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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
481

Sentiment-Driven Topic Analysis Of Song Lyrics

Sharma, Govind 08 1900 (has links) (PDF)
Sentiment Analysis is an area of Computer Science that deals with the impact a document makes on a user. The very field is further sub-divided into Opinion Mining and Emotion Analysis, the latter of which is the basis for the present work. Work on songs is aimed at building affective interactive applications such as music recommendation engines. Using song lyrics, we are interested in both supervised and unsupervised analyses, each of which has its own pros and cons. For an unsupervised analysis (clustering), we use a standard probabilistic topic model called Latent Dirichlet Allocation (LDA). It mines topics from songs, which are nothing but probability distributions over the vocabulary of words. Some of the topics seem sentiment-based, motivating us to continue with this approach. We evaluate our clusters using a gold dataset collected from an apt website and get positive results. This approach would be useful in the absence of a supervisor dataset. In another part of our work, we argue the inescapable existence of supervision in terms of having to manually analyse the topics returned. Further, we have also used explicit supervision in terms of a training dataset for a classifier to learn sentiment specific classes. This analysis helps reduce dimensionality and improve classification accuracy. We get excellent dimensionality reduction using Support Vector Machines (SVM) for feature selection. For re-classification, we use the Naive Bayes Classifier (NBC) and SVM, both of which perform well. We also use Non-negative Matrix Factorization (NMF) for classification, but observe that the results coincide with those of NBC, with no exceptions. This drives us towards establishing a theoretical equivalence between the two.
482

Cluster-Based Analysis Of Retinitis Pigmentosa Candidate Modifiers Using Drosophila Eye Size And Gene Expression Data

James Michael Amstutz (10725786) 01 June 2021 (has links)
<p>The goal of this thesis is to algorithmically identify candidate modifiers for <i>retinitis pigmentosa</i> (RP) to help improve therapy and predictions for this genetic disorder that may lead to a complete loss of vision. A current research by (Chow et al., 2016) focused on the genetic contributors to RP by trying to recognize a correlation between genetic modifiers and phenotypic variation in female <i>Drosophila melanogaster</i>, or fruit flies. In comparison to the genome-wide association analysis carried out in Chow et al.’s research, this study proposes using a K-Means clustering algorithm on RNA expression data to better understand which genes best exhibit characteristics of the RP degenerative model. Validating this algorithm’s effectiveness in identifying suspected genes takes priority over their classification.</p><p>This study investigates the linear relationship between <i>Drosophila </i>eye size and genetic expression to gather statistically significant, strongly correlated genes from the clusters with abnormally high or low eye sizes. The clustering algorithm is implemented in the R scripting language, and supplemental information details the steps of this computational process. Running the mean eye size and genetic expression data of 18,140 female <i>Drosophila</i> genes and 171 strains through the proposed algorithm in its four variations helped identify 140 suspected candidate modifiers for retinal degeneration. Although none of the top candidate genes found in this study matched Chow’s candidates, they were all statistically significant and strongly correlated, with several showing links to RP. These results may continue to improve as more of the 140 suspected genes are annotated using identical or comparative approaches.</p>
483

The effect of hypoxia on ER-β expression in the lung and cultured pulmonary artery endothelial cells

Selej, Mona M.A. 12 March 2014 (has links)
Indiana University-Purdue University Indianapolis (IUPUI) / 17-β estradiol (E2) exerts protective effects in hypoxia-induced pulmonary hypertension (HPH) via endothelial cell estrogen receptor (ER)-dependent mechanisms. However, the effects of hypoxia on ER expression in the pulmonary-right ventricle (RV) axis remain unknown. Based on previous data suggesting a role of ER-β in mediating E2 protection, we hypothesized that hypoxia selectively up-regulates ER-β in the lung and pulmonary endothelial cells. In our Male Sprague-Dawley rat model, chronic hypoxia exposure (10% FiO2) resulted in a robust HPH phenotype associated with significant increases in ER- β but not ER-α protein in the lung via western blotting. More importantly, this hypoxia-induced ER-β increase was not replicated in the RV, left ventricle (LV) or in the liver. Hence, hypoxia-induced ER-β up-regulation appears to be lung-specific. Ex vivo, hypoxia exposure time-dependently up-regulated ER-β but not ER-α in cultured primary rat pulmonary artery endothelial cells (RPAECs) exposed to hypoxia (1% O2) for 4, 24 or 72h. Furthermore, the hypoxia induced ER-β protein abundance, while not accompanied by increases in its own transcript, was associated with ER-β nuclear translocation, suggesting increase in activity as well as post-transcriptional up-regulation of ER-β. Indeed, the requirement for ER-β activation was indicated in hypoxic ER-βKO mice where administration of E2 failed to inhibit hypoxia-induced pro-proliferative ERK1/2 signaling. Interestingly, HIF-1α accumulation was noted in lung tissue of hypoxic ER-βKO mice; consistent with previously reported negative feedback of ER-β on HIF-1α protein and transcriptional activation. In RAPECs, HIF-1 stabilization and overexpression did not replicate the effects of ER- β up-regulation seen in gas hypoxia; suggestive that HIF-1α is not sufficient for ER-β up- regulation. Similarly, HIF-1 inhibition with chetomin did not result in ER-β down-regulation. HIF-1α knockdown in RPAECs in hypoxic conditions is currently being investigated. Hypoxia increases ER- β, but not ER-α in the lung and lung vascular cells. Interpreted in context of beneficial effects of E2 on hypoxic PA and RV remodeling, our data suggest a protective role for ER-β in HPH. The mechanisms by which hypoxia increases ER-β appears to be post-transcriptional and HIF-1α independent. Elucidating hypoxia-related ER-β signaling pathways in PAECs may reveal novel therapeutic targets in HPH.
484

Mechanisms of translational regulation in the pancreatic β cell stress response

Templin, Andrew Thomas January 2014 (has links)
Indiana University-Purdue University Indianapolis (IUPUI) / The islet beta cell is unique in its ability to synthesize and secrete insulin for use in the body. A number of factors including proinflammatory cytokines, free fatty acids, and islet amyloid are known to cause beta cell stress. These factors lead to lipotoxic, inflammatory, and ER stress in the beta cell, contributing to beta cell dysfunction and death, and diabetes. While transcriptional responses to beta cell stress are well appreciated, relatively little is known regarding translational responses in the stressed beta cell. To study translation, I established conditions in vitro with MIN6 cells and mouse islets that mimicked UPR conditions seen in diabetes. Cell extracts were then subjected to polyribosome profiling to monitor changes to mRNA occupancy by ribosomes. Chronic exposure of beta cells to proinflammatory cytokines (IL-1 beta, TNF-alpha, IFN-gamma), or to the saturated free fatty acid palmitate, led to changes in global beta cell translation consistent with attenuation of translation initiation, which is a hallmark of ER stress. In addition to changes in global translation, I observed transcript specific regulation of ribosomal occupancy in beta cells. Similar to other privileged mRNAs (Atf4, Chop), Pdx1 mRNA remained partitioned in actively translating polyribosomes during the UPR, whereas the mRNA encoding a proinsulin processing enzyme (Cpe) partitioned into inactively translating monoribosomes. Bicistronic luciferase reporter analyses revealed that the distal portion of the 5’ untranslated region of mouse Pdx1 (between bp –105 to –280) contained elements that promoted translation under both normal and UPR conditions. In contrast to regulation of translation initiation, deoxyhypusine synthase (DHS) and eukaryotic translation initiation factor 5A (eIF5A) are required for efficient translation elongation of specific stress relevant messages in the beta cell including Nos2. Further, p38 signaling appears to promote translational elongation via DHS in the islet beta cell. Together, these data represent new insights into stress induced translational regulation in the beta cell. Mechanisms of differential mRNA translation in response to beta cell stress may play a key role in maintenance of islet beta cell function in the setting of diabetes.
485

Novel Roles of p21 in Apoptosis During Beta-Cell Stress in Diabetes

Hernández-Carretero, Angelina M. January 2014 (has links)
Indiana University-Purdue University Indianapolis (IUPUI) / Type 2 diabetes manifests from peripheral insulin resistance and a loss of functional beta cell mass due to decreased beta cell function, survival, and/or proliferation. Beta cell stressors impair each of these factors by activating stress response mechanisms, including endoplasmic reticulum (ER) stress. The glucolipotoxic environment of the diabetic milieu also activates a stress response in beta cells, resulting in death and decreased survival. Whereas the cell cycle machinery (comprised of cyclins, kinases, and inhibitors) regulates proliferation, its involvement during beta cell stress in the development of diabetes is not well understood. Interestingly, in a screen of multiple cell cycle inhibitors, p21 was dramatically upregulated in INS-1-derived 832/13 cells and rodent islets by two independent pharmacologic inducers of beta cell stress - dexamethasone and thapsigargin. In addition, glucolipotoxic stress mimicking the diabetic milieu also induced p21. To further investigate p21’s role in the beta cell, p21 was adenovirally overexpressed in 832/13 cells and rat islets. As expected given p21’s role as a cell cycle inhibitor, p21 overexpression decreased [3H]-thymidine incorporation and blocked the G1/S and G2/M transitions as quantified by flow cytometry. Interestingly, p21 overexpression activated apoptosis, demonstrated by increased annexin- and propidium iodide-double-positive cells and cleaved caspase-3 protein. p21-mediated caspase-3 cleavage was inhibited by either overexpression of the anti-apoptotic mitochondrial protein Bcl-2 or siRNA-mediated suppression of the pro-apoptotic proteins Bax and Bak. Therefore, the intrinsic apoptotic pathway is central for p21-mediated cell death. Like glucolipotoxicity, p21 overexpression inhibited the insulin cell survival signaling pathway while also impairing glucose-stimulated insulin secretion, an index of beta cell function. Under both conditions, phosphorylation of insulin receptor substrate-1, Akt, and Forkhead box protein-O1 was reduced. p21 overexpression increased Bim and c-Jun N-terminal Kinase, however, siRNA-mediated reduction or inhibition of either protein, respectively, did not alter p21-mediated cell death. Importantly, islets of p21-knockout mice treated with the ER stress inducer thapsigargin displayed a blunted apoptotic response. In summary, our findings indicate that p21 decreases proliferation, activates apoptosis, and impairs beta cell function, thus being a potential target to inhibit for the protection of functional beta cell mass.
486

Analýza a návrh informačního systému s využitím metodiky RUP / Analysis and Design of Information System Using Methodology RUP

Seman, Ondřej January 2007 (has links)
IBM Rational Unified Process is a robust iterative software development methodology. The main goal of master´s thesis is to describe the aspects of this methodology and to analyze and design a fictional information system within the scope of "inception" and "elaboration" phase.
487

Microspore embryogenesis: cell wall dynamics and reprogramming of cell fate

Camacho Fernández, Carolina 08 March 2021 (has links)
[ES] Los dobles haploides son una gran herramienta para la mejora genética de híbridos debido a que se puede alcanzar la homocigosis completa en una sola generación. Entre las técnicas usadas para obtener estas plantas, la inducción de la embriogénesis de microsporas, mediante el cultivo de anteras o de microsporas, es la más eficiente y la más usada. La embriogénesis de microsporas es también un ejemplo de totipotencia de las células vegetales gracias a su habilidad de reprogramar su desarrollo gametofítico hacia una ruta esporofítica, donde las células proliferan de forma organizada para crear un nuevo organismo. Como en muchos otros procesos in vitro, las condiciones de cultivo deben ser optimizadas para incrementar la eficiencia. En la presente Tesis Doctoral, hemos usado dos especies como sistemas experimentales para estudiar y optimizar el cultivo de microsporas. Por un lado, usamos berenjena (Solanum melongena) como un ejemplo de cultivo de importancia económica en el que los protocolos todavía tienen mucho margen de mejora. La optimización de la densidad celular y los reguladores de crecimiento han demostrado ser útiles para modificar la eficiencia del cultivo de microsporas de berenjena. Por otra parte, hemos utilizado el cultivo de microsporas de Brassica napus para estudios básicos puesto que ha sido ampliamente usado como modelo para entender procesos celulares que ocurren durante este cambio en el desarrollo. Se detalla un protocolo estandarizado para el cultivo de microsporas de B. napus, el cual ha sido utilizado en todos los cultivos en esta Tesis para explorar una serie de procesos y estructuras celulares potencialmente implicados en el cambio de desarrollo hacia embriogénesis. Estos procesos incluyen estrés del retículo endoplásmico, muerte celular programada, autofagia y estructura y composición de la pared celular. Estudiamos en paralelo el cultivo de microsporas de dos genotipos de B. napus con diferente respuesta androgénica en condiciones estándar y añadiendo Tricostatina A, un modulador epigenético que ha mostrado ser beneficioso para la respuesta androgénica en algunos casos. En conjunto, esta Tesis representa un avance en la optimización del cultivo de microsporas en estas especies y arroja luz sobre el papel de algunos procesos en el contexto de embriogénesis de microsporas. / [CA] Els dobles haploides són una gran eina en millora vegetal per a la producció d'híbrids, a causa de la seua total homozigosi, que es pot aconseguir en només una generació in vitro. Entre les diverses tècniques que s'utilitzen per tal d'obtenir aquestes plantes, la inducció de l'embriogènesi de microspores, mitjançant cultiu d'anteres o microspores, és la més comuna i eficient. L'embriogènesi de microspores també és un exemple de la totipotència de les cèl·lules vegetals, capaços de reprogramar-se d'una via gametofítica a una via esporofítica, on proliferen de manera organitzada per crear un nou organisme. Com en moltes altres tecniques in vitro, s'han d'optimitzar les condicions del cultiu per tal d'augmentar l'eficiència. En la present Tesi Doctoral, hem utilitzat dues espècies de plantes com a sistemes experimentals per estudiar i optimitzar el cultiu de microspores. Per una banda, hem utilitzat l'albergínia (Solanum melongena) com a exemple de cultiu d'importància econòmica on els protocols encara tenen marge per a l'optimització. La optimització de la densitat de cèl·lules en cultiu i la concentració de reguladors de creixement van demostrar ser útils per modificar l'eficiència de la resposta dels cultius de microspores d'albergínia. D'altra banda, hem utilitzat cultius de microspores de Brassica napus principalment per a estudis bàsics, ja que s'utilitza àmpliament com a model per entendre els processos cel·lulars que es produeixen durant aquest canvi de desenvolupament. Es detalla un protocol estandarditzat per al cultiu de microspores de B. napus, que s'ha utilitzat en tots els cultius inclosos en aquesta Tesi per explorar una sèrie de processos i estructures cel·lulars potencialment implicades en el canvi de desenvolupament cap a l'embriogènesi. Aquests inclouen l'estrès del reticle endoplasmàtic, la mort cel·lular programada, l'autofàgia i l'estructura i composició de la paret cel·lular. Vam estudiar en paral·lel cultius de microspores de dos genotips de B. napus amb diferent resposta androgènica, cultivats en condicions estàndard i afegint-hi Tricostatina A, un modulador epigenètic que s¿ha demostrat beneficiós per a la resposta androgènica en alguns casos. En conjunt, aquesta Tesi representa un avanç en l'optimització dels cultius de microsporas en aquestes espècies i aporta llum sobre el paper d'alguns processos en el context de l'embriogènesi de microspores. / [EN] Doubled haploids are a great tool for hybrid breeding due to their complete homozygosity achievable in only one in vitro generation. Among the several techniques used to obtain these plants, induction of microspore embryogenesis, via anther or microspore culture, is the most common and efficient approach. Microspore embryogenesis is also an example of totipotency of plant cells due to their ability to reprogram themselves from a gametophytic to a sporophytic pathway, where cells proliferate in an organized way to create a new organism. As in many other in vitro procedures, culture conditions must be optimized in order to increase efficiency. In the present Doctoral Thesis, we used two plant species as experimental systems to study and optimize microspore culture. On one hand, we used eggplant (Solanum melongena) as an example of economically important crop where protocols have still room for optimization. Optimization of cell density and growth regulators demonstrated to be useful to modify the efficiency of eggplant microspore cultures. On the other hand, we used B. napus microspore cultures principally for basic studies since it is widely used as a model to understand cellular processes occurring during this developmental switch. A standardized protocol for Brassica napus microspore culture is detailed, which was used in all the cultures included in this Thesis to explore a series of processes and cellular structures potentially involved in the developmental switch towards embryogenesis. These included endoplasmic reticulum stress, programmed cell death, autophagy, and cell wall structure and composition. We studied in parallel microspore cultures from two B. napus genotypes with different androgenic response cultured in standard conditions and adding Trichostatin A, a epigenetic modulator shown to be beneficial for the androgenic response in some cases. Together, this Thesis represents an advance in the optimization of microspore cultures in these species, and sheds light on the role of some processes within the context of microspore embryogenesis. / Thanks are due to the Electron Microscopy Service of Universitat Politècnica de València, Marisol Gascón (IBMCP Microscopy Service). This work was supported by grant AGL2017-88135-R to JMSS from MICINN jointly funded by FEDER and by a Marie Skłodowska-Curie Individual Fellowship (656579) to PC-M This work was supported by grant AGL2017-88135-R to JMSS from MINECO jointly funded by FEDER. / Camacho Fernández, C. (2021). Microspore embryogenesis: cell wall dynamics and reprogramming of cell fate [Tesis doctoral]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/163698
488

L1 transfer effects in L2 grammatical gender processing of late bilinguals

Renner, Anna 07 May 2014 (has links)
Diese Dissertation untersucht Transfereffekte aus der Muttersprache (L1) in der Verarbeitung von grammatischem Genus in der Zweitsprache (L2) bei Spätbilingualen. „Spätbilinguale“ lernen eine Zweitsprache nach der Kindheit, im Gegensatz zu „Frühbilingualen“. Forschungsergebnisse zeigten, dass der L2-Erwerb nach der Kindheit weniger erfolgreich ist als während der Kindheit und dass einige Strukturen, wie z.B. grammatisches Genus, besonders stark von Alterseffekten beeinträchtigt sind. Eine Erklärung für L2-Verarbeitungsschwierigkeiten ist negativer L1-Transfer. Deshalb konzentriert sich diese Dissertation auf L1-Transfereffekte in der Genusverarbeitung. Transfer tritt auf, weil alle Sprachen eines Sprechers aktiviert sind und im Wettbewerb um Selektion stehen. Ein Ziel dieser Dissertation ist, zu beschreiben, welche Faktoren Genustransfer beeinflussen. Für die L2-Genusverarbeitung wurde gezeigt, dass verschiedene Faktoren die Leistung beeinflussen, z.B. die L2-Kompetenz der Probanden, Aufgabenanforderungen und die syntaktische Distanz der übereinstimmenden Elemente. Genustransfer wird durch Faktoren wie Charakteristiken des L1-Genussystems, Transparenz des L2-Genussystems und Formähnlichkeit der Nomen in L1 und L2 beeinflusst. Außerdem könnte Genustransfer von der L2-Kompetenz und der Komplexität des L2-Genussystems abhängen. Es wurden ein behaviorales und ein EKP-Experiment durchgeführt. Genustransfer wurde über verschiedene Sprachpaare mit Genussystemen von unterschiedlicher Komplexität und Transparenz hinweg untersucht. Die experimentellen Aufgaben unterschieden sich bezüglich der Aufgabenanforderungen und syntaktische Strukturen mit unterschiedlicher struktureller Distanz wurden verwendet. Der Leistungsstand der Probanden wurde manipuliert. Anhand meiner Ergebnisse konnte ich identifizieren, welche (Kombination von) Faktoren Genustransfer erhöhen oder verringern und Genustransfer als das Ergebnis eines komplexen Wechselspiels von Faktoren beschreiben. / This thesis investigates first language (L1) transfer effects in second language (L2) grammatical gender processing of late bilinguals. “Late bilinguals” learn an L2 after childhood, in contrast to “early bilinguals”. Research has shown that L2 acquisition after childhood is usually less successful than during childhood and that some aspects of a language are more affected by age than others. One of the structures especially affected is grammatical gender. A possible explanation for L2 processing difficulties in late bilinguals is negative transfer from the L1. Therefore, this thesis focuses on L1 transfer effects in L2 gender processing of late bilinguals. Transfer arises because all languages of a speaker are activated and compete for selection. One aim of this thesis is to describe which (combination of) factors influence L1 gender transfer. Regarding L2 gender processing in general, different factors have been shown to affect performance, e.g., language proficiency of the subjects, task demands, and syntactic distance of the agreeing elements. Gender transfer is affected by factors such as characteristics of the L1 gender system, transparency of the L2 gender system, and form similarities of nouns in L1 and L2 (cognates vs. noncognates). Besides this, gender transfer might be mediated by L2 proficiency and the complexity of the L2 gender system. In this thesis, a behavioral and an ERP experiment were conducted. Gender transfer was investigated across different language pairs with gender systems of varying complexity and transparency. Experimental tasks differed in task demands and syntactic structures with varying agreement distances were used. Language proficiency of subjects was also manipulated. Based on my findings, I was able to identify which factors and which combination of factors increase or decrease gender transfer and to describe gender transfer as the result of a complex interplay of a combination of various factors.
489

Prinzipien kohärenter Kommunikation

Grommes, Patrick 04 May 2007 (has links)
Die Dissertation zeigt, dass die Prinzipien kohärenter Kommunikation auf psycholinguistisch begründete Prinzipien der Textproduktion zurückzuführen sind. Die gemeinsame Basis von Text- und Dialogproduktion ist die Quaestio, die als leitende Frage Vorgaben für den Aufbau eines Textes, aber auch einer einzelnen Äußerung macht. Im Text sichert die Quaestio Kohärenz, indem die Textbausteine auf der konzeptuellen Ebene – und nicht allein durch lexikalische oder grammatische Mittel – verknüpft werden. Das bedeutet, dass Kohärenzherstellung eine kognitive Leistung ist, die nicht allein rezeptiv zu erbringen ist, sondern auch bei der Sprachproduktion die Beachtung von Planungsvorgaben verlangt. Zunächst werden die Begriffe Kohärenz und Kohäsion und verschiedene Ansätze zu ihrer Beschreibung diskutiert. Außerdem werden Methoden der Dialoganalyse einander gegenüber gestellt. In dieser Diskussion werden unter anderem Rhetorical Structure Theory und Centering-Theorie behandelt. Da die Arbeit eher strukturelle mit qualitativen Analysen verbindet, werden methodische Zugänge zur Dialoganalyse wie die Konversationsanalyse, aber auch Clark’s sozialpsychologischer Ansatz der joint actions und joint activities sowie Pickering’s und Garrod’s alignment-Theorie aufgegriffen. Letztlich wird auf das Quaestio-Modell von Stutterheim zurückgegriffen, da es aus psycholinguistischer Perspektive den weitesten Erklärungsrahmen bietet. Der Hauptteil der Dissertation ist der Modell-Entwicklung anhand authentischer Gesprächsdaten gewidmet. Schließlich werden Prinzipien der Quaestio-Bearbeitung im Dialog entwickelt. Da unterschiedliche Gesprächssituationen untersucht werden, liefert diese Arbeit ein Inventar an Kohärenzprinzipien samt ihrer charakteristischen Merkmale, das nicht nur die Analyse beliebiger weiterer Gespräche erlaubt, sondern beispielsweise auch zur Entwicklung von Kommunikationsroutinen eingesetzt werden kann. So werden Anwendungsperspektiven psycholinguistischer Forschung erkennbar. / This doctoral thesis shows in how far principles of coherent communication can be traced back to psycholinguistically founded principles of text production. The so-called quaestio forms the common basis of text and dialogue production. As an implicit underlying question it sets preferences for the structure of a whole text as well as a single utterance. The quaestio ensures coherence of texts on a conceptual basis rather than merely through the use of lexical or grammatical means. Thus, the production of coherence can be seen as cognitive achievement not only by listeners, but also by speakers who have to follow planning constraints. The thesis discusses the terms coherence and cohesion as well as descriptive approaches dealing with these terms. Additionally, methods of dialogue analysis are confronted with each other. This discussion treats for example Rhetorical Structure Theory and Centering-Theory. The thesis discusses diverse methodological approaches, because it combines structural with qualitative analyses. Thus approaches such as Conversation Analysis, Clark’s concept of joint actions and joint activities, but also Pickering’s and Garrod’s alignment-theory are being treated. In the end the quaestio approach by Stutterheim is chosen, because it offers the widest explanatory framework from a psycholinguistic point of view. The main part of the thesis is dedicated to detailed analyses of real-life dialogue. In conclusion, principles of quaestio management in dialogues are proposed. Because the study treats a wide variety of interaction settings, it delivers a set of principles of coherence and their typical features that allows not only for analyses of any other set of dialogues, but may also support the development of communication routines. Therefore, this thesis hints on application scenarios of psycholinguistic research.
490

Identification de nouveaux partenaires protéiques des récepteurs couplés aux protéines G contrôlant leur transport du reticulum endoplasmique à la membrane plasmique

Sauvageau, Etienne 07 1900 (has links)
Les récepteurs couplés aux protéines G (RCPGs) forment la plus grande et la plus diversifiée des familles de protéines localisées à la surface cellulaire et responsables de la transmission de signaux à l’intérieur des cellules. D’intenses recherches effectuées au cours des trente dernières années ont mené à l’identification de dizaines de protéines interagissant avec les RCPGs et contrôlant la signalisation, la désensibilisation, l’internalisation et la dégradation de ces importantes cibles pharmacologiques. Contrairement aux processus régulant l’activité des récepteurs à partir de la membrane plasmique, les mécanismes moléculaires contrôlant la biosynthèse des RCPGs dans le reticulum endoplasmique (RE) et leur transport jusqu’à la surface cellulaire sont très peu caractérisés. Une meilleure compréhension de ces processus nécessite l’identification de la machinerie protéique responsable de la maturation des RCPGs. Un crible protéomique basé sur le transfert d’énergie de résonance de bioluminescence (BRET), qui permet la mesure d’interactions protéiques dans les cellules vivantes, a mené à l’identification de plusieurs nouvelles protéines localisées dans la voie de sécrétion et interagissant potentiellement avec les RCPGs. Ces protéines étant localisées dans les compartiments cellulaires (reticulum endoplasmique et appareil de Golgi) responsables de la synthèse, du repliement adéquat et du transport à la membrane plasmique des récepteurs, il est très probable qu’elles soient impliquées dans le contrôle de l’expression des RCPGs à la surface cellulaire. La caractérisation de l’homologue humain de cornichon 4 (CNIH4), un nouvel intéracteur des RCPGs identifié dans le crible, a démontré que cette protéine localisée dans les compartiments précoces de la voie de sécrétion (RE et ERGIC) interagit de façon sélective avec les RCPGs. De plus, la suppression de l’expression endogène de cette protéine préalablement non-caractérisée, diminue le transport à la membrane plasmique d’un récepteur, indiquant que CNIH4 influence positivement l’export des RCPGs du RE. Ceci est supporté par l’observation que la surexpression de CNIH4 à de faibles niveaux favorise la maturation d’un récepteur mutant normalement retenu dans le RE. Nous avons également pu démontrer que CNIH4 est associée à la protéine Sec23, une des composantes de l’enveloppe des vésicules COPII qui sont responsables du transport des protéines du RE vers le Golgi, suggérant que CNIH4 pourrait favoriser le recrutement des récepteurs dans ces vésicules. La surexpression de CNIH4 à de très hauts niveaux provoque également la rétention intracellulaire des récepteurs. Cet effet dominant négatif pourrait être causé par la titration d’un autre facteur d’export des RCPGs. Une deuxième étude a permis de révéler que la protéine transmembranaire 9 (TMEM9), un nouvel intéracteur des RCPGs également identifié dans le crible, interagit sélectivement avec les récepteurs et avec CNIH4. La surexpression de cette protéine aux fonctions précédemment inconnues, rétablit le transport normal d’un récepteur en présence de CNIH4 surexprimée. De plus, la co-expression de TMEM9 potentialise la capacité de CNIH4 à augmenter la maturation d’un récepteur mutant normalement retenu dans le RE, suggérant que ces deux protéines forment un complexe régulant la maturation des RCPGs. Au cours de cette thèse, de nouvelles protéines interagissant avec les RCPGs et contrôlant leur expression à la membrane plasmique ont donc été identifiées, permettant une meilleure compréhension des mécanismes régulant le transport des récepteurs du RE à la surface cellulaire. / G protein coupled receptors (GPCR) form the largest and most diversified family of cell-surface receptors responsible for signal transduction inside the cells. Extensive research over the last thirty years have led to the identification of multiple proteins interacting with GPCRs and controlling the signalisation, desensitization, internalization and degradation of these important pharmaceutical targets. In contrast to the processes regulating GPCR activity at the plasma membrane, the molecular mechanisms controlling GPCR biogenesis in the endoplasmic reticulum (ER) and their transport to the cell-surface are poorly characterized. The identification of the proteins regulating GPCR maturation is essential in order to understand how receptors are expressed at the plasma membrane. A proteomic screen based on bioluminescence resonance energy transfer (BRET), which allows for the detection of protein-protein interaction in living cells, led to the identification of several potential novel GPCR interactors localized in the secretory pathway. Since the cellular compartments where these proteins are localized are responsible for the synthesis, proper folding and transport to the plasma membrane of the receptors, it is highly probable that they are involve in regulating GPCR cell-surface expression. The characterization of the human cornichon homolog 4 (CNIH4), a novel GPCR interactor identified in the screen, showed that this protein localized in the early secretory pathway (ER and ERGIC), selectively interacts with GPCRs. Knockdown of the endogenous expression of this previously uncharacterized protein led to a decrease in the cell-surface expression of a receptor indicating that CNIH4 has a positive function in the ER export of GPCR. Supporting this, over-expression of CNIH4 at low levels increased the maturation of a mutant receptor normally retained in the ER. Moreover, CNIH4 interacts with Sec23, a component of the inner coat of COPII vesicles which transport proteins from the ER to the Golgi apparatus, suggesting that CNIH4 could recruit GPCRs in these vesicles. CNIH4 over-expression at very high levels also resulted in the intracellular trapping of the receptors. This dominant negative effet could be caused by the titration of another component of the GPCR export process. Another study showed that the transmembrane protein 9 (TMEM9), a novel GPCR interactor also identified in the screen, selectively interacts with GPCRs and CNIH4. Over-expression of this protein of previously unknown function restored normal receptor trafficking in presence of over-expressed CNIH4. Morevover, co-expression of TMEM9 potentialized CNIH4 ability to increase the maturation of a mutant receptor normally retained in the ER, suggesting that these proteins form a complex regulating GPCR maturation. During this thesis, novel GPCR interacting proteins controlling receptor expression at the plasma membrane were identified, allowing for a better understanding of the mechanisms controlling receptor trafficking from the ER to the cell-surface.

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