context, the aim of this study was the construction of DNA vaccines encoding gD protein plus Mycobacterium leprae Hsp65 protein epitopes and the evaluation of its immunogenicity. The gene sequence encoding the five Hsp65 epitopes, called Vac1, was obtained by synthetic gene and, after that, this sequence was fusioned in two sites inside gene that enconding the gD, in the ApaI enzyme site and between the PvuII and ApaI enzyme sites with the withdrawal of a gD central portion. In addition, Vac2 was contructed through the linking of Vac1 fragments followed by its insertion in the ApaI site inside gD gene. These constructions, gDVac1AA, gDVac1PA and gDVac2 were cloned in pVAX1 vector and they were evaluated to protein expression. After the characterization, mice were immunized with four doses of vaccine and the immunogenicity was evaluated after thirty days from the last immunization. The ex vivo assays were carried by quantification of antibodies in the serum and the splenocytes were stimulated with the Hsp65, Vac1 and Vac2 proteins. As result, two vaccine constructions, pVAXgDVac1PA and pVAXgDVac2 were efficient in the induction of IgG2a subtype antibodies specific to Hsp65 protein and its respective epitopes. All the three vaccines pVAXgDVac1AA, pVAXgDVac1PA and pVAXgDVac2 were capable to induce T cell proliferation and IFN- production after stimulation. Therefore, the vaccines were efficient to induce a Th1 profile which is important in the combat to Mycobacterium tuberculosis bacillus.

Das Humane Immundefizienzvirus (HIV) ist der Erreger von AIDS und als Zoonose von den Schimpansen (HIV-1) bzw. den Rauchmangaben (HIV-2) auf die menschliche Population übergesprungen. Diese Primatenspezies sind die natürlichen Wirte für die simianen verwand-ten Viren SIVcpz bzw. SIVsm. Die nicht-natürlichen Virus-Wirt-Beziehungen der Immundefizienzviren resultieren in einem pathogenen Verlauf, wie HIV im Menschen und SIVmac in Rhesusmakaken. Die natürlichen Wirte Rauchmangaben, Schimpansen, Afrikanische Grüne Meerkatzen (AGM) und viele mehr entwickeln hingegen kein simianes AIDS. Dies erfolgt trotz lebenslanger Infektion mit SIV und einer zur HIV-Infektion im Menschen äquivalenten Viruslast. Die natürlichen Wirte weisen darüber hinaus keine Immunantwort gegen das virale Kernprotein Gag (gruppen-spezifisches Antigen) auf, was ein früh und zahlreich gebildetes Protein während der Virusreplikation ist. Die fehlende humorale Immunantwort könnte die natürlichen Wirte vor Aktivierung des Immunsystems und dadurch auch vor sAIDS bewahren. Frühere Versuche in AGM mit injiziertem SIVagmGag-Protein zeigten zwar, dass die Induktion einer humoralen Immunantwort gegen SIVagmGag möglich ist, diese aber schon nach kurzer Zeit wieder absinkt. Des Weiteren bildete sich durch Infektion mit SIVagm in den Tieren keine anamnestische Immunantwort heraus, die für die Erkennung von gleichen Epitopen maßgeblich ist. Es scheint ein Unterschied in der Erkennung von exogenem injiziertem SIVagmGag-Protein zu endogenem, durch das Virus selbst gebildetem, Protein in den AGM zu bestehen. Folglich wurde die Hypothese aufgestellt, dass eine Immunisierung mit SIVagmGag-DNA unter Umgehung des Unterschieds in der Proteinprozessierung eine anamnestische Immunantwort in den AGM induziert. Um diese Hypothese zu testen und die Gag-Immunreaktion in Abwesenheit anderer viraler Gene bezüglich der Pathogenität zu evaluieren, wurden codonoptimierte SIVagmGag- und SIVmacGag-DNA Immunisierungsvektoren generiert. Die Proteinexpression wurde in vitro und die Immunogenität in Balb/c und C57Bl/6 Mäusen getestet. Jeweils eine Gruppe von vier AGM erhielt bioballistisch SIVagmGag-DNA bzw. SIVmacGag-DNA. Als Kontrollen dienten mit codonoptimierter DNA immunisierte Rhesusmakaken sowie mit Leervektor immunisierte Primaten beider Spezies. Als Kostimulanz wurde zusätzlich jeweils speziesspezifische gmcsf DNA verwendet. Im Gegensatz zu den Rhesusmakaken konnte in den AGM durch DNA-Immunisierung keine zelluläre und nur eine schwache, transiente humorale anamnestische Immunantwort nach Infektion induziert werden, obwohl beide Gag-Proteine endogen produziert wurden. Daher kann die fehlende anamnestische Immunantwort der AGM nach Immunisierung mit Gag-Protein vermutlich nicht auf Unterschiede in der Proteinprozessierung und -erkennung (endogen versus exogen) zurückgeführt werden. Die Ergebnisse dieser Studie deuten an, dass während der Infektion dieses natürlichen Wirtes eine aktive Unterdrückung der anti-Gag-Antikörperantwort stattfindet, möglicherweise induziert durch eine Anergie in Gag-spezifischen T-Helferzellen. / The causative agents of AIDS, the human immunodeficiency viruses (HIV-1 and HIV-2), were transmitted zoonotically to the human population from the natural hosts of the related simian immunodeficiency viruses SIVcpz (chimpanzees) and SIVsm (sooty mangabeys), respectively. In contrast to the outcome of infections in non-natural hosts (e.g. HIV in humans, SIVmac in rhesus macaques), the natural hosts of SIV do not develop simian AIDS-like symptoms despite life-long infection with virus loads matching those seen in HIV-infected humans. Many such natural host primates infected with SIV, such as SIVagm-infected African green monkeys (AGMs), fail to mount an antibody response to the intact viral core protein Gag (group-specific antigen), a protein produced extensively during infection. It has been postulated that this lack of an immune response to Gag could protect the natural hosts from immunopathological effects and therefore from simian AIDS. Previous studies in AGMs indicated that Gag protein produced endogenously during infection is ''seen'' by the immune system differently than that introduced exogenously by protein immunisation, possibly through differences in processing or through specific tolerance at the T-cell level. To address these possibilities, primate studies were performed in which the responses in the natural and non-natural hosts to endogenously produced Gag protein in the absence of other viral genes were compared and the influence of such endogenous priming on the immune response to infection was evaluated. This was achieved by bioballistic immunisation of AGMs and rhesus macaques with codon-optimised DNA coding for SIVagm or SIVmac Gag protein delivered together with DNA coding for the species-specific GM-CSF cytokine. Prior to the primate studies, the DNA constructs were evaluated in BALB/c and C57Bl/6 mice for immunogenicity and protein expression. In contrast to the rhesus macaques, SIVagmGag DNA immunisation of African green mon-keys generally failed to prime for an anamnestic cellular immune response and primed for only a weak, transient anamnestic humoral response to the protein upon infection, despite the proteins resulting from both immunisation and infection being produced endogenously. Differences in protein processing and recognition (endogenous versus exogenous) do not therefore appear to account for the lack of priming for an anamnestic immune response seen using a protein immunogen. Rather, the results seem to indicate that an active suppression of the anti-Gag immune response may occur during infection of this natural host of SIV, possibly by the induction of anergy in Gag-specific Th cells.

Da Filarieninfektionen noch immer chemotherapeutisch schwer bekämpfbar sind, ist die Aufklärung von potentiell protektiven Molekülen, die zur Impfstoffentwicklung von Nutzen sein könnten, von Bedeutung. Ein vielversprechendes Antigen stellt in diesem Zusammenhang die Chitinase von infektiösen Drittlarven von Onchocerca volvulus dar. In dieser Arbeit sollte deshalb dieses Protein immunologisch charakterisiert und immundominante Bereiche identifiziert werden. Dazu wurde die cDNA des gesamten Proteins (OvL3-Chitinase) und die cDNA der Domäne, die für die Chitin-Bindung verantwortlich ist (OvL3-CBD), in einen Expressionsvektor kloniert, in E. coli exprimiert und aufgereinigt. Die aufgereinigte OvL3-Chitinase zeigte enzymatische Aktivität. Die OvL3-Chitinase und die OvL3-CBD wurden in Immunisierungsstudien im Tiermodel der Nagetierfilarie A. viteae und M. unguiculatus eingesetzt. Während die Immunisierung mit OvL3-CBD mit dem Adjuvans Alum zu keiner Reduzierung der Adultwurmlast führte, war nach Gabe der OvL3-Chitinase die Anzahl der Adultwürmer um 40 % bzw. um 17,7% reduziert. Zusätzlich wurde die OvL3-Chitinase allein und in Kombination mit zwei verschiedenen Adjuvantien (STP und Alum) in Immunisierungsstudien von BALB/c-Mäusen eingesetzt, deren Immunantworten anschließend charakterisiert wurden. Durch diese Versuche konnte gezeigt werden, daß die Chitinase ohne zusätzliche Gabe eines Adjuvans unter den getesteten Bedingungen eine TH2-Immunantwort induziert. Dies wurde durch die Anwesenheit von Antikörpern der Subklasse IgG1 deutlich. Außerdem waren Milzzellen dieser Mäuse nicht in der Lage, nach Restimulation mit Chitinase mit Proliferation zu reagieren. Durch den Einsatz der Adjuvantien STP und Alum konnte eine Polarisation der Immunantworten erfolgen. Während die Immunisierung mit Chitinase und Alum zur deutlichen Bildung von IgG1-Antikörpern und zu einer leichten Erhöhung der Antikörper IgG2a und IgG2b führte, konnte nach Immunisierung mit Chitinase und STP neben Antikörpern der Subklasse IgG1 deutliche erhöhte OD-Werte von IgG2a und IgG2b gemessen werden. In beiden Gruppen reagierten Milzzellen nach Restimulation mit Chitinase, wobei die Proliferationswerte der STP/Chitinase-Gruppe über denen der Alum/Chitinase-Gruppe lagen. Durch den Einsatz von Salmonellen, die Chitinase exprimierten, konnten die T-Zell-Antworten verstärkt werden. Es konnten jedoch keine antigen-spezifischen Antikörper gefunden werden. Mit Hilfe von drei verschiedenen T-Zell-Algorithmen (Algorithmus nach Rothbard und Taylor, nach Humphreys und die MHC-II-Bindungs-Motive nach Rammensee) wurden T-Zell-Epitope innerhalb der OvL3-Chitinase identifiziert. Alle vorhergesagten Epitope wurden als synthetische Peptide hergestellt und in T-Zell-Proliferationstests eingesetzt. Hierzu wurden Milzzellen von Mäusen verwendet, die dreimal mit rekombinanter Chitinase und dem Adjuvans STP immunisiert worden waren. Um möglichst viele T-Zell-Epitope innerhalb der Chitinase zu ermitteln, wurden überlappende Peptide (Pepscan), die die Gesamtheit der Chitinase umfaßten, in T-Zell-Tests eingesetzt. Die verwendeten Algorithmen wurde auf ihre Sensitivität und Spezifität überprüft, indem die vorhergesagten Epitope mit den ermittelten T-Zell-Epitopen des Pepscans verglichen wurden. Dabei konnte der Algorithmus von Rammensee den besten Index an Sensitivität (0,47) und Spezifität (0,7) erzielen. Eine Kombination der Algorithmen ergab, daß die Verknüpfung des Algorithmus nach Rothbard und Taylor mit den MHC-Bindungs-Motiven nach Rammensee die Sensitivität auf 0,67 erhöhen konnte, doch die Spezifität sank durch die hohe Anzahl der vorhergesagten Epitope auf 0,33. Die Anwendung der Algorithmen auf die Sequenz der OvL3-Chitinase führte zu der Identifizierung von fünf Bereichen, die von allen Algorithmen vorhergesagt wurden, und von denen vier in T-Zell-Proliferationstests deutliche Proliferationswerte erzielten. Zusätzlich wurde die OvL3-Chitinase und die OvL3-CBD in Kamerun hinsichtlich ihrer Fähigkeit getestet, PBMC von Onchozerkose-Patienten zu restimulieren, die aus einem hyperendemischen Onchozerkose-Gebiet stammten. Diese Untersuchungen bestätigten die Ergebnisse aus den Immunisierungsstudien mit BALB/c-Mäusen, in denen Chitinase eine TH2-Immunantwort hervorrief. Die PBMC der Onchozerkose-Patienten zeigten nur eine sehr geringe Proliferation nach Stimulation mit OvL3-Chitinase und OvL3-CBD. Begleitet wurde diese Proliferation von Ausschüttung typischer TH2-Zytokine wie IL-10 (Chitinase) bzw. IL-4, IL-5 und IL-10 (CBD). Die Untersuchung der Antikörperantworten der Onchozerkose-Patienten zeigte, daß bei 77% der untersuchten Patienten IgG4-Antikörper gegen die Chitinase und bei 20% gegen die OvL3-CBD im Serum nachgewiesen werden konnten. / Chemotherapeutic treatment of filarial infections has rendered difficult and still insufficient. Therefore, the identification of potentially protective molecules which can be used for vaccine development is desirable. The chitinase of larvae stage three of Onchocerca volvulus constitutes a promising antigen. Immunological characterization of this protein and the identification of immunodominat regions was performed in this study. The complete sequence (OvL3-chitinase) and the C-terminal end responsible for the binding of chitin (OvL3-CBD) were cloned in an expression vector, overexpressed in E. coli and subsequently purified. Recombinant chitinase was enzymatically active. The OvL3-chitinase and the OvL3-CBD were used for immunization studies using the rodent filaria A. viteae in the animal model M. unguiculatus. No decreased number of adult worms was observed after immunization with OvL3-CBD in the present of Alum as adjuvans, while chitinase together with STP resulted in the reduction the worm burden to 40 % (first trial) and to 17,7 % (second trial). Additional immunization studies using BALB/c-mice were performed with OvL3-chitinase in the absence or the presence of two different adjuvans. Spleen cells isolated from mice immunized with chitinase in the absence of adjuvans were devoid of proliferative capacity after in vitro antigenic restimulation. Antigen-specific IgG1 antibodies were the only subtype detectable in sera from mice. These results suggested that a Th2 response was induced after immunization with chitinase under these conditions. Including STP or Alum in the immunization protocol a polarization of the obtained immune response was found. Immunization with chitinase together with Alum elicited strong IgG1 response followed by slightly increase of IgG2a and IgG2b. Co-administration of chitinase and STP evoked increased IgG2a and IgG2b antibodies in addition to the observed IgG1 response. Good proliferative responses were observed for spleen cells from mice immunized with chitinase in the present of both adjuvans after in vitro restimulation with chitinase. Furthermore stronger T-cell reactivity was found in the group immunized with chitinase/STP. Also chitinase was expressed in Salmonella and oral immunization of mice with this construct enforced the T-cell reactivity, however antigen specific antibodies were undetectable. To further characterize T cell reactivity against OvL3-chitinase T cell epitopes using the Rothbard and Taylor algorithm (1988), Humphreys prediction and the MHC-II-binding motifs from Rammmensee (1995) were identified. All predicted epitopes were synthesized and tested in T-cell proliferation assays. Additional synthetic L3-chitinase-derived overlapping peptides were also used in T-cell proliferation assays. The sensitivity and specificity of the algorithms was evaluated by comparing the predicted epitopes with the epitopes determined by overlapping peptides. Using this approach, prediction based on MHC-II-binding motifs showed the highest sensitivity (0,47) and specificity (0,7). A further increase of the predictive power was obtained by a combining MHC-II-binding motifs and Rothbard and Taylor algorithm, resulting in increased sensitivity (0,67) but lower specificity (0,33). Five immunodominant regions were identified by all algorithm and four of them were confirmed as T-cell epitopes in T-cell assays. PBMCs isolated from patients affected with Onchocerca volvulus from Cameroon were also tested for their reactivity against OvL3-chitinase and the OvL3 CBD in T-cell proliferation assays. After in vitro restimulation with OvL3-chitinase and CBD only marginal T-cell response was observed accompanied by release of Th2-like cytokines such as IL-10 when stimulated with chitinase and IL-4, IL-5 and IL-10 when stimulated with CBD. Strong antibody responses of the IgG4 isotype were detected in the serum of 77% of the patients against chitinase and only in 20% of the patients against CBD.

Mit durchflusszytometrischen und molekularbiologischen Verfahren wurden verschiedene Subpopulationen peripherer T-Lymphozyten bei gesunden Spendern und Nierentransplantatempfängern phänotypisch und funktionell untersucht. Wir fanden, dass eine T-Zell-Population, welche unter anderem die Oberflächenmarker LFA-1 und CD57 exprimierte, nicht aber CD28, terminale Effektorzellen enthielt. Wegen der bekannten Assoziation der Expansion CD57-positiver CD8-positiver T-Zellen mit einer Infektion mit dem Zytomegalievirus (CMV), wollten wir untersuchen, ob auch CMV-spezifische Effektorzellen darin enthalten waren. Um diesen möglichen Zusammenhang zwischen Phänotyp und Spezifität zu untersuchen, wurde ein bekanntes durchflusszytometrisches Verfahren zur Erfassung antigen-spezifischer CD4-T-Zellen so modifiziert, dass damit auch antigen-spezifische CD8-T-Zellen erfasst werden konnten. Dazu wurden frisch isolierte periphere mononukleäre Zellen in vitro mit löslichen Peptiden oder Peptidgemischen inkubiert (anstelle von Erregerlysaten oder Proteinantigenen wie im bekannten Verfahren), so dass durch direkte externe Beladung von MHC-I- und MHC-II- Molekülen nicht nur CD4- sondern auch CD8-T-Zellen stimuliert wurden. Anschließend konnten CD4 - und/oder CD8-positive T-Zellen nachgewiesen werden, in welchen es zur Synthese von Interferon-gamma gekommen war (intrazelluläre Färbung), wodurch diese Zellen als antigen-spezifisch identifiziert wurden. Diese Zellen konnten dann weiter phänotypisch analysiert werden. Unter Verwendung bekannter CD8-T-Zellen-stimulierender CMV-Peptide konnte der Phänotyp CMV-spezifischer CD8-T-Zellen untersucht werden, wobei sich zeigte, dass das CD57-positive Subset tatsächlich den gößeren Teil der CMV-spezifischen CD8 T-Zellen enthielt. Andererseits konnte das neue Verfahren verwendet werden, um weitere Peptide zu identifizieren, welche eine T-Zellstimulation bewirkten (Epitopkartierung). In zwei von uns untersuchten Proteinen des CMV (pp65 und IE-1) wurden so mehrere neue CD4- und CD8-T-Zellepitope beschrieben. Die Vewendung komplexer Peptidgemische erlaubte darüber hinaus die Untersuchung der T-Zellantwort gegen ganze Proteine (repräsentiert durch die Gesamtheit aller denkbaren Epitope), was insbesondere für die Untersuchung von CD8-T-Zellen eine große Bereicherung darstellte und vom MHC-Typ unabhängig war. Wir verwendeten dieses neue Verfahren bisher zur Analyse und zum Monitoring der T-Zellantwort gegen bestimmte Erregerproteine oder -peptide (z.B. aus CMV oder HIV). Es eignet sich darüber hinaus auch zur Untersuchung der Immunantwort gegen Impfstoffe, welche zur Induktion von T-Zellen führen sollen. / Using flow-cytometric and molecular-biology methods subpopulations of peripheral blood T-lymphocytes were examined in healthy donors and renal transplant recipients with respect to phenotype and function. We found that a T-cell population that expressed the surface markers LFA-1 and CD57 (among others), but not CD28, contained terminal effector cells. Because of the known association of an expansion of CD57-positive CD8-positive T-cells with an infection with Cytomegalovirus (CMV), we wanted to examine if CMV-specific effector cells were also contained in this subset. In order to investigate this association between phenotype and specificity, we modified a known flow-cytometric method for the detection of antigen-specific CD4 T-cells in such a way that antigen-specific CD8 T-cells could also be detected. For this purpose freshly isolated mononuclear cells were incubated in vitro with soluble peptides or peptide mixes (instead of pathogen lysates or protein antigens as used in the original method) so that following direct external loading of MHC-I and MHC-II molecules not only CD4 T-cells but also CD8-T-cells were stimulated. Subsequently, CD4 and/or CD8 T-cells that had synthesized Interferon-gamma (intracellular staining), which identified them as being antigen-specific, could be detected. These cells could then be analyzed with regard to phenotype. Using known CD8-T-cell stimulating CMV-peptides, the phenotype of CMV-specific CD8 T-cells could be analyzed. Thus it was demonstrated that the majority of CMV-specific CD8 T-cells was indeed contained in the CD57-positive subset. On the other hand, this new approach allowed the identification of additional peptides that stimulated T-cells (epitope mapping). In two CMV-proteins that we examined (pp65 and IE-1) several new CD4 and CD8-T-cell epitopes were described. The use of complex peptide mixes in this approach allowed the analysis of T-cell responses to complete proteins (represented by the entirety of all possible epitopes), which was a great benefit to the analysis of CD8 T-cells and independent of MHC-type. Until now, we have used this new method for the analysis and the monitoring of the T-cell response to specific pathogen proteins or peptides (e.g. from CMV or HIV). It is suitable, moreover, for the analysis of the immune response to vaccinations that aim at the induction of T-cells.

INTRODUÇÃO: As dermatoses bolhosas autoimunes são um grupo heterogêneo de afecções da pele e/ou mucosas associadas à produção de autoanticorpos dirigidos às moléculas de adesão epitelial. Podem ser classificadas em dermatoses bolhosas intraepidérmicas (pênfigos) ou subepidérmicas (penfigóides, epidermólise bolhosa adquirida). Nos últimos anos, a transição entre dermatoses bolhosas autoimunes ou coexistência de autoanticorpos de diferentes dermatoses têm sido relatadas em alguns pacientes e atribuída ao fenômeno de epitope spreading (ES): a diversificação de epítopos reconhecidos pelo sistema imune evocaria uma reação secundária a antígenos distintos e não relacionados aos da doença primária. Neste trabalho avaliamos a ocorrência de fenômenos de ES em pacientes portadores de pênfigo. CASUÍSTICA E MÉTODOS: Inicialmente, foi realizada análise de dados clínicos e laboratoriais (exame histopatológico, de imunofluorescência direta-IFD, indireta IFI e ELISA) de 351 pacientes portadores de pênfigos acompanhados no Ambulatório de dermatoses bolhosas autoimunes do Departamento de Dermatologia da Faculdade de Medicina da Universidade de São Paulo no período de dezembro de 2002 a dezembro de 2012. Foram selecionados pacientes com quadro sugestivo de conversão à dermatose bolhosa distinta da doença primária. RESULTADOS: Nove pacientes apresentaram sinais sugestivos de fenômeno de ES e foram incluídos no estudo: 8 com a conversão de Pênfigo vulgar (PV) a foliáceo (PF) 2,3% (grupo1) e um de PF a Epidermólise bolhosa adquirida (EBA) 0,3% (grupo 2). No grupo 1 o intervalo mediano para a conversão foi de 3,5 anos. Cinco pacientes apresentaram modificação histopatológica de clivagem intraepidérmica na camada suprabasal para clivagem na camada subcórnea durante a suspeita de ES; 2 apresentaram clivagem na camada epidérmica média durante a transição e um manteve clivagem suprabasal, apesar de quadro clínico sugestivo de PF. Todos os pacientes apresentavam depósitos intercelulares de IgG e/ou C3 durante o diagnóstico de PV e PF à IFD. Títulos de IFI variaram de 1:160 a 1:5120. Os valores de ELISA para Dsg1 variaram de 22 a 319; e para Dsg3 de 0.4 a 224 (positivo se > 20). A relação Dsg1/Dsg3 correspondeu à mudança PV-PF. No grupo 2, o ES para EBA ocorreu sete anos após o diagnóstico de inicial de PF. No momento da suspeita de ES o paciente apresentava-se em remissão clínica do quadro de pênfigo folíaceo. A avaliação laboratorial mostrou clivagem subepidérmica neutrofílica, IFD com IgG intercelular intraepidérmica e depósitos de IgM, IgA, IgG e C3 na zona da membrana basal. IFI com técnica de salt split skin revelou depósitos de IgG do lado dérmico. Ao immunobloting houve reconhecimento de colágeno VII e ELISA para Dsg1 foi positivo. CONCLUSÃO: A frequência de ES em pacientes portadores de pênfigo foi de 2,6%. Estudos serão necessários para elucidar a patogênese deste evento e sua importância na progressão dos pênfigos / BACKGROUND: Autoimmune bullous skin diseases represent a heterogeneous group of disorders of skin and mucosa associated with autoantibodies against distinct adhesion molecules. They can be classified, based on the level of loss of adhesion in intraepidermal and sub epidermal dermatosis. The shift from an autoimmune blistering disease to another has been recently described and attributed to the \"epitope spreading\" (ES) phenomena. It occurs when a primary inflammatory/autoimmune process releases \"hidden\" epitopes which are recognized by the lymphocytes and evoke a secondary reaction to antigens distinct from, and non-cross-reactive, with the disease causing-epitope. This study attempted to characterize the occurrence of ES in pemphigus patients. METHODS: We analyzed data from 351 pemphigus patients treated ambulatorially at the Department of Dermatology, Faculty of Medicine, University of São Paulo, from December 2002 to December 2012. A careful search for clinical and laboratorial (histopathology, direct-DIF and indirect-IIF immunofluorescence, ELISA) changes suggestive of shift to a secondary bullous disease was performed. RESULTS: Nine out of 351 patients presented clínical shift and were included in the study: eight from pemphigus vulgaris (PV) to foliaceus (PF) 2.3% (group 1) and one from PF to epidermolysis bullosa acquisita (EBA) 0.3% (group 2). In group 1, median interval of disease shift was 3.5 years. Of 8 patients with clinical PF, five showed change of histopathology pattern from suprabasilar cleavage to subcorneal acantholysis, two had cleavage within the middle epidermal layer, and one sustained the suprabasilar acantholysis. One shifted back to PV after clinical and histopatological changes of PF. All patients showed intercellular IgG and/or C3 deposits during PV and PF diagnosis by DIF. IIF titers varied from 1:160 to 1:5120. ELISA index for Dsg1 varied from 22 to 319; and for Dsg3 from 0.4 to 224 (positive if > 20). Dsg1/Dsg3 indexes corresponded to the clinical PV-PF changes. In group 2, onset of PF occurred at the age of 25, and ES to EBA 7 years later in the absence of PF lesions. Laboratory evaluation showed sub epidermal cleavage with neutrophils, IgG intercellular staining in the epidermis and IgM, IgA, IgG and C3 deposits at BMZ by DIF, IgG deposits by indirect salt-split, recognition of collagen VII by immunoblotting, and positive ELISA for Dsg1. CONCLUSIONS: Intermolecular ES occurred in 2.6% (9/351) of pemphigus patients. Futures studies will be necessary to elucidate the pathogenesis of this event and its significance in pemphigus progression

Introdução: Uma proporção significante de pacientes infectados por HIV-1 (pacientes HIV-1+) tratados com inibidores de protease (IPs) desenvolve mutações de resistência. Estudos recentes têm mostrado que células T CD8+ de pacientes HIV- 1+ reconhecem epitopos de Pol incluindo mutações selecionadas por drogas. Nenhum epitopo CD4+ da protease foi descrito na base de dados de Los Alamos. Objetivo: Considerando que a protease de HIV-1 é alvo de terapia antiretroviral e que essa pressão pode selecionar mutações, nós investigamos se mutações selecionadas por IPs afetariam o reconhecimento de epitopos da protease de HIV-1 por células T CD4+ em pacientes tratados com IPs. Nós investigamos o reconhecimento de três regiões da protease preditas de conter epitopos de células T CD4+ bem como mutações induzidas por IPs por células T CD4+ em pacientes HIV- 1+ tratados com IPs. Materiais e Métodos: Quarenta pacientes HIV-1+ tratados com IPs foram incluídos (30 em uso de Lopinavir/ritonavir, 9 em uso de Atazanavir/Ritonavir e 1 em uso exclusivo de Atazanavir). Para cada paciente determinou-se a seqüência endógena da protease de HIV-1, genotipagem viral e tipagem HLA classe II. Utilizamos o algoritmo TEPITOPE para selecionar peptídeos promíscuos, ligadores de múltiplas moléculas HLA-DR, codificando as três regiões da protease de HIV-1 cepa HXB2 (HXB2 4-23, 45-64, e 76-95) e 32 peptídeos adicionais contidos nas mesmas regiões incorporando as mutações induzidas por IPs mais freqüentes no Brasil. Os 35 peptídeos foram sintetizados. Respostas proliferativas de células T CD4+ e CD8+ aos peptídeos foram determinadas por ensaios de proliferação com diluição do corante CFSE. Ensaios de ligação a alelos HLA classe II foram realizados para confirmar a promiscuidade desses peptídeos e avaliar a habilidade de se ligarem a moléculas HLA presentes em cada paciente. Resultados: Todos os peptídeos foram reconhecidos por pelo menos um paciente e respostas proliferativas de células T CD4+ e CD8+ a pelo menos um peptídeo da protease de HIV-1 foram encontradas em 78% e 75% dos pacientes, respectivamente. A terceira região (Protease 76 95) foi a mais freqüentemente reconhecida. Ao compararmos as respostas de células T às seqüências da protease do HIV-1 endógeno, observamos que a maioria dos pacientes não foi capaz de reconhecer peptídeos idênticos às essas seqüências, porém reconheceram peptídeos variantes diferentes das mesmas regiões. Apenas sete pacientes responderam às seqüências endógenas. Verificamos que diversos peptídeos endógenos que não foram reconhecidos apresentaram ausência de ligação a alelos HLA portados por estes pacientes, sugerindo que mutações selecionadas por pressão imune tenham levado ao escape de apresentação de antígeno e evasão de resposta de linfócitos T CD4+. Alternativamente, isso poderia ser explicado pela presença de um vírus replicante distinto presente no plasma uma vez que somente foram obtidas seqüências provirais. Conclusão: Epitopos selvagens e mutantes da protease do HIV-1 reconhecidos por células T CD4+ foram identificados. Também verificamos que a maior parte dos pacientes não reconheceu as seqüências da protease endógena enquanto que reconheceram seqüências variantes. O reconhecimento de seqüências não-endógenas poderia ser hipoteticamente conseqüência de alvo de populações HIV-1 minoritárias; protease de HERV que contém regiões de similaridade com a protease do HIV-1; ou seqüências de HIV-1 presentes apenas em parceiros virêmicos. A falha de reconhecimento de seqüências endógenas seria mais provável devido ao escape imune, do que ao nível de apresentação ou reconhecimento por células T. Isso implica em uma conseqüência patofisiológica na evasão de respostas de células T contra a protease de HIV-1 e no fato de ser tradicionalmente considerada uma proteína pouco antigênica / Introduction: A significant proportion of protease inhibitor (PI)-treated HIV-1 infected (HIV-1+) patients develop resistance mutations. Recent studies have shown that CD8+ T cells from HIV-1 patients can recognize antiretroviral drug-induced mutant Pol epitopes. No HIV-1 protease CD4 epitopes are described in the Los Alamos database. Aims: Given that the protease of HIV-1 is a target of antiretroviral therapy and this pressure may lead to the selection of mutations, we investigated whether PI-induced mutations affect the recognition of HIV-1 protease epitopes by CD4 + T cells in PI-treated patients. We investigated the recognition of three protease regions predicted to harbor CD4+ T cell epitopes as well as PI-induced mutations by CD4+ T cells of PI-treated HIV-1+ patients. Methods: Forty PI-treated HIV-1+ patients were included (30 undergoing Lopinavir/ritonavir, 9 undergoing Atazanavir/ritonavir and 1 undergoing exclusively Atazanavir treatment). For each patients, the endogenous HIV-1 protease sequence, viral genotype and HLA class II typing were determined. We used the TEPITOPE algorithm to select promiscuous, multiple HLA-DR-binding peptides encoding 3 regions of HIV-1 HXB2 strain protease (HXB2 4-23, 45-64, and 76-95) and 32 additional peptides contained in the same regions, but encompassing the most frequent PI-induced mutations in Brazil. The 35 peptides were thus synthesized. Proliferative responses of CD4+ and CD8+ T cells against peptides were determined by the CFSE dilution assay. HLA class II binding assays were made to confirm the promiscuity of these peptides and evaluate their ability to bind the HLA molecules carried by each patient. Results: All tested peptides were recognized by at least one patient and proliferative responses of CD4+ and CD8+ T cells against at least one HIV-1 protease peptide were found in 78% and 75% patients, respectively. The third region (Protease 76-95) was the most frequently recognized. By comparing T-cell responses to HIV-1 endogenous protease sequences, we found that most patients failed to recognize identical peptides of those sequences, but recognized different variant peptides of the same region. Only seven patients responded to endogenous sequences. We found that several endogenous peptides that failed to be recognized showed no binding to the HLA alleles carried by that given patient, suggesting that mutations selected by immune pressure have led to escape of antigen presentation, as well as direct escape of the CD4+ T cell response. Alternatively, it could have been due to the presence of a different replicating virus in the plasma-since we only obtained proviral sequences. Conclusion: Wild-type and mutant HIV-1 protease epitopes recognized by CD4+ T cells were identified. We also found that most patients failed to recognize their endogenous protease sequences, while they recognized variant sequences. The recognition of non-endogenous sequences could hypothetically be a consequence of targeting a minor HIV-1 population; HERV protease, that contains regions of similarity with HIV-1 protease; or HIV-1 sequences present only in viremic partners. The failure to recognize endogenous sequences is most likely due to immune escape, either at the level of presentation or direct T cell recognition. This may have a pathophysiological consequence on evasion of T cell responses against protease and the fact that it has been considered traditionally a poorly antigenic HIV-1 protein.

<p>The human coronavirus NL63 was discovered in 2004 by a team of researchers in Amsterdam. Since its discovery it has been shown to have worldwide spread and affects mainly children, aged 0-5 years old, the immunocompromised and the elderly. Infection with HCoV-NL63 commonly results in mild upper respiratory tract infections and presents as the common cold, with symptoms including fever, cough, sore throat and rhinorrhoea. Lower respiratory tract findings are less common but may develop into more serious complications including bronchiolitis, pneumonia and croup. The primary function of the HCoV-NL63 nucleocapsid (N) protein is the formation of theprotective ribonucleocapsid core. For this particle to assemble, the N-protein undergoes N-N dimerization and then interacts with viral RNA. Besides the primary structural role of the Nprotein, it is also understood to be involved in viral RNA transcription, translation and replication, including several other physiological functions. The N-protein is also highly antigenic and elicits a strong immune response in infected patients. For this reason the N-protein may serve as a target for the development of diagnostic assays. We have used bioinformatic analysis to analyze the HCoV-NL63 N-protein and compared it to coronavirus N-homologues. This bioinformatic analysis provided the data to generate recombinant clones for expression in a bacterial system. We constructed recombinant clones of the N-protein of SARS-CoV and HCoV-NL63 and synthesized truncated clones corresponding to the N- and C-terminal of the HCoV-NL63 N-protein. These heterologously expressed proteins will serve the basis for several post-expression studies including characterizing the immunogenic epitope of the N-protein as well identifying any antibody crossreactivity between coronavirus species.</p>

Introduction: Les cadres de lectures alternatifs (CLA) sont utilisés par de multiples virus afin de générer plusieurs protéines à partir d'une seule séquence nucléotidique. Les épitopes dits « cryptiques », c’est-à-dire les épitopes dérivés de protéines codées dans des CLAs, ont étés dernièrement l’objet de différentes études portant sur la réponse immunitaire antivirale et les lymphocytes T cytotoxiques. Méthodologie: Afin de vérifier le potentiel immunogène d'épitopes encodés dans des CLAs programmés, trois cassettes ont été construites pour mener à l'expression de trois épitopes bien caractérisés (épitope GAG77–85 du virus de l'immunodéficience humaine de type 1; épitope NS31406-1415 du virus de l'hépatite C; épitope core18-27 du virus de l'hépatite B) à partir de trois cadres de lectures superposés. La première cassette permet une initiation alternative de la traduction, la deuxième comprend deux signaux bipartites en tandem permettant un frameshift ribosomique et la troisième est une cassette contrôle. Ces éléments ont été introduits dans des vecteurs adénoviraux. Les virions générés ont servi à immuniser des souris C57BL/6 transgéniques pour HLA-A*0201 et HLA-DR1. La réponse immunitaire induite une semaine post-immunisation a été mesurée par essai ELISpot IFN . Résultats: Dans le contexte de cassettes vaccinales, les peptides dérivés d'une initiation alternative de traduction et de changement de cadre de lecture ribosomique ribosomal peuvent être exprimés et détectés par le système immunitaire dans un modèle animal. Conclusion: Ces expériences suggèrent la possibilité de développer de nouvelles stratégies vaccinales dans le but de prévenir ou de guérir certaines maladies associées aux infections virales chroniques telles que celles causées par le virus de l’immunodéficience humaine et le virus de l’hépatite C. / Introduction: Alternative reading frames (ARFs) are used by multiple viruses in order to generate different proteins from a single nucleotide sequence. Cryptic epitopes, which comprise antigens derived from proteins encoded in ARFs, have recently been the focus of studies pertaining to antiviral immunity and cytotoxic T lymphocytes. Methodology: In order to verify the immunological potential of epitopes encoded in programmed ARFs, three cassettes were constructed to permit the expression of three welldescribed epitopes (GAG77–85 epitope of human immunodeficiency virus type 1; NS31406-1415 epitope of hepatitis C virus; core18-27 epitope of hepatitis B virus) from three overlapping reading frames. The first cassette permits alternative translation initiation, the second cassette includes signals inducing ribosomal frameshifting and the third cassette serves as a control. These elements were introduced into adenoviral vectors. Recombinant adenoviruses were used to immunize C57BL/6 transgenic mice expressing HLA-A*0201 and HLA-DR1. The immune response induced was measured one week following immunization using IFN ELISpot assays. Results: In the context of vaccine cassettes, peptides derived from alternative translation initiation and ribosomal frameshifting can be expressed and detected by the immune system in an animal model. Conclusion: These findings suggest the possibility of designing vaccination strategies in the hope of preventing or curing certain diseases associated with chronic viral infections, such as those caused by human immunodeficiency virus and hepatitis C virus.

L’interféron-α pegylé en combinaison avec la ribavirin est le seul traitement approuvé pour le traitement de l’infection au virus de l’hépatite C (VHC). L’efficacité est de 50-75%, la thérapie est coûteuse et induit beaucoup d’effets secondaires. Il est impératif d’avoir une meilleure compréhension de la pathogenèse du VHC afin de développer des traitements plus efficaces ou un vaccin. À cette fin, notre approche est de caractériser la réponse immunitaire cellulaire induite par ARFP, un antigène nouveau et conservé chez le VHC, et de cartographier les épitopes de la réponse immunitaire cellulaire d’un patient infecté au génotype 3a ayant résolu spontanément. Le génotype 3a, étant prévalant chez les utilisateurs de drogues intraveineuses (IDUs) constitue 60% des nouvelles infections. Peu d’épitopes furent identifiés auparavant pour ce génotype, ce qui rend l’étude de la réponse immunitaire difficile chez cette population. Dans cette étude, pour la réponse immunitaire cellulaire dirigée contre ARFP, nous n’avons pas observé de différence significative entre les patients ayant résolu spontanément comparativement avec ceux ayant développé une infection persistante. Ceci suggère fortement que ARFP ne joue pas un rôle majeur lors de la résolution de l’infection aigue au VHC. Pour la caractérisation de la réponse immunitaire cellulaire chez un des patients infectés au génotype 3a, nous avons identifié et caractérisé 5 épitopes spécifiquement reconnus par des lymphocytes T, CD3+, CD4+ et CD8- : E2504-521, NS31064-1081, NS4b1759-1776, NS5a2074-2091, NS5b2421-2436. Nous avons comparé avec ceux connus pour le génotype 1a. Nous avons identifié 4 nouveaux épitopes. Enfin, l’épitope NS4b1759-1776, identifié auparavant, pourrait s’avérer être un candidat intéressant dans la mise au point d’un vaccin à base de peptides immunogéniques contre le VHC. / Interferon-α combined with ribavirin is the only approved treatment of hepatitis c virus (HCV) infection. The efficiency is between 50-75%, the therapy is expensive and has numerous side-effects. It is imperative to have a better understanding of HCV pathogenesis to develop better treatments or a vaccine. To this end, our approach is to characterize the immune cellular response against ARFP, a newly identified and conserved antigen of HCV; and to characterize and fine map cellular immune response of a patient infected with genotype 3a that spontanously resolved. Genotype 3a is most prevelant in intravenous drug users (IDUs) where nearly 60% of all new HCV infections happen. Very few epitopes are known for genotype 3a which makes it difficult to study HCV-specific immune responses in this population. In this study, for ARFP specific cellular responses, we observed no significant difference between patients that spontanously resolved compared to those who developped persistent infection. This strongly suggests that ARFP does not play a major role in acute HCV infection resolution. For the charaterization of immune cellular response developped against genotype 3a, we identified and characterized 5 epitopes recognized by lymphocytes T, CD3+, CD4+, CD8-: E2504-521, NS31064-1081, NS4B1759-1776, NS5A2074-2091, NS5B2421-2436. We compared them with epitopes known for genotype 1a. We have identified 4 novel epitopes. Finally, NS4B1759-1776, previously identified, could be a good candidate in the developement of a peptide based vaccine against HCV.