Ecological communities are collections of species bound together by their influences on one another. Community structure, therefore, refers to the way in which these influences are organised. As a result, ecologists are mainly interested in the factors driving the structure, functioning, and persistence of communities. The traditional focus, however, has been on the feeding relationships among species (direct trophic interactions), whereas relationships mediated by a third species or the environment (indirect interactions) have been largely overlooked. I investigated the role of indirect interactions in structuring communities through a series of field experiments in a diverse assemblage of arthropods living on a Brazilian shrub species. I experimentally reduced the abundance of the commonest galler on the shrub and found that the perturbation resonated across the food web, affecting its structure and robustness. Since there was no potential for these effects to be propagated directly or indirectly via the documented trophic links, the effects must have spread non-trophically and/or through trophic links not included in the web. Thus, I investigated non-trophic propagation of effects in the system. I demonstrate that hatched galls of the commonest galler, which serve as habitat for other species, can mediate non-trophic interactions that feedback to the galler modifying its interactions with parasitoids and inquiline aphids. I performed further manipulative experiments, excluding ants, live galls and hatched galls, to reveal mechanisms for the non-trophic interaction modifications observed in this system. Finally, I explored how non-trophic interaction modification could affect the structure and stability of a discrete ecological community in the field. I investigated how the densities of certain pairs of groups relate to each other, and how their relationship changes in relation to a third group. Then, I assembled an "effect network" revealing, for the first time in an empirical community, a hidden web of non-trophic indirect interactions modifying the direct interactions and modifying each other. Overall, the thesis presents evidence that communities are strongly interconnected through non-trophic indirect interactions. This is one of the first empirical demonstrations of the context-dependent modification of interactions via non-trophic interactions. However, determining the mechanisms behind such interaction modifications may be unfeasible. Understanding how the observed effects relate to community structuring requires shifting our focus from bipartite interaction networks to a more holistic approach.

Cette thèse a pour objectif de combiner plusieurs théories opérant à différentes échelles spatiales afin de mieux prédire l'effet des changements globaux, tels que la modification du climat, l’exploitation intensive des ressources ou la disparition des espaces naturels, sur la structure et le fonctionnement des écosystèmes. L'originalité de ce travail est l'utilisation de la masse corporelle des espèces pour caractériser à la fois leur dynamique spatiale, leurs interactions trophiques ainsi que les flux de biomasse au sein de l’écosystème. Cette approche offre l'avantage de relier les propriétés des écosystèmes à un trait fonctionnel mesurable à l'échelle de l'espèce, voire même de l'individu.J'étudie dans un premier temps le lien entre la diversité des écosystèmes et leur stabilité, qui est une question centrale dans le domaine de l’écologie. Il a été démontré que les écosystèmes très diversifiés en espèces ne devraient pas perdurer du fait de leur trop grande sensibilité aux perturbations, ce qui soulève un paradoxe puisque les écosystèmes riches en espèces abondent dans la nature. Grâce à la compilation et à l'analyse d'un important jeu de données d'écosystèmes empiriques, je montre qu'il n'existe pas de relation entre la stabilité, la diversité et la complexité des écosystèmes. Une analyse détaillée des données démontre que la structure très organisée des flux de biomasse observés entre les prédateurs et leurs proies est l’un des principaux fondements de la stabilité des écosystèmes.Je relie ensuite ces propriétés stabilisantes à des caractéristiques mesurables à l’échelle de l’espèce. À partir de la masse corporelle des espèces, je détermine les interactions trophiques, les besoins énergétiques ainsi que les biomasses à l’équilibre des espèces d’un écosystème afin de modéliser des réseaux trophiques réalistes. Je trouve que les écosystèmes composés d’espèces de masses corporelles très différentes sont caractérisés par un nombre important d'interactions proie-prédateur de faible intensité et sont plus stables que ceux possédant des espèces de masse corporelle similaires.J'étudie enfin l’effet de la taille et de l’isolement d’un habitat sur la moyenne et la variance de la masse corporelle des espèces qui y coexistent à partir de modèles intégrant les différences interspécifiques de dispersion, de vulnérabilité aux extinctions et la position trophique des espèces. Je compare les prédictions des modèles aux distributions de masse corporelle observées dans les assemblages de poissons récifaux tropicaux en me basant sur une base de données globale. L'analyse de ces données démontre que les assemblages locaux de poissons ne correspondent pas à un sous-ensemble aléatoire du pool régional et valident les prédictions de la théorie allométrique et trophique de la biogéographie des îles.L’intégration de l’écologie fonctionnelle, de la biogéographie et de la théorie sur la stabilité des systèmes dynamiques ouvre de nouvelles perspectives pour la conservation des écosystèmes puisqu'elle met en évidence l'effet de la fragmentation des espaces naturels sur la diversité fonctionnelle, et par extension sur la structure et le fonctionnement des écosystèmes. / The general objective of this thesis is to combine theories acting at different spatial scales in order to better predict the effect of global changes, such as such as resource overexploitation, climate change or habitat fragmentation, on ecosystem functioning. The unique feature of this work is the use of species body mass to describe both spatial dynamics, trophic interactions and biomass flows between the species of an ecosystem. An advantage to this approach is that it links ecosystem properties to a functional trait, measured at the species or even the individual level.First, I study the relationship between the diversity and the stability of ecosystems. It has been demonstrated that species-rich, complex ecosystems should be too sensitive to perturbations to persist through time, which raises a paradox as many species-rich ecosystems are observed in nature. With the compilation and the analysis of a large dataset of empirically measured ecosystems, I show that there is no relationship between stability and diversity or complexity in real ecosystems. A further analysis demonstrates that the non-random organization of energy flows between predators and prey allows complex ecosystem to be stable.A second step is to link this stabilizing structure to species functional traits. I derive food web topology, species energetic needs and equilibrium densities from body mass to build quantitative realistic food webs. I find that food webs composed of species with very different body masses are characterized by a high number of weak trophic interactions and are more stable than food webs with more similar species.Finally, I study the effect of habitat area and isolation of the mean and variance of species body mass distribution, using models integrating the interspecific variability of dispersal ability, vulnerability to extinctions and trophic position. I compare model predictions to observed body mass distributions of fish assemblages found on tropical reefs with a global database. I find that body mass distribution in local fish assemblages does not correspond to a random sample of the regional species pool, which confirms the predictions of the allometric and trophic theory of island biogeography.The integration of functional ecology, island biogeography and theory on the stability of complex systems open new perspectives in the fields of macroecology and ecosystem management since it highlights the potential impact of habitat destruction and fragmentation on the functional reorganization of species assemblages and therefore on the structure and functioning of ecosystems.

A demanda da população humana por alimentos, fibras e biocombustíveis impõe crescimento pronunciado na agricultura intensiva e, com ela, no consumo de fertilizantes. Este manejo de fertilizantes leva a alterações dramáticas nas quantidades e proporções de nutrientes em agroecossistemas que, por sua vez, podem influenciar comunidades biológicas por meio de alterações na biomassa, qualidade nutricional e composição de produtores. Uma tendência no cenário produtivo brasileiro recente é a expansão das culturas de biocombustíveis, notadamente da cana-de-açúcar (etanol) e da soja (biodiesel), sobre ambientes de cerrado. Estas culturas, que juntas cobrem nada menos que 30 milhões de hectares do território brasileiro, demandam padrões contrastantes de fertilização. A cana-de-açúcar exige altas proporções de nitrogênio relativo a fósforo, enquanto que a soja exige altas proporções de fósforo relativo a nitrogênio. Esta dissertação teve como objetivo testar os efeitos diretos e indiretos que as alterações nas quantidades e proporções de N e P que se seguem à conversão de ambientes nativos para o cultivo de cana-de-açúcar e soja têm sobre comunidades biológicas. Estes objetivos foram testados por meio de dois experimentos em mesocosmos aquáticos manipulando nutrientes, algas, girinos e ninfas de libélulas. O primeiro experimento seguiu um delineamento fatorial completo cruzando três concentrações de N (Nreferência, Nsoja, Ncana) e três concentrações de P (Preferência, Psoja, Pcana), e dois níveis tróficos (algas e girinos de Physalaemus cuvieri). Níveis de nutrientes manipulados simularam condições medidas em corpos d´água de cerrado, ou padrões de fertilização conhecidos para culturas de cana-de-açúcar e de soja. No segundo experimento pareamos essas concentrações (Nreferência Preferência, Nsoja, Psoja, Ncana Pcana) de forma a reduzir a dimensionalidade do experimento e assim permitir a inclusão de um terceiro nível trófico (algas, girinos de Hypsiboas faber e ninfas de libélulas). Incluímos ainda um tratamento no qual as ninfas de libélulas estiveram engaioladas para separar os efeitos da predação de girinos, dos efeitos da alteração nos seus atributos. As principais variáveis de resposta em ambos experimentos foram concentração de clorofila a como indicadora de biomassa de fitoplâncton, e mortalidade, massa final e estágio de desenvolvimento final de girinos como indicadores de rendimento de consumidores. Uma comparação na concentração de clorofila antes e depois da introdução de girinos procurou testar o efeito da adição de consumidores na biomassa de produtores. Conforme esperado, NT e PT medidos responderam expressivamente à manipulação de N e P. Nas semanas que antecederam a introdução de girinos, a biomassa algal cresceu em resposta ao aumento na concentração do nitrogênio, mas não do fósforo; esta tendência se manteve ao longo dos experimentos. Isso provavelmente ocorreu porque concentrações medidas de NT variaram da oligotrofia à hipertrofia; por sua vez, concentrações medidas de PT estiveram consistentemente em valores considerados hipertróficos. A introdução de girinos não exerceu efeitos evidentes sobre a concentração de clorofila a, possivelmente indicando que o alimento era abundante o suficiente para não ocorrer competição entre consumidores. O rendimento de consumidores foi significativamente influenciado pela manipulação de nutrientes. Tratamentos ricos em P levaram a uma redução no crescimento de Physalaemus cuvieri, e uma tendência à redução no seu desenvolvimento e sobrevivência. De forma similar, o cenário de fertilização de soja - portanto rico em P - levou a uma redução significativa na sobrevivência de H. faber. Por sua vez, o cenário de fertilização de cana-de-açúcar levou a um ganho de massa de H. faber 30% superior ao controle. Formulamos a hipótese que esta diminuição no crescimento e sobrevivência de girinos em cenários de fertilização ricos em P teria sido causada pela proliferação de cianobactérias, frequentemente impalatáveis ou mesmo tóxicas, e que tendem a ser favorecidas em ambientes de baixa proporção N:P. Ao contrário do que esperávamos, ninfas de libélulas não foram capazes de promover redução direta ou indireta no crescimento ou sobrevivência de girinos, ou influenciar a biomassa de fitoplâncton. Concluímos que as alterações nos níveis de nutrientes que acompanham a conversão de ambientes nativos para paisagens agrícolas tem efeitos importantes sobre cadeias alimentares aquáticas (controle \'bottom-up\'), e que estes efeitos são muito mais fortes do que aqueles mediados pela presença de predadores (controle \'top-down\'). No entanto, estes efeitos não são necessariamente intuitivos, uma vez que determinados padrões de fertilização influenciam negativamente o rendimento de elos intermediários da cadeia e, portanto, a transmissão da biomassa para níveis tróficos superiores. / The human demand for food, fibers and biofuels imposes a pronounced growth in intensive agriculture and, with it, in the consumption of fertilizers. Fertilizer management promotes dramatic changes in the quantities and proportions of nutrients in agroecosystems which, in turn, influence biological communities through changes in the biomass, nutritional quality, and composition of producers. A recent trend in the Brazilian productive scenario is the expansion of biofuel crops - notably sugarcane (ethanol) and soybean (biodiesel) - over the cerrados. These crops, covering no less than 30 million hectares in the country, demand contrasting fertilization patterns: sugarcane requires high proportions of nitrogen relative to phosphorus, whereas soybean requires high proportions of phosphorus relative to nitrogen. The objective of this thesis was to test the direct and indirect effects that changes in the quantities and proportions of N and P that follow conversion of native habitats to sugarcane and soybean fields have on biological communities. These objectives were achieved by means of two mesocosm experiments manipulating nutrients, algae, tadpoles and dragonfly naiads. The first experiment followed a full factorial design crossing three concentrations of N (Nreference, Nsoy, Ncane) and three concentrations of P (Preference, Psoy, Pcane), as well as two trophic levels (algae and Physalaemus cuvieri larvae). Nutrient levels simulated conditions measured in water bodies of the cerrado, or patterns of fertilization known for sugarcane or soybean crops. In the second experiment we paired these concentrations (Nreference Preference, Nsoy Psoy, Ncane Pcane) so as to reduce dimensionality and as such to permit inclusion of a third trophic level (algae, Hypsiboas faber larvae, dragonfly naiads). We included an additional treament with caged naiads to separate the effects of actual tadpole predation from those of changes in tadpole traits. The main response variables in both experiments were cholophyll a concentrations as na indicator of phytoplankton biomass, and tadpole mortality, final mass and final developmental stage as indicators of consumer performance. A comparison in the concentration of chlorophyll a before and after the introduction of tadpoles tested the effect of consumers on producer biomass. As expected, measured TN and TP responded strongly to N and P manipulations. In the weeks preceding the introduction of tadpoles, algal biomass increased in response to the concentration of N, but not to the concentration of P; this trend was maintained throughout the experiment. This probably happened because measured TN varied from oligotrophic to hypertrophic conditions; in contrast, measured TP consistenly corresponded to hypertrophic conditions. Tadpole introduction had no evident effects on chlorophyll concentrations, possibly indicating that food was abundant and competition among tadpoles, if present, was weak. Consumer performance was significantly influenced by nutrient manipulations. P-rich treatments led to a reduction in growth, and to a reduction trend in development and survivorship, of Physalaemus cuvieri. Similarly, the scenario of soybean fertilization - therefore P-rich - led to a significant reduction in Hypsiboas faber survivorship. The scenario of sugarcane fertilization led to a 30% increase in mass gain in Hypsiboas faber. We hypothesized that this reduction in tadpole growth and survivorship in P-rich environments was caused by a proliferation of unpalatable or even toxic cyanobacteria, which are favored in low N:P ratio environments. Contrary to our expectations, dragonfly naiads did not cause a direct or indirect reduction in tadpole growth or survivorship, nor influence phytoplankton biomass. We conclude that changes in nutrient levels that accompany the conversion of native habitats to agricultural fields can have strong effects on freshwater food chains (\'bottom-up\' control), and that these effects are much stronger than those mediated by predator presence (\'top-down\' control). However, bottom-up effects are not necessarily intuitive as certain fertilization patterns negatively influence the performance of intermediate consumers and, as such, the transmission of biomass to higher trophic levels.

Made available in DSpace on 2016-04-26T19:39:30Z (GMT). No. of bitstreams: 1 2008- Adriana Franca Figueira.pdf: 537748 bytes, checksum: 017dd6e5f56c6004730e6d805ff5074b (MD5) Previous issue date: 2008-02-15 / Coordena??o de Aperfei?oamento de Pessoal de N?vel Superior / Nematodes are possibly one of the oldest forms of existing life. They are microscopical animals and respond to changes in the environment. This work has the objective to extend the referring knowledge to the influences of the land use cover changes systems over the population of soil nematodes. One gives credit that the different systems of agricultural management and land cover act directly on the population of the nematodes. The study discussed in Chapter 1 was lead from an experiment of long term duration in the experimental field of the Embrapa Gado de Corte in Campo Grande MS. The evaluated treatments were: CD - original Cerrado forest, an area without disturbance for agriculture; PL - permanent pasture of B. decumbens implanted in December of 1993, joined with the mucunoides legumes with fertilization of biennial maintenance; SCV - area under continuous farming of soybean since 1993, with conventional management, without winter culture, SCS - area under continuous farming of soybean since 1993, conservacionist soil, with plantation of millet in the winter; SPD - area under continuous farming of soybean since 1993, without soil preparation, with direct plantation of the soybean with millet in the winter. Based on taxonomics characteristics and ecological parameters, the nematodes communities were analyzed in function of the total abundance, trophic function, standard of decomposition of the organic substance, diversity of Shannon, dominance of Simpson, equitability of Pielou and degree of disturbance. It was observed that there had been identified a total of 70 genus accumulated in the five studied. The genus most abundant was Helicotylenchus, Acrobeles, Eucephalobus, Cephalobus and Tylenchus. The systems CD and SCS presented the highest numbers of genus (S) of nematodes. The CD system showed the highest diversity of nematodes followed by SCS. The systems PL and SCV presented the highest values for the index of Simpson dominance, with the higher number of fitoparasitic nematodes. The system CD presented greater equitabilility of the genus of nematodes. The system CD had the highest index of maturity, followed by SCS and PL presented which showed the lowest index of maturity. The ratio of the trophic groups, dominated by fitoparasitics and bacterivores, was similar to the registered in the literature in pastures. The standard decomposition of the organic substance was differentiated in accordance with the land use cover change. The objective of the study in Chapter 2 was to evaluate the relation between the environment variables over the genus diversity and abundance of nematodes in different systems of soil management in Campo Grande - MS. This relation was evaluated with Canonic Analysis of Correspondence (CCA) in two samplings. The CCA was used to show the importance of the environmental variables in the explanation of the standard of occurrence of nematodes in the present study. It was observed that the CCA made possible the separation between the sampling systems and observed that system SPD presented greater correlations with variables such as humidity, Corg and FLL. The environmental variable that had presented greater correlation with the CD were P, FLL, FI and pH in 2004 winter samples. In 2005 summer, the diagram of the CCA presented a distinct configuration of the presented one in the first collection. The CCA was useful to organize and to analyze two complex scenarios used in this study. During both periods systems SCS and SPD had the biggest similarity with the functional groups. In the multivaried PRC was observed that it had great seasonal fluctuation in the composition of nematofauna in all the systems / Os nemat?ides s?o, possivelmente, uma das formas mais antigas de vida existente, s?o animais microsc?picos e respondem com rapidez ?s mudan?as no ambiente. Esse trabalho objetivou ampliar o conhecimento referente ?s influ?ncias dos sistemas de manejo e cobertura do solo na popula??o de nemat?ides do solo. Acredita-se que os diferentes sistemas de manejo agr?cola e coberturas vegetais atuem de forma vari?vel sobre a popula??o dos nemat?ides do solo. O estudo apresentado no Cap?tulo 1 foi conduzido a partir de um experimento de longa dura??o no campo experimental da Embrapa Gado de Corte em Campo Grande MS. Os tratamentos avaliados foram: CD - Mata original de cerrados, PL - Pastagem permanente de B. decumbens implantada em dezembro de 1993, consorciada com as leguminosas e mantida com aduba??o de manuten??o bianual, SCV - ?rea sob lavoura cont?nua de soja desde 1993, com preparo do solo convencional (uma ara??o e duas gradagens), sem cultura de inverno, SCS - ?rea sob lavoura cont?nua de soja desde 1993, preparo de solo conservacionista (uma ara??o e uma gradagem), com plantio de milheto no inverno, SPD - ?rea sob lavoura cont?nua de soja desde 1993, sem preparo de solo, com plantio direto da soja onde foi cultivado milheto no inverno. Baseando-se em caracter?sticas taxon?micas e par?metros ecol?gicos, as comunidades de nemat?ides foram analisadas em fun??o da abund?ncia total, fun??o tr?fica, padr?o de decomposi??o da mat?ria org?nica, ?ndices de diversidade de Shannon, domin?ncia de Simpson, equitabilidade de Pielou e grau de dist?rbio. Analisando os resultados, observou-se que foi identificado um total de 70 g?neros acumulados nos cinco sistemas de manejo. Os g?neros mais abundantes foram Helicotylenchus , Acrobeles, Eucephalobus, Cephalobus e Tylenchus. Os sistemas CD e SCS apresentaram as maiores riquezas de g?neros (S) de nemat?ides. O sistema CD apresentou a maior diversidade de nemat?ides seguido do sistema SCS. Os sistemas PL e SCV apresentaram os maiores valores do ?ndice de domin?ncia de Simpson, com domin?ncia de nemat?ides fitoparasitas. O sistema CD apresentou maior equitabilidade dos g?neros de nemat?ides. O sistema CD apresentou o maior ?ndice de maturidade e o sistema PL apresentou o menor ?ndice de maturidade. A propor??o dos grupos tr?ficos, dominado por fitoparasitas e bacteri?fagos, foi semelhante ao registrado em literatura em sistemas de pastagens. O padr?o de decomposi??o da mat?ria org?nica foi diferenciado de acordo com a cobertura do solo. O objetivo do estudo do Cap?tulo 2 foi avaliar a rela??o entre a composi??o de g?neros de nemat?ides e vari?veis ambientais em diferentes sistemas de manejo do. Para que esta rela??o fosse avaliada utilizou-se a An?lise de Correspond?ncia Can?nica (CCA) em duas ?pocas de coleta. A CCA foi utilizada para mostrar a import?ncia das vari?veis ambientais na explica??o do padr?o de ocorr?ncia de nemat?ides no presente estudo. Observou-se que a CCA possibilitou a separa??o entre os sistemas de manejo. O que o sistema SPD apresentou maiores correla??es com vari?veis ligadas ao maior aporte de mat?ria org?nica. As vari?veis ambientais que apresentaram maior correla??o com o sistema CD foram P, Fra??o Leve Livre, Fra??o Intra-agregado e pH na coleta realizada no inverno de 2004. A CCA foi ?til para organizar e analisar dois complexos grupos de dados utilizados neste estudo. Nas duas ?pocas avaliadas neste, os sistemas SCS e SPD mantiveram a maior similaridade quanto ? distribui??o dos grupos funcionais. Na an?lise curva de resposta principal (Principal Response Curves, PRC), observou-se que houve grande flutua??o sazonal na composi??o da nematofauna em todos os sistemas.

Reef habitats built by the tubiculous polychaete Sabellaria spinulosa have been identified as a habitat with significant conservation importance, based on their historic decline across Europe and the assumption that, like many other biogenic reef systems, S. spinulosa reefs enhance biodiversity. Despite the high conservation status of this habitat very little work has been undertaken to explore the role that S. spinulosa reefs play in marine ecosystems, or their sensitivity to anthropogenic disturbance. Observations of the reproductive ecology and population dynamics of the reef building organism indicate that S. spinulosa exhibit life-history traits typically associated with r-strategists, indicating that this species is likely to have the ability to recover quickly following most anthropogenic disturbance events. A series of surveys on S. spinulosa reefs identified at the Thanet Offshore Wind Farm site, where the extent of the reef habitat was found to have increased between the pre-construction and post construction survey despite extensive cable laying and turbine installation, corroborates these findings. Detailed investigations into the macrofauna associated with S. spinulosa reefs in the eastern English Channel revealed that S. spinulosa reefs support macrofaunal communities that are comparable to those associated with adjacent muddy sandy gravel and gravelly muddy sand in terms of species composition, taxonomic breadth and beta-diversity. A consistent enhancement in species richness, abundance and biomass was identified in samples collected from S. spinulosa reefs when compared with adjacent sedimentary deposits, as well as a corresponding reduction in the equitability of species, indicating that some macrofauna are able to exist in higher densities within this habitat. The increase in macrofaunal biomass associated with S. spinulosa reefs was found to influence the diet of demersal fish species, with some species feeding on the reef organism itself while others feed on species found in high densities on the reefs. The high abundance of juvenile flatfish associated with this habitat also suggests that S. spinulosa reefs may provide an important nursery habitat.

The combined methods of stomach content analysis and stable 15N and 13C isotope biochemistry analysis were used to investigate the trophic dynamics and feeding ecology of coastal pelagic fishes in the waters off southeastern Florida, USA. The coastal pelagic fish complex includes blackfin tuna Thunnus atlanticus, dolphinfish Coryphaena hippurus, king mackerel Scomberomorus cavalla, little tunny Euthynnus alletteratus, skipjack tuna Katsuwonus pelamis, and wahoo Acanthocybium solandri. These coastal teleosts, particularly the tunas and wahoo, are primarily targeted by recreational anglers. However, there is a shortage of available trophic and diet composition data concerning these fishes of the coastal pelagic ecosystem. Stomach and muscle tissue samples were collected from the species of various lengths over a three-year period from March 2010 and March 2013. Across all six species, teleost fishes dominated the prey with an average 64.5% by occurrence, 63.7% by number, and 89.9% by weight. There were two dominant prey families: Clupeidae and Carangidae. Dolphinfish showed the lowest diet overlap among the six species, due to the highly diverse diet. The highest diet overlap occurred between king mackerel and little tunny. The mean δ15N ranged from 8.21 ‰ (wahoo) to 13.18 ‰ (king mackerel), and the mean δ13C ranged from -18.41 ‰ (king mackerel) to -16.70 ‰ (dolphinfish). Blackfin tuna exhibited the largest δ15N range (7.22 to 13.21 ‰), as well as the largest δ13C range (-19.13 to -12.99 ‰). The δ15N and δ13C signatures in the muscle tissue showed evidence of shifts to higher trophic levels with an increase in fish size and the formation of distinct trophic groups among the coastal pelagic predators. The δ13C also suggested an inshore-offshore spatial relationship among the coastal pelagic fish. The trophic dynamics and feeding ecology data generated by this study will provide valuable baseline data for the coastal pelagic complex and future ecosystem studies.

Both temperature and terrestrial dissolved organic carbon (TDOC) have strong impacts on aquatic food web dynamics and production. Temperature affects vital rates of all organisms and terrestrial carbon has been shown to alter the dynamics of phytoplankton and bacterial production and affect the trophic structure of planktonic food webs. As climate change predictions for the Baltic Sea suggests future increases in both terrestrial carbon run-off and increases in temperature, the aim of thesis was to adopt a system-ecological approach and study effects of these abiotic variables, not only on interactions within planktonic food webs, but also on the growth and consumption rates of one of the most common zooplanktivorous fish in the Baltic Sea, the three-spined stickleback Gasterosteus aculeatus. Results showed that three-spined sticklebacks display a high degree of resilience against increasing temperatures, as both growth rates as well as consumption rates on zooplankton were high at temperatures well over 20 °C. Furthermore, it was shown that the minimal resource densities required to sustain individual and population growth, actually decreased with increasing temperatures, implying that sticklebacks around their optimum temperature for growth at 21 °C will actually have an increased scope for growth. As stickleback population densities have increased over the last decade in the Baltic Sea and are now suggested to out-compete other coastal fish species for shared zooplankton resources, the results presented in this thesis suggest that increased water temperatures would only serve to increase sticklebacks competitive advantage. As the structuring role of this small zooplanktivore on pelagic communities might be considerable, further studies investigating competitive interactions as well as patterns of population abundances are definitely warranted. TDOC was overall shown to stimulate bacterial production and the microbial food web. Because of the longer trophic pathways required to transport carbon from bacterial production to higher trophic levels, the addition of TDOC always reduced food web transfer efficiency. However, it became apparent that the full effect of TDOC additions on pelagic food webs was complex and depended heavily not only on the existing trophic structure to which the carbon was introduced, but also on ambient temperature levels. When three-spined sticklebacks were part of food webs with significant TDOC inputs, the presence of fish, indirectly, through predator release of lower trophic levels, amplified the magnitude of the effects of carbon addition on bacterial production, turning the base of the system significantly more heterotrophic, which ultimately, impacted negatively on their own production. However, when a pelagic food web containing sticklebacks was simultaneously subjected to realistic increases in temperature and TDOC concentrations, food web efficiency and fish production increased compared to present day conditions. These results were explained by a temperature dependent increased production potential of zooplankton, sustained by an increased production of heterotropic microzooplankton via TDOC additions, which lead to higher fish production. Although the increased number of trophic linkages in heterotrophic food webs should have reduced energy transfer efficiency, these negative effects seem here to have been overridden by the positive increases in zooplankton production as a result of increased temperature. These results show that heterotrophic carbon transfer can be a viable pathway to top-consumers, but also indicates that in order to understand the full effects of climate change on trophic dynamics and fish production, abiotic variables cannot be studied in isolation.

Green sea turtles in Bermuda are overgrazing the seagrasses on which later life stages are thought to specialize. I hypothesized that larger green turtles in Bermuda would display individual diet specializations during seagrass scarcity. Stable isotope methods were used to determine the diet composition of green sea turtles from the Bermuda Platform as a function of size class and in turtles captured in successive years. Individual turtles had a wide range of diets, however, the variation in diets was driven by differences among size class rather than within the size classes of larger turtles, indicating that green turtles undergo a dietary ontogenetic shift during their residency on the Bermuda Platform and no clear specialization of diets among late-stage individuals. The apparent lack of dietary specialization of larger turtles indicates that older turtles are not diversifying their diets in response to the drastic reductions in seagrass in Bermuda.

The deep-sea is the largest habitat on earth, containing over 90 percent of the world’s oceans and home to over 20,000 species. Deep-sea ecosystems are increasingly impacted by human activities including fishing and oil extraction. To understand potential impacts on deep-sea food webs, it is crucial to gather baseline data in these systems. I quantified the trophic interactions of three groups of deep-water animals across a range of trophic levels living in the northern and eastern Gulf of Mexico using stable isotope analysis. First, I propose methods for correcting δ15N values for the presence of nitrogenous metabolic waste products (e.g., urea) in muscle tissue using chemical extractions and/or species-specific mathematical normalizations. Significant differences in δ15N, %N, and C:N values as a result of extractions were observed in eight of ten shark and all three hagfish species. The δ15N values increased, but shifts in %N and C:N values were not unidirectional. Mathematical normalizations for δ15N values were successfully created for four shark and two hagfish species. I then describe the trophic interactions of three consumer assemblages. Carbon isotopic values indicate a heavy reliance on allochthonous nutrient inputs from surface waters. Nitrogen isotopic values reveal somewhat atypical taxa as top predators in the deep sea. Shark, teleost, and invertebrate species across a wide range of body sizes are feeding at a similar trophic level. This apparent lack of size structuring could be the result of a high degree of opportunistic scavenging or perhaps feeding at many trophic levels simultaneously in an oligotrophic system. There was a high degree of isotopic niche overlap among species within each consumer assemblage, perhaps the result of limited nutrient resources in the deep-sea. In general, individuals from the northern sampling stations displayed higher δ13C and δ15N values than those from the eastern sites. With the exception of a few species, there were no strong relationships between body size and isotopic values. The present study is among the first characterizations of the trophic structure of deep-sea organisms in the Gulf of Mexico and establishes system baselines for future studies describing deep-water systems and investigating anthropogenic impacts.

Body size is a fundamental structural characteristic of organisms, determining critical life history and physiological traits, and influencing population dynamics, community structure, and ecosystem function. For my dissertation, I focused on effects of body size on habitat use and diet of important coastal fish predators, as well as their influence on faunal communities in Bahamian wetlands. First, using acoustic telemetry and stable isotope analysis, I identified high variability in movement patterns and habitat use among individuals within a gray snapper (Lutjanus griseus) and schoolmaster snapper (L. apodus) population. This intrapopulation variation was not explained by body size, but by individual behavior in habitat use. Isotope values differed between individuals that moved further distances and individuals that stayed close to their home sites, suggesting movement differences were related to specific patterns of foraging behavior. Subsequently, while investigating diet of schoolmaster snapper over a two-year period using stomach content and stable isotope analyses, I also found intrapopulation diet variation, mostly explained by differences in size class, individual behavior and temporal variability. I then developed a hypothesis-testing framework examining intrapopulation niche variation between size classes using stable isotopes. This framework can serve as baseline to categorize taxonomic or functional groupings into specific niche shift scenarios, as well as to help elucidate underlying mechanisms causing niche shifts in certain size classes. Finally, I examined the effect of different-sized fish predators on epifaunal community structure in shallow seagrass beds using exclusion experiments at two spatial scales. Overall, I found that predator effects were rather weak, with predator size and spatial scale having no impact on the community. Yet, I also found some evidence of strong interactions on particular common snapper prey. As Bahamian wetlands are increasingly threatened by human activities (e.g., overexploitation, habitat degradation), an enhanced knowledge of the ecology of organisms inhabiting these systems is crucial for developing appropriate conservation and management strategies. My dissertation research contributed to this effort by providing critical information about the resource use of important Bahamian fish predators, as well as their effect on faunal seagrass communities.