The aim of this study was to establish whether the asymmetry of bilateral elements of the skeleton is useful for the reassociation of paired elements in the analysis of commingled skeletal remains; particularly addressing the forensic scenario of Chilean Human Rights cases. The asymmetry of the appendicular skeleton of the modern adult Chilean population was investigated in its morphological aspect, using both traditional anthropometry and geometric morphometrics. The sample was selected from the Colección Subactual de Santiago, housed in the University of Chile, Santiago, Chile, with N= 131 (69 males and 62 females). The traditional metric analysis of size and the geometric morphometric analysis of shape showed that there was a significant difference between sides in both sexes with a strong component of directional asymmetry. Mean metrics and ranges of asymmetry were established, contributing to the characterization of this population. A method to pair match elements from commingled settings, which is a combination of metric ranges of asymmetry and principal component analysis of shape variables, was created resulting in 95% accuracy when pair matching the humerus, radius, femur and tibia. This constitutes an important contribution to the analysis of shape in forensic contexts due to its strong mathematical component, objectivity and repeatability.

A traditional species concept of diatoms is based on morphological characters of their siliceous boxes. A multidisciplinary approach to defining species of diatoms has revealed the hidden diversity within the traditionally defined species. But the newly recognized species are morphological variable and indistinguishable by the naked eye. Recent studies showed that different morphotypes show different ecological preferences. This master thesis focuses on the morphology of natural populations of the diatom species complex Frustulia rhomboides which contains both the traditional and the cryptic species, and it engages how the morphology reflects the effects of environmental conditions. Landmark methods of geometric morphometrics were used in order to analyze the morphological variability of diatom frustules of this species complex within various peat bog habitats in the Czech Republic. Selected environmental parameters were measured and the species composition of diatom communities present in the samples was investigated. These data were used to analyze the relationship between the environmental conditions and the cell shape variability within the complex. The analysis revealed the main trends of morphological variability related to different environmental conditions. Two morphotypes characteristic...

Os padrões de conformação craniana resultantes da seleção das raças durante o processo de domesticação do cão evidenciam as relações entre as diversas partes que compõe o crânio. As raças braquicefálicas apresentam as maiores variações na forma quando comparadas aos mesaticefálicos, padrão este já descrito de forma qualitativa na literatura. Neste estudo, por meio da morfometria geométrica, as diferentes regiões do crânio e mandíbula de exemplares pertencentes aos dois grupos foram analisadas quantitativamente. Foram selecionados 52 crânios e 57 pontos anatômicos, digitalizados em três dimensões representando a forma destes crânios. As coordenadas foram utilizadas em análises multivariadas, buscando a caracterização quantitativa das diferenças na forma entre os grupos. Para o estudo da assimetria, foram analisados o crânio e mandíbula separadamente: regiões de contato da dentição com o crânio e com a mandíbula; caixa craniana; fossa mandibular; processo condilar; arco zigomático e processo coronóide. Para a caracterização dos padrões de covariância, as regiões de interesse foram analisadas aos pares: contato da dentição com o crânio e a com a mandíbula; fossa mandibular e processo condilar; arco zigomático e processo coronóide; dentes 4o pré-molar superior e 1o molar inferior; crânio e mandíbula. As análises estatísticas mostraram diferenças significativas entre os dois grupos, braquicefálicos e mesaticefálicos, com assimetrias nas regiões do crânio e no contato da dentição com o crânio e com a mandíbula. Na análise do índice de covariância houve diferença estatisticamente significativa entre os dois grupos no contato da dentição com o crânio e com a mandíbula; crânio e mandíbula; relação dos dentes 4o pré-molar superior e 1o molar inferior. Concluiu-se que as principais diferenças estão concentradas na região rostral do crânio e mandíbula, nas regiões de contato da dentição nestas regiões e entre o 4o pré-molar superior e 1o molar inferior. Estes resultados sugerem que as maiores variações no crânio dos braquicefálicos estão concentradas nas regiões que participam conjuntamente da mastigação, sem diferenças na parte caudal do sincrânio. / The observed variation in skull conformation of the breeds of domestic dogs is the result of selection during domestication process and it provide information about the patters of interaction among the different parts that constitutes this structure. Qualitative studies published in the literature shown that brachycephalic breeds have the highest variability in skull shape when compared to mesaticephalics. In this study, different regions of the skull of specimens belonging to both groups were analyzed quantitatively, using geometric morphometric techniques. Fifty-two skulls and 57 landmarks were selected and digitalized to perform a 3-D reconstruction of the skulls. Multivariated analyses over the coordinates were used to analize and quantify shape differences between the two groups. Patterns of asymmetry were explored for both, the cranium and mandible, analyzing separately six regions of interest: teeth contact between upper and lower jaw; braincase; mandibular fossae; condilar processes; zygomatic arches and coronoid processes. To evaluate covariance patterns the regions were analyzed in pairs: teeth contact between upper and lower jaw; mandibular fossae and condilar process; zygomatic arch and coronoid process; upper fourth premolar and lower first molar; cranium and mandible. The statistical analyses indicated significant differences between the brachycephalic and mesaticephalic groups for asymmetry at the different regions of the skull and teeth contact between upper and lower jaw. For the covariance patterns there is statistical significant difference for teeth occlusion between upper and lower jaw; skull and jaw; upper fourth premolar and lower first molar relationship. In conclusion, the main differences are located in the rostrum contact between upper and lower rostral teeth and upper fourth premolar and lower first molar. These results suggest that the highest shape variability in the skull of braquicephalics dogs is concentrated in structures that are used in the mastication, without differences at the caudal region of the jaws.

Vários estudos sobre ontogenia e assimetria foram e vêm sendo realizados com cetáceos odontocetos através da utilização da morfometria convencional. Frequentemente compara-se o tamanho de estruturas do sistema respiratório de ambos os lados do crânio para avaliar a assimetria de tamanho e analisa-se o aumento de tamanho do corpo com a idade para avaliar ontogenia. Porém, através da morfometria convencional nem sempre é possível descrever ou representar a variabilidade de forma dos organismos, sendo que informações sobre a forma craniana dos odontocetos são bastante escassas. A morfometria geométrica é uma técnica que vem sendo amplamente utilizada em estudos de comparação da forma dos organismos, a qual leva em consideração o caráter geométrico das formas biológicas e analisa estatisticamente sua variação. Além disso, possibilita a realização de descrições independentes de forma e tamanho, o que permite que os mesmos sejam analisados separadamente. Sendo assim, este estudo se propôs a investigar as alterações ontogenéticas na forma e tamanho do crânio do boto-cinza, Sotalia guianensis, buscando alterações cranianas entre indivíduos de diferentes classes etárias, além de verificar a existência e analisar a assimetria direcional na forma e tamanho craniano para esta espécie. Para isso, os crânios foram digitalizados através de um braço digitalizador e depois de um tratamento geométrico as configurações geradas foram analisadas estatisticamente, a partir dos seus componentes de forma e tamanho. Foi observada assimetria de tamanho e forma para muitas das estruturas cranianas estudadas, notando-se diferenças com relação à assimetria entre as subunidades de desenvolvimento do crânio. Com relação à ontogenia, verificou-se um padrão semelhante para a alteração da forma e do tamanho com a idade, evidenciando que, tanto a forma como o tamanho craniano, se estabilizam por volta dos oito anos de idade. / Several studies exploring the ontogeny and asymmetry involving the skull and skeleton of the species of the Suborder Odontoceti have been performed using traditional morphometric techniques. Ontogenetic studies are usually based on the relationship between body size and age, while those focusing on the existence and degree of asymmetry compare the size of skull elements related to the respiratory tract. However, traditional morphometrics can not describe or represent adequately the variability of shape between organisms and therefore information about shape of dolphin skulls are very scarce. Geometric Morphometrics is a toolbox of techniques that is been widely applied in studies comparing the shape of organisms taking into consideration the biological shapes and analyzing their variation statistically. In addition, this technique allows to independently describe both shape and size separately, as well as exploring their relationship. The main objective of this study is to investigate the changes in skull shape and size during the ontogeny for the estuarine dolphin, Sotalia guianensis, characterizing the shape of the skull among different age groups. The second goal is to verify and analyze directional asymmetry in skull size and shape for this species. Dolphin skulls were scanned using a Microscribe-3D digitizer, statistically analyzing size and shape of the configurations created after translating, rotating and rescaling the original variables. Asymmetry in size and shape was detected for some cranial structures. There were also differences in asymmetry degree between the development subunits of the skull. For the ontogenetic trajectory it was detected a similar pattern of changes in shape and in size with age, in which both are stabilizing around eight years old for this species.

Made available in DSpace on 2017-07-21T19:59:55Z (GMT). No. of bitstreams: 1 Jonathan Pena Castro.pdf: 3378425 bytes, checksum: 726a329ba31e1d12d715441e9de01e5a (MD5) Previous issue date: 2012-02-08 / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / The species complex Astyanax scabripinnis are composed by fish with wide geographic distribution. Their populations are often isolated in small streams, separated by thousands of years, making it a very interesting system to study evolution. The use of different markers is crucial, since they allow inferences on the identification of individuals and therefore the study of populations. Thus, three populations isolated from each other of Campos do Jordão - SP, and two of Maringá - PR were analyzed by geometric morphometrics, correlating with data from presence / absence of B chromosomes, karyotypic and cytogenetic data, and reproductive data. Canonical variate analysis (CVA) showed that there are significant differences between populations (p <0.0001). The discriminant function analysis (DFA) between males and females showed intra and interpopulational sexual dimorphism. The separate CVA of males and females from each population also showed significant difference between them. All populations have 2n = 50 chromosomes arranged in 6m+22sm+10st+12a, the only exception was a population from Maringá, where there was 2n = 48 chromosomes, differentiated in 8m+26sm+6st+8a. B chromosome were only found in the population of Campos do Jordão (1850m altitude), confirming previous studies. In a morphometric analysis separated for individuals with and without B chromosomes, the CVA showed difference in body shape. Individuals with B chromosomes have the ventral anterior region less dilated than those without of this chromosomal element. The CVA also showed differences in body shape between 2n = 50 and 2n = 48 populations in Maringa. The fluorescent in situ hybridization showed differences between markers 5S rDNA and 18S rDNA for all populations. The data suggest pre zygotic reproductive isolation between Campos do Jordao populations. The analysis of all data indicates that the populations are differentiated from each other, indicating adaptation to different environments. This reinforces, among other factors, that these populations should represent different species within the species complex A. scabripinnis, followed by independent evolutionary pathways. / O complexo de espécies Astyanax scabripinnis corresponde a peixes com ampla distribuição geográfica. Suas populações encontram-se geralmente isoladas em pequenos riachos, separadas por milhares de anos, tornando esses animais interessantes ao estudo evolutivo. O uso de diferentes marcadores é fundamental, uma vez que permitem inferências na identificação dos indivíduos e consequentemente o estudo das populações. Dessa maneira, três populações isoladas entre si de Campos do Jordão - SP, e duas de Maringá - PR foram analisadas por morfometria geométrica, correlacionando com dados de presença/ausência de cromossomos B, dados cariotípicos e citogenéticos, além de dados reprodutivos. A análise de variáveis canônicas (CVA) mostrou que há diferenças significativas entre as populações (p<0,0001). A análise de função discriminante (DFA) entre macho e fêmea mostrou que há dimorfismo sexual intra e interpopulacional. A CVA separada para machos e fêmeas de cada população também mostrou diferença significativa entre elas. Todas as populações possuem 2n=50 cromossomos organizados em 6m+22sm+10st+12a, a exceção de apenas uma população de Maringá onde foi observado um cariomorfo com 2n=48 cromossomos, diferenciados em 8m+26sm+6st+8a. Não foi encontrada a presença de cromossomos B apenas na população de Campos do Jordão (662m de altitude), corroborando estudos anteriores. Na análise morfométrica associada a indivíduos com e sem cromossomos B, a CVA mostrou que há diferença na forma do corpo, sendo que os indivíduos com cromossomos B possuem a região ventral anterior menos dilatada dos que não possuem este elemento cromossômico. A CVA também apontou diferença na forma do corpo entre o cariomorfo 2n=50 e o 2n=48, em Maringá. A hibridação in situ fluorescente mostrou diferença entre os marcadores de rDNA 18S e rDNA 5S para todas as populações. Os dados reprodutivos sugerem isolamento pré zigótico entre as populações de Campos do Jordão. A análise de todos os dados aponta que as populações encontram-se diferenciadas entre si, indicando indivíduos adaptados a ambientes distintos. Isso reforça, entre outros fatores, que essas populações devem representar espécies diferentes, dentro do complexo de espécies A. scabripinnis, seguindo por caminhos evolutivos independentes.

Analysing variation of skull shape in wild populations can give us an insight into evolutionary processes. By looking into patterns of morphological variation within populations, we can extrapolate and make assumptions on the patterns of variation on higher taxonomic levels. In this thesis, I collected data on skull shape of a wild population of Soay sheep using geometric morphometrics methods. I applied a multitude of quantitative genetics and geometric morphometrics methods to explore the factors behind the evolution of skull shape. I analysed several aspects of skull shape, including integration and modularity, predicted response to hypothetical selection, estimates of natural selection, presence of heterochrony, and fluctuating asymmetry (FA) in an ecological and genetic point of view. I found low levels of integration in the Soay sheep skull, along with the presence of two modules: face and neurocranium. Both the levels of integration and the pattern of modularity were found across different origins of variation, individual, genetic and developmental (FA), indicating a strong correspondence between levels. Although genetic integration is not strong, I found that most of hypothetical selection regimes result in as much correlated selection as direct selection responses. But the nose region has shown to be quite independent from the rest of the skull, with a retraction of the nose causing almost no correlated changes. Selection on skull shape is comparatively strong in the Soay sheep. The skull shape selected for in males differs from the shape selected in females. Males are selected to have wider nasal bones along with longer, flatter braincase, whereas females are selected towards narrower nasal bones, along with smaller braincases. But selection is not the only factor influencing changes in skull shape. Changes in temperature along the past 30 years are causing a change in developmental timing in Soay sheep, causing a decrease in overall body size in the population. And I found that skull shape is also being affected, thus indicating that this population might be undergoing heterochronic processes. Finally, I found that factors such as vegetation quality, parasite load and breeding success are related to FA levels, whereas population density and climate are not. I also found no significant heritability nor dominance in FA of skull shape. Overall, this thesis certainly contributes to the understanding of evolution of skull shape in natural populations. By successfully combining quantitative genetics and geometric morphometrics methods, I was able to tackle questions about the evolution of complex shapes, and give valuable insights into this still underexplored field.

As cobras são um grupo de vertebrados extremamente bem sucedido. Apesar da aparente simplicidade, elas conseguiram ocupar uma grande diversidade de habitats. O esqueleto axial das serpentes apresenta relação com vários aspectos da vida que puderam ter tido influência direta em seu sucesso evolutivo. Além disso, a forma dos elementos vertebrais possui valor taxonômico, fato que desperta particular interesse, visto que a maior parte do registro fóssil deste grupo é constituído por elementos vertebrais desarticulados. A morfometria geométrica utiliza informações sobre a posição de pontos em duas ou três dimensões, localizados sobre estruturas anatômicas para análise estatística da variação da forma. Esse conjunto de técnicas tem se mostrado eficaz em avaliar variações da forma que não seriam diagnosticadas por métodos tradicionais. O presente trabalho buscou avaliar as vértebras do esqueleto pré-cloacal de Serpentes no contexto da morfometria geométrica, considerando as influências ecológicas e filogenéticas sob estas estruturas, e investigando ainda a utilidade taxonômica da forma vertebral. Os resultados apresentados aqui sugerem a existência de uma padronização do esqueleto axial de serpentes que é conservada ao longo da história evolutiva desse grupo. Análises ecomorfológicas demonstram que a forma vertebral é fortemente influenciada por hábitos de vida como fossorialidade e constrição. A despeito da ausência de sinal filogenético, as análises de classificação de elementos vertebrais dissociados demonstram que a forma vertebral pode ser utilizada para a diagnose de vértebras isoladas. Esses resultados reforçam a necessidade de realização de análises de variação longitudinal para a identificação correta de material fóssil referente a este grupo. / Snakes are an extremely successful group of vertebrates. Despite their apparent morphological simplicity, they managed to occupy a great diversity of habitats. The axial skeleton of snakes has relationships with various aspects of their life history that could have had direct influence in the evolutionary success of these animals. Furthermore, the shape of the vertebrae is recognized as being of taxonomic value, a fact that elicits a special interest, since the majority of the fossil record of this group is composed of disarticulated vertebral elements. Geometric morphometrics methods use information about the position of landmarks in two or three dimensions, placed over anatomical structures for statistical analyses of shape variation. This group of techniques has been shown to identify shape variations that would not be diagnosed through traditional methods. The present work sought to evaluate the vertebrae of the pre-cloacal skeleton of Serpentes in the context of geometric morphometrics, evaluating the influences of ecology and phylogeny over the shape of these structures, and also investigating the taxonomic usefulness of vertebral shape. Results presented here suggest the existence of a patterning of the axial skeleton that is conserved throughout the evolutionary history of the group. An ecomorphological analysis demonstrates that the vertebral shape is highly influenced by life-history traits such as fossoriality and constriction. Despite the absence of phylogenetic signal, analyzes of classification of dissociated vertebral elements show that the vertebral shape can be used to diagnose isolated vertebrae. These results reiterate the necessity of performing studies of longitudinal variation in order to correctly identify fossil material associated with this group.

Despite being separated by millions of years of evolution, black bears (Ursus americanus) and brown bears (Ursus arctos) can be difficult to distinguish based on skeletal and dental material alone. Complicating matters, some Late Pleistocene U. americanus are significantly larger in size than their modern relatives, obscuring the identification of the two bears. In the past, fossil bears have been identified based on differences in dental morphology or size. This study used geometric morphometrics to look at overall differences in cranial shape and used step-wise discriminant analysis to identify specific characters that distinguish cranial morphology between black and brown bears. Such differences could prove important in identifying fossil bears when crania are present but teeth are missing. Furthermore, being able to properly identify U. arctos and U. americanus crania is important in understanding evolutionary and ecological distinctions among both fossil and modern bears. Principal components, discriminant, and thin plate spline analyses indicated a clear morphological separation between the crania of U. americanus and U. arctos and highlighted key identifying features including a more convex forehead and a narrower, more elongate rostrum in U. arctos than U. americanus.

Background: Nonsyndromic cleft lip and palate (NSCL/P) is a complex trait caused by genetic and environmental factors that interact producing a wide spectrum of orofacial malformations, including dental anomalies. The underlying genetic etiology that accounts for phenotypic variation in affected families is poorly understood. Purpose: The purpose of this study is to utilize shape and microesthetic analysis to characterize the maxillary anterior dentition in unaffected parents of children with NSCL/P (cases) compared to control adults with no CL/P history to identify dental morphology features that are part of the NSCL/P phenotypic spectrum and can therefore be used in refining NSCL/P phenotypes and identifying genetic risk factors. Methods: Individuals were recruited from 5 sites including Iowa, Texas, Hungary, the Philippines, and Pittsburg, PA. From a total of 3202 individuals, 420 quailified after strict selective criteria. Digital photographs from 198 cases and 222 controls were analyzed using linear metrics and 2D-coordinate landmark-based geometric morphometrics (GM) to compare dental esthetics and deviations from golden proportions." Differences in central incisor and connector height proportions were evaluated using paired T-tests. Anterior tooth shapes were examined using GM techniques. Results: Three shape differences were found to be possible predictors of genetic risk. These included shorter maxillary anterior teeth overall, square shaped lateral incisors on the left side, as well as lateral incisors and canines with long axes angled inward toward the midline on the left side. Both the case and control groups were found to be significantly different than the proposed ideal values of tooth proportions. Conclusions: Significant differences in anterior dental morphology were found between cases and controls, with controls displaying a more ideal dental morphology than cases for most evaluated measures. The identification of these distinct dental features in carriers of NSCL/P genetic risk factors further characterizes the phenotypic spectrum of NSCL/P which can enhance the power of genetic studies.

Although the evolutionary implications of natural differences in flow regime have been well-studied, the evolutionary implications of anthropogenic modification of flow regime are not well understood. To begin to characterize the evolutionary consequences of dam construction for small stream fishes, I conducted four related studies focused on the blacktail shiner (Cyprinella venusta). First, to characterize natural variation in body shape related to stream characteristics, I assessed the extent to which body shape corresponded to three environmental factors, phylogeny, and body size. Morphology was predominantly associated with variation in mean annual runoff; phylogeny was also a strong predictor of morphology. In contrast to previous studies that emphasize the importance of water velocity, these findings indicate that morphological variation is tightly linked to more complex aspects of hydrology and evolutionary history. Second, to initially characterize variation in body shape associated with dam construction, I compared the body shape of C. venusta from pairs of river and reservoir sites. River populations differ from reservoir populations in several aspects of morphology, demonstrating that reservoir characteristics drive changes in the morphology fish populations. Third, to characterize the pace and trajectory of phenotypic responses to impoundment, I examined a chronosequence of museum specimens originating from a reservoir and nearby stream. The rate of change in larger individuals was greatest in the first 15 years following impoundment, with less pronounced shifts in smaller individuals and no shift in the morphology of stream individuals. These results indicate that morphological responses to impoundment are decadal-scale and attenuate. Fourth, to determine if impoundment-related morphological shifts are genetically determined and are functionally significant, I conducted swimming performance trials with common garden C. venusta originating from reservoir and stream parents. Common garden juveniles exhibited differences in morphology similar to those between wild-caught individuals, indicating that morphological divergence following impoundment is an outcome of rapid evolutionary change. Offspring did not differ in swimming performance, suggesting that morphological evolution may be driven by reproductive or trophic shifts following impoundment. Together, these studies demonstrate that impoundment is a potent evolutionary force on fishes, but the mechanisms by which it does so remain relatively unknown. / acase@tulane.edu