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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
11

Estudo de FEF1, uma F-box do Complexo SCF envolvida com a Proliferação Celular no Pistilo de Nicotiana tabacum L. / Study of FEF1, an SCF Complex F-box involved with Cell Proliferation in the Pistil of Nicotiana tabacum L.

Luis Fernando Roberto 30 April 2015 (has links)
O desenvolvimento dos órgãos vegetativos e florais das angiospermas depende da ação combinada e finamente regulada de eventos de proliferação e expansão celular. Estudar os genes envolvidos com a regulação destes processos permite ampliar nossa compreensão sobre o desenvolvimento da flor, de seus diferentes órgãos, do processo reprodutivo como um todo, além de permitir produzir modificações de interesse econômico. Um gene codificando uma proteína da família F-box foi identificado na biblioteca TOBEST de cDNAs de estigma/estilete de N. tabacum (Quiapim et al., 2009; Abbad, 2012). A maioria das proteínas F-box pertence ao complexo SCF (formado principalmente pelas proteínas SKP1, CUL1 e F-box), participando da marcação de proteínas alvo para a degradação pela via ubiquitina-proteassomo. O gene identificado no TOBEST demonstrou expressão preferencial nos órgãos florais e foi denominado FEF1 (Flower Expressed F-box 1). Plantas de silenciamento e superexpressão deste gene indicaram alterações no tamanho dos órgãos florais, incluindo o pistilo, foco principal de estudo em nosso laboratório (Abbad, 2012). O screening de duplo-híbrido de uma biblioteca de cDNAs de estigma/estilete de N. tabacum identificou a interação com uma SKP1, indicando que a FEF1 poderia atuar junto ao complexo SCF (Abbad, 2012). No presente trabalho foram realizadas análises macroscópicas e microscópicas em pistilos de plantas transgênicas da geração T1, que permitiram: 1) verificar a estabilidade dos transgenes e das alterações fenotípicas na descendência; 2) quantificar e analisar estatisticamente as alterações de tamanho do pistilo; e 3) verificar as alterações em nível celular, que resultaram nas alterações do tamanho do pistilo, ocorridas nas plantas transgênicas. As plantas de silenciamento apresentaram redução estatisticamente significativa do comprimento de pistilos e da largura dos ovários. As análises histológicas permitiram verificar que ocorreu a redução da proliferação celular na zona secretória do estigma e no parênquima do ovário destas plantas. Por outro lado, as plantas de superexpressão demonstraram aumento estatisticamente significativo do comprimento dos pistilos e da largura de estigmas e ovários. Nestas plantas, foi verificado o aumento do número de células na zona secretória do estigma e parênquima do ovário. A interação entre FEF1 e a SKP1 foi confirmada em experimento de BiFC (Bimolecular Fluorescence Complementation), corroborando a participação dessa F-box no complexo SCF. A interação entre estas proteínas ocorre no citoplasma das células vegetais, indicando que este é o local de atuação de FEF1. A participação no complexo SCF confere a essa F-box o papel de seleção dos alvos a serem poliubiquitinados pelo complexo. A análise de candidatos do screening revelou três novos parceiros de interação de FEF1, todos fatores de transcrição da classe I da família TCP, relacionados com a regulação da proliferação celular. Estas proteínas são candidatas à degradação no proteassomo, sinalizada pela marcação promovida pelo complexo SCFFEF1. Deste modo, propomos que a FEF1 desempenhe uma função na regulação do desenvolvimento e do tamanho final dos órgãos florais, mais especificamente do pistilo, através da regulação dos níveis de fatores de transcrição, como as TCPs aqui encontradas, envolvidas com o controle da proliferação celular. / Angiosperms vegetative and flowering organs development depends on a combined influence of finely regulated events of cell proliferation and expansion. The study of genes involved with the regulation of this processes allows the expansion of our knowledge about the flower and its organs development, of the reproductive process and allows the production of modifications of economic interest. One gene coding for an F-box family protein was identified in the TOBEST stigma/style cDNA library of N. tabacum (Quiapim et al., 2009; Abbad, 2012). The majority of F-box proteins belong to the SCF (mainly composed of the SKP1, CUL1 and F-box proteins) complex, participating in the signalization of target proteins for degradation through the ubiquitin-proteasome pathway. The gene identified on TOBEST presented preferential expression on the floral organs and was named FEF1 (Flower Expressed F-box 1). Transgenic plants silencing and overexpressing this gene indicated alteration of the floral organs, including the pistil, the main focus of study in our laboratory (Abbad, 2012). A yeast two-hybrid screening of a N. tabacum stigma/style cDNA library revealed the interaction with a SKP1 protein, indicating that FEF1 possibly functions with the SCF complex (Abbad, 2012). In the present work macroscopic and microscopic analysis of the pistils of T1 generation of transgenic plants were performed, which allowed us to: 1) Confirm the transgene and phenotypic stability through generations; 2) Quantify and statistically analyze the size alterations on the pistils; 3) Analyze the cellular modifications that produced the pistils size alterations observed in the transgenic plants. The plants silencing FEF1 presented a statistically significant reduction of the pistil length and ovary width. Histological analysis allowed the observation that a reduction in cell proliferation occurred in the secretory zone of the stigma and in the ovary parenchyma. On the other hand, overexpression plants presented statistically significant enlargement of pistil length and of stigma and ovary width. In these plants it was observed an increase in cell number in the stigma secretory zone and ovary parenchyma. The interaction between FEF1 and SKP1 was confirmed on a BiFC (Bimolecular Fluorescence Complementation), reinforcing the participation of this F-box protein in the SCF complex. The interaction between these proteins was observed to occur in the cytoplasm of plant cells, indicating that this is the cellular compartment of FEF1 action. The participation in the SCF complex confers this F-box the role of selecting targets for polyubiquitination by the complex. The analysis of candidates of the screening revealed three new interaction partners of FEF1, all of them transcription factors of the class I TCP family, related to the regulation of cell proliferation. These proteins are candidates for degradation by the proteasome, signalized by the polyubiquitination promoted by the SCFFEF1 complex. We propose that FEF1 has a role in the regulation of the development and final size of the floral organs, particularly the pistil, by regulation the levels of transcription factors like the TCPs here revealed, involved with the control of cell proliferation.
12

Régulation du suppresseur de tumeur : la protéine F-box Fbw7 / Regulation of the tumor suppressor : the F-box Fbw7

Zitouni, Sihem 02 December 2011 (has links)
Le système ubiquitine-protéasome joue un rôle central dans le contrôle de la progression du cycle cellulaire par la dégradation régulée de nombreuses protéines. Dans ce système, Fbw7 (aussi appelée Fbxw7, hCdc4, hAgo, Sel-10), est l'une des protéines F-box qui sert d'adaptateur de substrats pour l'une des plus importantes familles d'ubiquitine ligases : les complexes SCF (Skp1/Cullin/ F-box). Fbw7 assure la dégradation de plusieurs régulateurs positifs du cycle cellulaire : la cycline E, cMyc, c-Jun, Notch, Aurora A, mTOR, MCL1. En conséquence, l'altération des fonctions de Fbw7 conduit à des défauts de prolifération cellulaire, de différenciation et à de l'instabilité génomique. La mutation de Fbw7 dans les cancers entraîne une dérégulation de l'expression périodique cycline E qui n'est alors plus restreinte à la transition G1/S du cycle cellulaire. Nos résultats montrent qu'une isoforme, Fbw7, est exprimée dans les œufs de xénope matures arrêtés en métaphase II mais n'est pas fonctionnelle, expliquant la présence de grande quantité de cycline E dans les œufs à cette phase mitotique. Nous montrons que Fbw7 est maintenue inactive sous forme poly-ubiquitylée suite à sa phosphorylation par une PKC jusqu'à la fin des cycles embryonnaires rapides, au moment où la cycline E est brutalement dégradée. Nous montrons que la régulation négative de Fbw7 par PKC est conservée au cours des cycles cellulaires somatiques des cellules humaines, et contribue à l'expression périodique de la cycline E. Ces résultats mettent en évidence un nouveau mécanisme critique pour la régulation de Fbw7 au cours du cycle cellulaire et suggèrent que les fonctions de Fbw7 peuvent être altérées par une dérégulation de PKC, un phénomène observé dans de nombreux types de tumeurs humaines. / The ubiquitin-proteasome system plays a central role in the control of cell cycle progression through the regulated degradation of numerous critical proteins. In this process, one key family of ubiquitin ligases are the SCF (Skp1/Cul-1/F-box) complexes, in which F-box-bearing proteins act as substrate-recruiting factors. Fbw7 (also known as Fbxw7, hCdc4, hAgo, Sel-10) is one such F-box protein. It controls the stability and thus the levels of several positive regulators of the cell cycle, including cyclin E, cMyc, c-Jun, Notch, Aurora A, mTOR, Mcl1. As a consequence of its biological roles, alterations of the functions of Fbw7 lead to defects in cellular proliferation, differentiation and genetic instability. As seen in cancers, mutation of Fbw7 leads to deregulation of cyclin E expression, which is no more restricted to the G1-S phase boundary of the cell cycle. Here we report that Fbw7, although expressed in mature Xenopus eggs arrested in metaphase II, is not functional, explaining why cyclin E can be stockpiled in this mitotic-like phase. We found that, in these eggs as well as in early Xenopus embryos, Fbw7 is maintained under a PKC-dependent poly-ubiquitylated state until the end of the early rapid cleavage cycles where cyclin E is abruptly degraded. Importantly, we show that this PKC-dependent negative regulation of Fbw7 is conserved during human somatic cell cycles, resulting into the periodic expression of cyclin E. These findings reveal a novel mechanism critical for the temporal regulation of Fbw7 and suggest that the key functions of Fbw7 can be altered by PKC dysregulation, a mechanism known to occur in many types of human tumours.
13

Stress Response SCF Ubiquitin Ligase F box Protein Fbx15 Controls Nuclear Co repressor Localization and Virulence of the Opportunistic Human Fungal Pathogen Aspergillus fumigatus

Jöhnk, Bastian 12 April 2016 (has links)
Aspergillus fumigatus ist die häufigste Ursache für Lungeninfektionen in immunsuppri-mierten Patienten. Virulenzfaktoren sind häufig an Kontrollmechanismen für Entwick-lung gekoppelt, welche im verwandten Modellorganismus Aspergillus nidulans entdeckt wurden. Diese Arbeit präsentiert die Charakterisierung des F-box Proteins Fbx15 in A. fumigatus, welches einen starken Einfluss auf die Entwicklung in A. nidulans hat. Die Deletion von fbx15 resultierte in starken Wachstumsdefekten unter vielen Stress induzie-renden Bedingungen, welche klassische Virulenz Faktoren beinhalten, wie erhöhte Tem-peratur, oxidativer Stress und Aminosäuremangel, während das Wachstum unter Stan-dardbedingungen nicht beeinflusst war. Oxidativer Stress induziert eine transiente Erhöhung der fbx15 Expression, welche nach 40 Minuten zu einer dreifach erhöhten Pro-teinmenge führte. Fbx15 ist ein stabiles F-box Protein mit einer Halbwertszeit von 90 Minuten. Generell funktionieren F-box Proteine als Substratadapter für SCF-E3-Ubiquitin-Ligasen. Fbx15 liegt unter normalen Bedingungen phosphoryliert vor und in-teragiert mit der Skp1/A Untereinheit des SCF-Komplexes, vorzugsweise in kleineren Subpopulationen im Zytoplasma. Phosphoryliertes Fbx15 wird bevorzugt in SCF-Komplexe eingebaut. Oxidativer Stress führt zu einer schnellen Dephosphorylierung von Fbx15. Fbx15 Varianten, welche nicht phosphoryliert werden können, interagieren mit Skp1/A primär im Kern. Fbx15 rekrutiert drei Untereinheiten des COP9-Signalosoms und Proteine welche in Transkription, Translation, Signalübertragung, Morphologie oder Stoffwechsel involviert sind. Fbx15 bindet die Ssn6/F Untereinheit des konservierten Ssn6/SsnF-Tup1/RcoA Co-Repressors und wird für dessen Kernlokalisation benötigt. Dephosphoryliertes Fbx15 interagiert mit Ssn6/F im Kern und eine Fbx15-Ssn6/F be-dingte Genrepression wird für die Reduzierung der Gliotoxin-Biosynthese benötigt. fbx15 Deletionsstämme sind nicht in der Lage immunsupprimierte Mäuse in einem Model für invasive Aspergillose zu infizieren, was eine essentielle Funktion von Fbx15 für die Viru-lenz bestätigt. Diese Arbeit zeigt, dass Fbx15 nicht nur Teil von SCF-E3-Ubiquitin-Ligasen sein kann, sondern eine zweite neue molekulare Funktion aufweist, welche die physische Interaktion mit der Co-Repressor Untereinheit Ssn6/F und dessen Lokalisa-tionskontrolle beinhaltet. Diese duale Funktion resultiert in einer essentiellen Funktion von Fbx15 für die Kontrolle der oxidativen Stressantwort, des Sekundärmetabolismus und der Virulenz im opportunistischen Humanpathogen A. fumigatus.
14

STRUCTURAL AND FUNCTIONAL STUDIES OF F-BOX-ONLY PROTEIN FBXO7 AND ITS INTERACTIONS WITH PROTEASOME INHIBITOR PI31

Shang, Jinsai 01 August 2015 (has links)
F-box only protein 7 (Fbxo7), a member of the F-box-only subfamily of FBPs, is a biologically and pathophysiologically important human protein that assumes many critical functions. The different functions of Fbxo7 depend on the formation of various multi-protein complexes. Possible interplay between different Fbxo7 functions further complicate the protein-protein interaction networks involved in Fbxo7 biology. Although significant progresses have been made to understand the functions, regulation, specificity, and protein interaction network of Fbxo7, a myriad of questions remain to be answered. The objectives of the work presented in this dissertation are to elucidate the molecular structures underlying the functions of Fbxo7 and the interaction with its protein partners, such as proteasome inhibitor PI31. The best known biological function of Fbxo7 is its role as the substrate-recognition subunit of the SCFFbxo7 (Skp1-Cul1-F-box protein) E3 ubiquitin ligase that catalyzes the ubiquitination of hepatoma up-regulated protein (HURP) and inhibitor of apoptosis protein (IAP). Fbxo7 also assumes various SCF-independent functions through interact with its protein partners that are not the substrates of the ubiquitin proteasome system, such as PI31, Cdk6, p27, PINK1 (PTEN-induced kinase 1), and Parkin. PI31 is a known proteasome regulator which was initially characterized as a proteasome inhibitor in vitro. The binding affinity between Fbxo7 and PI31 is very strong, and The Fbxo7-PI31 interaction is mediated by heterodimerization of the FP domains of the two proteins. This work is focus on study the protein structure of the two FP domains in Fbxo7 and PI3. Chapter 1 reviewed the F-box-only protein Fbxo7 biology including the function of Fbxo7 protein in ubiquitination proteasome pathway and some SCF-independent functions which are relate to human disease. Chapter 2 discussed the function of proteasome inhibitor PI31. With the many important biological functions, Fbxo7 is clearly an extraordinary important protein, but the lack of structural knowledge has hampered efforts to achieve a better understanding of Fbxo7 biology. In this work, we have determined the crystal structure of Fbxo7 FP domain (residues 181-335) and the crystal structure of the PI31 FP domain (residues 1-161) using a longer protein construct both at 2.0Å resolution. The Fbxo7 FP domain adopts an α/β-fold similar to that of the PI31 FP domain and the secondary structure elements of the two FP domains are comparable including the C-terminal helix, indicating that the two FP domains share the same overall global fold. However, an α helix and three β strands in the Fbxo7 are longer than their counterparts in the PI31 FP domain. The two FP domains also differ substantially in the length and conformation of the longest connecting loop. More importantly, structural differences between the two FP domains lead to drastically different modes of inter-domain protein–protein interaction: the PI31 FP domain utilizes either an α interface or β interface for homodimeric interaction, whereas the Fbxo7 FP domain utilizes an αβ interface. We have note that the inter-domain interaction of the Fbxo7 FP domain is much more extensive, featuring a larger contact surface area, better shape complementarity and more hydrophobic and hydrogen-bonding interactions. The results of this structural study provide critical insights into how Fbxo7 may dimerize (or multimerize) and interact with PI31 via the FP domain. Chapter 4 and Chapter 5 discussed the structure determinations, structure features and detail of protein-protein interactions of Fbxo7 and PI31 FP domains. Chapter 2 reviewed the corresponding fundamental biochemical techniques that been used in this study. Chapter 3 discussed protein structure determination by X-ray crystallography in structural biology studies. It was believed that the FP domains of Fbxo7 and PI31 mediate homodimerization and heterodimerization of the proteins and the FP domain is not present in other human proteins. In order to study the Fbxo7-PI31 heterodimerization protein-protein interactions, we performed modeling studies. Chapter 6 discussed the model building and binding studies. Based on the result of model building studies, we propose that an interaction between the two FP domains of Fbxo7 and PI31 should be mediated by a αβ interface using the α-helical surface of the Fbxo7 FP domain and the β-sheet surface of the PI31 FP domain. According to the result of pull down assay, the PI31 FP domain may complete with Skp1 for the binding with Fbxo7. It is possible that the formation of heterodimer between the Fbxo7 and PI31 mediate by FP domains may lead to the Fbxo7 dissociation from SCFFbxo7 complex which might reveal a new regulation mechanism.
15

The F-box protein FBW7 negatively regulates the stability of ERK3 protein

Walters, Nicole 18 August 2021 (has links)
No description available.
16

Insights into the evolution and establishment of the Prunus-specific self-incompatibility recognition mechanism / サクラ属に特異な自家不和合性認識機構の進化成立過程に関する研究

Morimoto, Takuya 23 March 2017 (has links)
京都大学 / 0048 / 新制・課程博士 / 博士(農学) / 甲第20420号 / 農博第2205号 / 新制||農||1047(附属図書館) / 学位論文||H29||N5041(農学部図書室) / 京都大学大学院農学研究科農学専攻 / (主査)教授 田尾 龍太郎, 教授 奥本 裕, 教授 寺内 良平 / 学位規則第4条第1項該当 / Doctor of Agricultural Science / Kyoto University / DFAM
17

Understanding and Engineering Chemically Activated Ubiquitin Ligases for High-throughput Detection, Quantification, and Control of Molecules in Yeast

Chaisupa, Patarasuda 10 June 2024 (has links)
Fungi, diverse and impactful organisms, exert both beneficial and harmful effects on plants, animals, and humans. Certain fungi produce auxin or indole-3-acetic acid (IAA), a crucial plant growth hormone that influences various aspects of plant growth and defense mechanisms. Conversely, pathogenic fungi can produce auxin and manipulate auxin signaling in their host plant to promote fungal virulence and infection progression. Targeting the auxin signaling pathway in pathogenic fungi offers a novel strategy for combating fungal infections in both plants and humans. Nevertheless, the auxin biosynthesis pathway and the role of auxin in fungal symbioses is not fully understood, in part, due to the lack of a tool for measuring intracellular auxin with high spatial and temporal resolution. This dissertation presents the first genetically encoded biosensor engineered from the E3 ubiquitin ligase to detect and quantify intracellular auxin in a Saccharomyces cerevisiae model. The biosensor has been applied to begin studying auxin metabolism and biosynthesis in yeast as well as better understand the plant auxin co-receptor proteins from which it is built. Additionally, the biosensor is re-engineered for application in inducible protein degradation, controlled by auxin. This tool could be applied to identify novel protein targets for disrupting pathogenic fungal species. Overall, this research offers valuable tool and platform for studying auxin biosynthesis pathway, plant protein and auxin signaling as well as intracellular proteins in fungi. / Doctor of Philosophy / Fungi affect plants, animals, and humans, in both beneficial and harmful ways. Some fungi aid other organisms, while others cause illness. Certain fungi produce a hormone called auxin, or indole-3-acetic acid (IAA), which is essential for plant growth and many environmental responses. Auxin can also assist plants in defending against harmful fungi. Conversely, fungi that infect plants can utilize auxin to promote their own growth and spread. Some fungi even produce auxin, possibly aiding in their colonization of plants. In human fungal infection, it is suggested that auxin may be involved in virulent traits and disease progression. Targeting the auxin signaling pathway in harmful fungi presents an innovative approach to combat fungal infections in both plants and humans. However, our understanding of fungal auxin biosynthesis pathways and their role in fungal infections are not fully understood due to the lack of tools to measure auxin in cells efficiently and accurately. This study introduces the first biological tool, called a biosensor, engineered from auxin responsive proteins from plants, to detect and measure intracellular auxin in Baker's yeast. The biosensor has been used to investigate auxin production by yeast. Additionally, the biosensor has been re-engineered for application in inducible protein degradation, controlled by auxin. This tool could be applied to identify novel protein targets for disrupting pathogenic fungal species. Overall, this research provides useful tool and platform to study auxin production, plant protein function and particular proteins in fungi.
18

Charakterisierung von humanem PI31 und neuen alternativen Spleißvarianten des PI31 Gens PSMF1

Schwarz, Tobias 01 April 2009 (has links)
Das Ubiquitin-Proteasom-System eukaryotischer Zellen spielt eine zentrale Rolle beim Abbau von fehlgefalteten und nicht mehr benötigten Proteinen. Damit erfüllt es regulatorische Funktionen bei zellulären Prozessen wie z.B. dem Zellzyklus und der Transkription. Das Protein Proteasominhibitor 31 (PI31) wurde als Inhibitor des Proteasoms in vitro charakterisiert. Des weiteren wurde gezeigt, daß überexprimiertes PI31 im murinen System ein Modulator der Assemblierung des Immunoproteasoms (i20S) ist. Über die Funktion und Regulation von PI31 im humanen System war bisher nichts bekannt und wurde deshalb in dieser Arbeit untersucht. Es konnte gezeigt werden, daß neben dem PI31-Transkript mindestens neun weitere alternative Spleißvarianten des humanen PI31 Gens PSMF1 existieren. Die PI31-Isoformen V2 bis V10 unterscheiden sich von PI31 (V1) teils durch eine fehlende N-terminale Domäne oder einen veränderten C-Terminus. Die Isoform V5 wird als einzige gewebespezifisch in Testikeln exprimiert und ist im Zellkern lokalisiert. Ausschließlich die Überexpression der Isoform V3 führt zur Inhibition der proteasomalen Aktivität in vivo. Ein modulatorischer Einfluß von PI31 oder einer der Isoformen auf die Assemblierung des humanen i20S bestätigte sich dagegen nicht. Die Überexpression von PI31 und V3 in humanen Zellen führte indes zu einer Akkumulation und verzögerten Degradation von proteasomalen Substraten. Es wurde außerdem gezeigt, daß die Expression von humanem PI31 durch virusassoziierte Stimuli wie dsRNA und Typ I-Interferone induziert werden kann. Für die 3kb lange 3’UTR der PI31-mRNA konnte zusätzlich nachgewiesen werden, daß sie inhibitorisch auf die Expression wirkt und somit eine regulatorische Funktion besitzt. In Zusammenhang mit der von Kirk et al. (2008) gezeigten Heterodimerisierung von PI31 mit dem F-Box Protein Fbxo7, weisen die hier vorgestellten Ergebnisse auf eine Funktion von PI31 und dessen Isoformen bei der Ubiquitinierung von proteasomalen Substraten hin. / The ubiquitin–proteasome pathway is the major intracellular system for protein degradation. It plays an important role in the regulation of cellular processes like cell cycle control, signal transduction and gene transcription. The protein proteasome inhibitor 31 (PI31) was initially characterized as a potent inhibitor of proteasomal activity in vitro. Furthermore it was shown that PI31 modulates the assembly of the murine immunoproteasome (i20S). The function and regulation of PI31 in the human system is so far unexplored and therefore the topic of this study. It was shown that at least nine alternatively spliced variants of the PI31 gene PSMF1 exist additionally to the PI31 transcript. The PI31 isoforms V2 to V10 differ from PI31 (V1) in parts of the N-terminus and in a modified C-terminus. Only the isoform V5 is tissue specific expressed in testis and localized in the nucleus. After overexpression only the isoform V3 has the ability to inhibit the proteasomal activity in vivo. In contrast to the murine system neither PI31 nor the isoforms showed a modulatory effect on the assembly of the i20S. The overexpression of PI31 and V3 in human cells results instead in the accumulation and delayed degradation of proteasomal substrates. Furthermore the expression of human PI31 can be induced by virus associated stimuli like dsRNA and type I interferones. In addition, for the 3kb long 3’UTR of the PI31-mRNA an inhibitory effect on the expression and therefore a regulatory role was shown. Together with data from Kirk et al. (2008), who show the heterodimerization of PI31 with the F-box protein Fbxo7, the presented results suggest a function of PI31 and its isoforms in the process of ubiquitination of proteasomal substrates.
19

Functional and mechanistic characterization of the F-box protein Fbxw5 / Funktionale und mechanistische Charakterisierung des F-box proteins Fbxw5

Werner, Achim 01 November 2010 (has links)
No description available.
20

Caracterização de um Novo Gene da Família F-box Expresso no Pistilo de Nicotiana tabacum L. / Characterization of a New F-box Family Gene Expressed in the Nicotiana tabacum L. Pistil

Samantha Vieira Abbad 13 August 2012 (has links)
O estudo da reprodução sexual de plantas e uma área de crescente interesse devido a importância de sementes e frutos em nossa dieta diária, ambos resultantes do desenvolvimento de partes do pistilo, apos fertilização. O objetivo deste trabalho foi caracterizar um novo gene F-box expresso no pistilo de N. tabacum. Proteínas F-box atuam na interação proteína-proteína, geralmente direcionando proteínas alvo para degradação pela via ubiquitina-proteassomo. Foram identificados cinco genes de função desconhecida que codificam putativas proteínas F-box, em duas bibliotecas de cDNAs de estigmas/estiletes de N. tabacum (DEPAOLI, 2006; QUIAPIM et al., 2009) previamente construídas em nosso laboratório. A expressão de cada um destes genes foi analisada nos diferentes órgãos de N. tabacum, por qRT-PCR. O clone 085H05 da biblioteca TOBEST (QUIAPIM et al., 2009) apresentou expressão preferencial nos órgãos florais. Este clone foi selecionado para uma caracterização funcional mais detalhada. O padrão de expressão deste gene foi avaliado no estigma/estilete durante os 12 estádios do desenvolvimento floral de N. tabacum (KOLTUNOW et al., 1990). O resultado revelou que sua expressão e regulada durante o desenvolvimento, atingindo o maior nível de expressão na antese (estádio 12). Isto sugere que este gene esteja envolvido no desenvolvimento do estigma/estilete. A sequência codificadora do gene correspondente a 085H05 foi determinada e, apos amplificação e clonagem, este gene foi denominado S/S_F-box (Stigma/Style_F-box). Para compreender a função da proteína de S/S_F-box, plantas transgênicas de superexpressao e de silenciamento (por RNAi) deste gene foram geradas. As plantas de RNAi apresentaram o estilete e o ovário reduzidos quando comparados ao controle SR1. Em concordância, as plantas de superexpressao produziram flores com o estilete mais alongado do que o controle, alem do estigma e do ovário de maior tamanho. Altas concentrações de exudato foram observadas na superfície do estigma destas plantas, a partir do estádio 7 tardio. No controle SR1, concentrações equivalentes apenas são observadas nos estádios finais do desenvolvimento. Os fenótipos observados nas plantas transgênicas sugerem que a proteína codificada por S/S_F-box esteja envolvida com o desenvolvimento do pistilo e com o controle do tamanho deste órgão. Adicionalmente, as plantas de RNAi apresentaram o fenótipo de perda da dominância apical. Os níveis de expressão do gene S/S_F-box foram avaliados em plantas que tiveram aumento na produção de auxina no estigma/estilete (plantas STIG1prom::iaaM), revelando que este gene não e regulado, a nível transcricional, por este hormônio. Experimentos de localização subcelular, realizados por expressão transitória da sequência de S/S_F-box fusionada a sequência dos genes repórteres GFP e YFP (S/S_F-box::GFP; S/S_F-box::YFP), indicaram que a proteína S/S_F-box esta localizada no citoplasma e no núcleo celular. Adicionalmente, foi realizado o screening de uma biblioteca de cDNAs de estigma/estilete, construída no sistema de duplo-hibrido, para investigar proteínas candidatas a interagirem com a proteína de S/S_F-box. Os resultados indicaram interação da proteína S/S_F-box com SKP1, confirmando a participação de S/S_F-box no complexo SCF, que promove a degradação de proteínas alvo pela via ubiquitina-proteassomo. Duas proteínas candidatas a alvo foram identificadas: os fatores de transcrição VOZ1 e SIP1, ambos envolvidos com a proliferação celular. Em suma, e possível propor que a proteína codificada por S/S_F-box tenha função relacionada a proliferação celular e ao desenvolvimento dos órgãos vegetais, incluindo o pistilo. / The study of sexual reproduction in plants is an area of increasing interest due to the importance of seeds and fruits in our daily diet, both resulting from the development of parts of the pistil, after fertilization. The aim of this study was to characterize a new F-box gene expressed in the N. tabacum pistil. F-box proteins act in protein-protein interactions, generally directing target proteins to degradation via ubiquitin-proteasome. Five genes of unknown function coding for putative F-box proteins were identified at two cDNAs libraries from N. tabacum stigmas/styles (DEPAOLI, 2006; QUIAPIM et al., 2009), previously constructed in our laboratory. The expression of each of these genes was analyzed in the different N. tabacum organs, by qRT-PCR. The 085H05 clone from the TOBEST library (QUIAPIM et al., 2009) showed preferential expression in floral organs. This clone was select for a more detailed functional characterization. The expression pattern of this gene was evaluated in the stigma/style during the 12 N. tabacum flower developmental stages (KOLTUNOW et al., 1990). The result revealed that its expression is regulated during development, reaching the highest expression level at anthesis (stage 12). It suggests that this gene is involved in the stigma/style development. The coding sequence of the gene corresponding to 085H05 was determined and, after amplification and cloning, the gene was named S/S_F-box (Stigma/Style_F-box). To understand the S/S_F-box protein function, transgenic plants either overexpressing or silencing (by RNAi) the S/S_F-box gene were generated. The RNAi plants showed reduced style and ovary when compared to the control SR1. In accordance, the overexpressing plants produced flowers with a style more elongated than the control, besides an ovary and a stigma of larger size. High concentrations of exudate were observed on the stigma surface of these plants, since the later stage 7. In the control SR1, equivalent concentrations are only observed at the later stages of development. The phenotypes observed in the transgenic plants suggest that the protein encoded by S/S_F-box is involved with pistil development and with the control of pistil size. Additionally, the RNAi plants showed the phenotype of loss of apical dominance. The expression levels of the S/S_F-box gene were evaluated in plants with increased auxin production in the stigma/style (plants STIG1prom::iaaM), showing that this gene is not transcriptionally regulated by this hormone. Subcellular localization experiments, carried out by transient expression of the S/S_F-box sequence fused to the reporter genes GFP and YFP V (S/S_F-box::GFP; S/S_F-box::YFP), showed that the S/S_F-box protein is localized in the cytoplasm and in the nucleus. Additionally, the screening of a stigma/style cDNA library constructed on the yeast two hybrid system was performed, to investigate candidate proteins for S/S_F-box protein interaction. The results indicated interaction between S/S_Fbox and the SKP1 protein, confirming the involvement of the S/S_F-box protein in the SCF complex, which promotes degradation of target proteins via ubiquitin-proteasome. Two candidates for target proteins were identified: the transcription factors VOZ1 and SIP1, both involved in cell proliferation. In summary, it is possible to propose that the protein encoded by S/S_F-box has functions related to cell proliferation and organ development, including the pistil.

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