Il a été montré que la consommation de Lactobacillus pouvait avoir des conséquences sur le poids de l’hôte, et ce, en fonction de la souche inoculée. Nous avons voulu comprendre le mécanisme par lequel ces microorganismes prolifèrent dans le tube digestif et induisent un changement de poids. Nous avons exploré la production de bactériocines permettant aux souches de Lactobacillus de croître au détriment des autres micro-organismes. Nous avons constitué une base de données de bactériocines nommée BUR et recherché les bactériocines dans les génomes de bactéries du tube digestif humain. Nous avons observé une abondance de bactériocines dans les génomes des bactéries du tube digestif, majoritairement dans les Firmicutes. Aussi, nous avons approfondi l’étude du profil métabolique des souches de Lactobacillus par une approche génomique et dans une analyse in vitro. Nous avons constaté que les souches de Lactobacillus dont la consommation induit une perte de poids possèdent des enzymes qui empêchent l'obésité en réduisant les niveaux de glucose dans le sang, les niveaux de triacylglycérols sériques, la masse corporelle et l'accumulation de graisse, tandis que les génomes des souches dont la consommation induit un gain de poids codent pour plusieurs enzymes favorisant la production de fructose, et mobilisent l'énergie et le carbone stocké dans les acides gras. De ce fait, nous pouvons dire que les espèces de Lactobacillus jouent un rôle important dans la digestion des nutriments, avec un effet direct sur le changement de poids. / It has been shown that Lactobacillus consumption could affect the weight of the host, and led consequently to significant weight gain or loss, depending on the strain. We wanted to understand the mechanism by which these microorganisms induce weight change. We explored the various known mechanisms, including the production of bacteriocins, allowing Lactobacillus strains to grow at the expense of other microorganisms. We established a bacteriocin database, named BUR, and search for bacteriocins in the genomes of human gut bacteria. We observed an abundance of bacteriocins in the genomes of bacteria in the digestive tract, predominantly in Firmicutes. We also have deepened the study of the metabolic profile of Lactobacillus strains, both by a genomic approach and in an in vitro assay, to better understand the pathophysiology of obesity. We have found that Lactobacillus strains whose consumption induces weight loss possess enzymes which prevent obesity by reducing glucose levels in blood, serum triacylglycerols levels, body weight and the accumulation of fat, whereas the genomes of strains whose consumption leads to weight gain encode several enzymes promoting the production of fructose and mobilize energy and the carbon stored in the fatty acids. Therefore, we can say that Lactobacillus species are important in the digestion of nutrients and can have a great influence on carbohydrate and lipid metabolism, with direct effect on weight change.

Les défauts d’odeurs, liés à l’accumulation d’androsténone et de scatol dans le tissu adipeux, sont le frein majeur à l’élevage des porcs mâles entiers. L’androsténone est produite par les testicules et le scatol dans le colon. En dehors de la génétique et de l’alimentation, les facteurs de variation ont été peu étudiés.La thèse aborde le problème des odeurs sexuelles sous quatre angles : 1) estimer l’héritabilité des composés odorants du tissu gras et leurs corrélations génétiques avec des indicateurs de santé, du développement sexuel et de l’agressivité ; 2) étudier l’effet de la dominance sur ces composés ; 3) déterminer l’impact d’un état inflammatoire chronique modéré sur le développement sexuel et la concentration en androsténone ; 4) rechercher les effets de conditions d’hygiène contrastées sur la teneur en scatol et analyser l’implication du microbiote intestinalNos résultats confirment l’héritabilité forte des teneurs en composés odorants mais les corrélations génétiques avec les paramètres de santé sont faibles. Une sélection pour réduire la concentration plasmatique en œstradiol et testostérone permettrait de réduire à la fois les teneurs en composés odorants et l’agressivité des porcs. Les porcs de rang de dominance élevé ont une teneur en androsténone supérieure dans le gras. Un état inflammatoire chronique modéré ne semble pas affecter la teneur en androsténone. Enfin, la dégradation de l’hygiène du logement augmente fortement la concentration en scatol, probablement via des changements de composition du microbiote intestinal. / Boar taint, due to the accumulation of androstenone and skatole in the fat tissue, is the major constraint to the production of entire male pigs. Androstenone is produced by the testes. Its synthesis increases during pubertal development. Skatole is produced in the hind gut. Its hepatic catabolism is inhibited by sexual steroids. Apart from genetics and feeding, the factors affecting boar taint have been little studied.The current thesis approaches four aspects of the boar taint problem: 1) the heritability of the fat content of odorous compounds in the fat tissue and their genetic correlations with indicators of health, sexual development and aggressiveness; 2) to study the effect of dominance on the fat content of boar taint compounds; 3) to determine the influence of a moderate chronic inflammatory status on the sexual development and the fat concentration in androstenone; 4) to evaluate the effect of contrasting hygiene conditions on the fat concentration in skatole and, to analyOur results confirm the high heritability of the fat concentrations of boar taint compounds but their genetic correlations with health indicators are low. A selection to decrease the plasma concentrations in estradiol and testosterone should decrease both boar taint compound concentrations and aggressiveness of boars. Boars with a high dominance rank have a higher fat concentration in androstenone. Lastly, the degradation of the housing hygiene conditions strongly increases the concentration in skatole, probably through modifications in gut microbiota composition

Les maladies psychiatriques présentent de fortes comorbidités avec des désordres gastrointestinaux, ce qui suggère l’existence de bases physiopathologiques communes. Une littérature abondante démontre que l’adversité précoce (infection, stress) augmente la vulnérabilité aux désordres psychiatriques à l’âge adulte. Chez le rongeur, le modèle de séparation maternelle induit chez la descendance adulte des comportements hyperanxieux associés à une hypersensibilité au stress, ainsi que des dysfonctionnements de la sphère gastrointestinale. De plus, des études récentes rapportent une hyperperméabilité de la barrière intestinale chez les ratons soumis au stress de séparation, un effet conduisant potentiellement à une dysbiose et une perturbation de la communication intestin-cerveau. Le but de ma thèse était donc d’étudier le rôle de l’axe intestin-cerveau dans la mise en place des effets à long terme du stress précoce. Nos travaux récents ont montré que certains effets à long-terme de la séparation maternelle peuvent être atténués par l’exposition des mères à un régime hyperlipidique. Dans un premier temps, nous avons testé les effets du régime hyperlipidique maternel sur le cerveau et l’intestin de ratons soumis à la séparation maternelle. Nos résultats montrent que le régime maternel hyperlipidique protège de l’augmentation de la permeabilité intestinale induite par le stress. Nous avons ensuite testé le rôle causal de la perméabilité intestinale sur les comportements émotionnels à travers une approche pharmacologique et une approche génétique. Nous rapportons 1) que la restauration de la fonction barrière de l’intestin atténue certains effets de la séparation maternelle et 2) qu’une hyperperméabilité intestinale chez des souris transgéniques non soumises à un stress produit des effets similaires à ceux de la séparation maternelle. Enfin, nous avons examiné les effets d’une adversité précoce multifactorielle sur le cerveau et l’intestin (perméabilité et microbiote) chez la descendance adulte mâle et femelle dans un modèle combinant infection prénatale et séparation maternelle. Nos résultats mettent en évidence un effet sexe très marqué sur les phénotypes comportements et intestinaux. D’autres études sont nécessaires pour identifier les mécanismes sous-tendant les effets de la perméabilité et la dysbiose intestinale sur la vulnérabilité émotionnelle associée au stress précoce. / Early-life adversity is a main risk factor for psychiatric disorders at adulthood; however the mechanisms underlying the programming effect of stress during development are still unknown. In rodents, chronic maternal separation has long lasting effects in adult offspring, including hyper-anxiety and hyper-responsiveness to a novel stress, along with gastrointestinal dysfunctions. Moreover, recent studies report gut barrier hyper-permeability in rat pups submitted to maternal separation, an effect that could potentially lead to dysbiosis and altered gut-brain communication. Therefore, the aim of my PhD was to unravel the role of the gut-brain axis in the neurobehavioral effects of early-life stress. We recently reported that some neural, behavioral and endocrine alterations associated with maternal separation in rats could be prevented by maternal exposure to a high-fat diet. We first addressed the effects of maternal high-fat diet on brain and gut during development in the maternal separation model. We show that maternal high-fat diet prevents the stress-induced decrease in spine density and altered dendritic morphology in the medial prefrontal cortex. Moreover, maternal high-fat diet also attenuates the exacerbated intestinal permeability associated with maternal separation. To explore a potential causal impact of gut leakiness on brain functions, we then examined the impact of pharmacological and genetic manipulations of intestinal permeability on brain and behavior. We report 1) that restoration of gut barrier function attenuates some of the behavioral alterations associated with maternal separation and 2) that chronic gut leakiness in naive adult transgenic mice recapitulates the effects of maternal separation. Finally, we examined the effects of multifactorial early-life adversity on behavior, gut function and microbiota composition in males and females using a combination of prenatal inflammation and maternal separation in mice. At adulthood, offspring exposed to early adversity displayed sex-specific behavioral (social behavior deficits in males and increased anxiety in females) and intestinal phenotypes. In conclusion, our work demonstrates an impact of gut dysfunctions, in particular gut leakiness, on the emergence of emotional alterations. Further studies are needed to unravel the role of the gut dysbiosis in the expression of the behavioral phenotypes associated with early-life adversity.

Ce travail de thèse a pour but de modéliser la capacité de dégradation des polysaccharides non digestibles par le microbiote intestinal humain. Nous exploitons pour cela des données métagénomiques. Il s'agit de données d'abondances de séquences de nucléotides dans 1408 échantillons dont les fonctions métaboliques sont assignées par annotation contre une base de données. Les séquences sont annotées par des marqueurs fonctionnels. Après une étape de sélection manuelle de 86 marqueurs fonctionnels pertinents à l'activité de métabolisation des polysaccharides, nous étudions leurs variations d'abondances parmi les échantillons métagénomiques.Nous proposons une approche de modélisation écologique du microbiote intestinal humain et considérons principalement la sélection fonctionnelle intense de cet écosystème pour faire l'hypothèse que des regroupements identiques de fonctions métaboliques sont présents en proportions différentes dans tous les microbiotes intestinaux humains. Nous proposons le terme d'assemblage fonctionnel qui rend compte de la co-occurrence spatiale et temporelle d'un groupement de fonctions. Ces assemblages sont en pratiques déterminés par leur composition en marqueurs fonctionnels, et peuvent s'interpréter comme une combinaison de traits fonctionnels agrégés au niveau des microorganismes composant l'assemblage.Les assemblages fonctionnels sont inférés par le biais d'une factorisation en matrice positive aussi nommée NMF de l'anglais Non-Negative Matrix Factorisation. Cette méthode permet de déterminer les assemblages fonctionnels, à la fois concernant leur composition et à la fois concernant leur abondance dans chacun des 1408 échantillons. Nous exploitons par ailleurs une information métabolique provenant de 190 génomes microbiens et de la bibliographie qui permet de préciser la composition de ces assemblages fonctionnels. Cette information se traduit sous forme d'une contrainte.Nous trouvons 4 assemblages en considérant un consensus entre différents critères. L'utilisation de l'information métabolique nous permet d'interpréter biologiquement ces assemblages. Les métadonnées associées aux 1408 échantillons nous permettent d'observer un comportement différent pour les échantillons provenant d'individus atteints de la maladie de Crohn. Nous validons cette observation sur des données extérieures.Nous avons proposé une approche réductionniste permettant de représenter un processus métabolique important à l'échelle du microbiote. Nous trouvons un nombre réduit de 4 assemblages fonctionnels qui sont biologiquement vraisemblables et permettent de bien approcher les 1408 échantillons métagénomiques. / The purpose of this work of thesis is to model the capacity of degradation of non-digestible polysaccharides by the human intestinal microbiote. To this end we exploit metagenomic data. We use abundances of nucleotide sequences in 1408 samples whose metabolic function are assigned by annotation against a database. The sequences are annotated with functional markers. Upon manual selection of 86 functional markers relevant to the activity of metabolisation of polysaccharides, we their abundances variation among the metagenomic samples are studied.We propose an ecological approach in modeling the human intestinal microbiote. We consider the intense functional selection of this ecosystem and assume that identical cluster of metabolic functions can be found in different proportions in every human gut microbiota. We propose the term of functional assembly as to account for spacial and temporal co-occurence of functional cluster. In practice, theses assemblies are determined by their composition and can be interpreted as combinations of functional traits aggregated at the levels of the cluster of microorganisms composing each assembly. Functional assemblies are inferred by the means of Non-Negative Matrix Factorization (NMF). This method allows to determine the composition of functional assemblies and their abundance in each of the 1408 metagenomic sample.Furthermore, we exploit metabolic information from bibliographic resources and 190 microbial genomes in order to specify the composition of these functional assemblies. This information is translated in the form of a constraint.We find 4 assemblies by considering a consensus between various criteria. The use of metabolic information allow to interpret theses assemblies biologically. By exploiting the metadata of the 1408 samples, we observe a different behaviour for the samples coming from individuals suffering from Crohn disease. We validate this observation on external data.We proposed a reductionistic approach allowing to represent an important metabolic process at the level of the microbiota. We find a small number of 4 functional assemblies which are biologically likely and approach well the 1408 metagenomic samples.

<p>Vitamin E is a natural lipophilic antioxidant contains eight structurally related forms, i.e., α-, β-, γ-, δ-tocopherols (αT, βT, γT, and δT) and corresponding tocotrienols. Recent research indicates that vitamin E forms are differentially metabolized to various carboxychromanols. Some these vitamin E metabolites have been shown to exhibit strong anti-inflammatory and anticancer effects, yet little is known about their bioavailability. Without this knowledge, it is impossible to assess the role of vitamin E metabolism in biological functions of vitamin E forms and their protective effects on chronic diseases. While αT and γT appear to improved gut health, the underlying mechanisms are not well understood. Furthermore, specific forms of vitamin E such as γT have been reported to have cancer-preventing effects, but their anticancer efficacy is relatively modest. For these reasons, this dissertation focused on the characterization of the pharmacokinetic formation of vitamin E metabolites after supplementation, and the investigation of the underlying mechanisms of the protective effect of vitamin E forms, αT and γT, on gut health, as well as anticancer efficacy of the combination of aspirin and γT on carcinogen-induced colon tumorigenesis.</p><p><br></p><p>The first project focuses on characterizing the pharmacokinetic formation of vitamin E metabolites after single dose supplementation of γ-tocopherol-rich mixed tocopherol (γTmT) and δ-tocotrienol (δTE). With our recently developed LC/MS/MS assay for quantifying vitamin E metabolites, we can simultaneously quantify the level of short-chain, long-chain, and sulfated carboxychromanols in plasma, urine, and fecal samples of supplemented animals. In this study, we investigated the pharmacokinetics including excretion of vitamin E forms and the formation of their metabolites after a single dose intragastric administration of tocopherols and tocotrienols in rats. We also measured vitamin E metabolites in the serum obtained from healthy humans after gT supplementation. In the plasma of rat, the pharmacokinetic profiles of γT and δTE are described as the following: γT, Cmax = 25.6 ± 9.1 μM, Tmax = 4 h; δTE, Cmax = 16.0 ± 2.3 μM, Tmax = 2 h. Sulfated CEHCs and sulfated 11’-COOHs were the predominant metabolites in the plasma of rat with Cmax of 0.4-0.5 μM (Tmax ~ 5-7 h) or ~0.3 μM (Tmax at 4.7 h), respectively. In 24-h urine, 2.7% of γT and 0.7% of dTE were excreted as conjugated CEHCs, the major identified urinary metabolites. In the feces, 17-45% of supplemented vitamers were excreted as un-metabolized forms and 4.9-9.2% as metabolites. The majority of metabolites excreted in feces were unconjugated carboxychromanols, among which 13’-COOHs constituted ~50% of total metabolites. Interestingly, 13’-COOHs derived from δTE were 2-fold higher than 13’-COOH from γT. Unlike rats, γ-CEHC is the predominant metabolites found in human plasma, although 11’-COOHs and 13’-COOHs (sulfated and unconjugated) were elevated by >20 folds responding to γT supplement. In this study, we found that tocopherols and tocotrienols, when taken as supplements, are mainly excreted as un-metabolized forms and long-chain carboxychromanols in feces. High fecal availability of 13’-COOHs may contribute to modulating effects on gut health.</p><p><br></p><p>The second project of my dissertation investigated the effect of vitamin E forms, αT and γT, on intestinal barrier function in a cellular model and a mouse colitis model. Inflammatory bowel diseases (IBD) are chronic idiopathic inflammatory conditions characterized by disruption of intestinal barrier integrity. Previous studies by others and us had demonstrated that vitamin E forms, αT and γT, can protect against chemical-induced colitis in animal models. However, the role of these vitamin E forms on intestinal barrier function has not been studied. Herein, we investigated the potential protective effects of vitamin E forms, αT and γT, on intestinal barrier function in a Caco-2 colon epithelial cell model and a dextran sodium sulfate (DSS)-induced colitis mouse model. In Caco-2 cells, pretreatment with 25mM αT and γT attenuated Caco-2 monolayer barrier dysfunction induced by 10 ng/mL TNF-α/IFN-γ, suggesting that these vitamin E forms protect intestinal barrier integrity in this cellular model. In male BALB/c mice, the supplementation of αT (0.05%) or γTmT (0.05%) when given 3 weeks before DSS treatment or at the same time as DSS treatment alleviated DSS-induced fecal bleeding and diarrhea symptoms in mice, and attenuated colon inflammation and colitis-associated damages. Additionally, αT and γTmT supplementation attenuated DSS-induced intestinal barrier dysfunction, as indicated by improving the level of occludin, a tight junction protein, in the colon and reducing lipopolysaccharide-binding protein (LBP) in the plasma. Furthermore, gut microbiota analysis demonstrated that αT and γTmT supplementation could modulate intestinal microbiome composition in mice with DSS treatment. DSS treatment reduced the relative abundance of Lachnospiraceae compared to healthy mice, and supplementation of αT and γT partially reversed this effect. Interestingly, the family Lachnospiraceae has been reported to decrease in IBD patients. Our study demonstrated the protective effects of vitamin E forms on intestinal barrier integrity in a cell-based model and a colitis model in mice. Furthermore, we demonstrated that these vitamin E forms caused favorable changes in the intestinal microbial population under colitis condition.</p><p><br></p><p>The third project of my dissertation evaluated the anticancer efficacy of the combination of aspirin and γT using an azoxymethane (AOM)-induced and colitis-promoted colon tumorigenesis mouse model. Extensive inflammation in the colon promotes the development of colorectal cancer (CRC). Eicosanoid production by pro-inflammatory enzymes, cyclooxygenases (COX-1 and COX-2) and 5-lipoxygenase (5-LOX) play a critical role in the initiation, progression, and invasion of CRC. Thus, nonsteroidal anti-inflammatory drugs (NSAIDs), such as aspirin, have been recommended for chemoprevention of CRC. However, long-term use of aspirin can cause many side effects, and the anticancer activity of aspirin is very modest. Previously, we have demonstrated that the combination of γT with aspirin prolonged the anti-inflammatory activity of aspirin and alleviated aspirin-associated adverse effects in a carrageenan-induced inflammation model in rats. Additionally, we found that the combination of γT and aspirin has stronger anticancer activity than aspirin or γT alone against HCT-116 human colorectal carcinoma cells. Therefore, we examined the anticancer effect of the combination of 0.025% aspirin and 0.05% γT against AOM-induced and DSS-promoted tumorigenesis in mice. In this study, we have found that the combination of aspirin and γT, but not aspirin or γT alone, suppressed colon tumorigenesis in mice, as indicated by 40% and 50% reduction in the multiplicity of total polyps (P < 0.05) and large adenomatous polyps (>2mm2, P < 0.05), respectively. More strikingly, the combination of aspirin and γT reduced the overall tumor area by 60% (P < 0.05). Noteworthy, the supplementation of γT also alleviated aspirin-induced stomach lesion and appeared to modulate intestinal microbial composition. Our study demonstrated that the combination of aspirin and γT has stronger anticancer activity than aspirin or γT alone while alleviates aspirin-associated adverse effect, suggesting that the combination of γT and aspirin is a more effective and safer chemopreventive agent for CRC than aspirin alone.</p>

Il termine malattia renale cronica (Chronic Kideny Disease: CKD) si riferisce a differenti condizioni caratterizzate da un progressivo declino della funzione renale. Le linee guida internazionali hanno definito la CKD come una condizione in cui siano presenti marcatori di danno renale e/o la velocità di filtrazione glomerulare stimata (Estimated Glomerular Filtration Rtae: eGFR) sia inferiore a 60 ml/min/1.73 m2 per almeno 3 mesi. L’insufficienza renale in stadio terminale è associata ad un alto rischio di malattia cardiovascolare (Cardiovascular Disease: CVD), la più frequente causa di morte in questi pazienti. Fattori di rischio “non-tradizionali” come: infiammazione cronica, stress ossidativo, deplezione proteico-energetica, disordini del metabolismo minerale e deficit di inibitori della calcificazione, partecipano alla patogenesi della CVD. L’infiammazione gioca un ruolo cruciale nella risposta fisiologica all’infezione e al danno renale e partecipa anche nell’evoluzione del danno renale irreversibile con la produzione di diverse molecole infiammatorie a partire da acidi grassi polinsaturi a lunga catena (Long Chain PolyuUsaturated Fatty Acids: LCPUFA) della serie Omega-6. La supplementazione di Omega-3, con effetto antinfiammatorio, nei pazienti affetti da CKD è stata ed è oggetto di molti studi, nonostante ciò, l’effetto sul danno renale è ancora poco chiaro. Comunque, è ampiamente riconosciuto che un alterato profilo lipidico possa determinare la progressione della patologia, inducendo lo stato infiammatorio. Inoltre, elevati/normali livelli di Omega-3 potrebbero essere associati al miglioramento della funzionalità renale, diminuendo quindi il rischio di peggioramento della malattia. Le concentrazioni e il rapporto di Omega-3 e Omega-6 sono strettamente associati alla salute del rene, poiché svolgono ruoli importanti in differenti vie metaboliche. Un altro aspetto, preso poco in considerazione, è l’effetto dei livelli di acidi grassi circolanti e dei loro metaboliti sullo stato infiammatorio e sulla sua modulazione. Il primo scopo di questo studio è stato quello di analizzare il profilo degli acidi grassi in soggetti anziani affetti da CKD. Sono stati arruolati 57 pazienti afferenti agli ambulatori di Nefrologia dell’Ospedale Maggiore Policlinico di Milano e sono stati raccolti campioni di sangue su cui è stata effettuata l’analisi del profilo lipidico. Negli ultimi anni, diversi studi hanno sottolineato la stretta associazione tra infiammazione a livello intestinale e peggioramento del quadro in pazienti con CKD. Il mantenimento di un ottimo stato del tratto gastrointestinale è fondamentale per assicurare lo stato di salute dell’ospite, contribuendo ai processi metabolici, fisiologici e immunologici. Le comunità batteriche instaurano un rapporto mutualistico con l’individuo che colonizzano, giocando un ruolo importante negli stati di salute e malattia. Un’anomala colonizzazione o cambiamenti nella composizione del microbiota intestinale, determina disbiosi, uno squilibrio associato a diverse condizioni patologiche come obesità, diabete di tipo II, malattia intestinale cronica, CVD e anche CKD. Il rapporto tra intestino e rene è bidirezionale, nei pazienti affetti da malattia renale cronica, la composizione del microbiota intestinale risulta essere modificata rispetto a quella del soggetto sano. Alti livelli di urea che si riversano facilmente nel tratto intestinale modificano il microambiente chimico con conseguente innalzamento del pH del colon che esercita una pressione selettiva a favore di specie ureasi-positive, responsabili della conversione dell’urea in ammoniaca. Lo strato protettivo di muco viene degradato e la permeabilità della barriera intestinale viene compromessa. In conseguenza di ciò si ha il passaggio di materiale batterico attraverso la mucosa e l’attivazione di un meccanismo infiammatorio. Nei pazienti con funzionalità renale compromessa, il rene perde progressivamente la capacità di eliminare sia le sostanze provenienti dal metabolismo umano, sia quelle della comunità microbica intestinale. Alcune di queste sostanze sono rappresentate dalle tossine uremiche, tra quelle di derivazione intestinale le principali e più studiate sono p-cresil solfato (PCS) e indossile solfato (IS). IS e p-CS, strettamente legate all’albumina sierica (Human Serum Albumin: HSA), non vengono eliminate facilmente ma rimangono nel torrente ematico. HSA è la più abbondante proteina sierica ed è la principale trasportatrice di composti esogeni ed endogeni, inclusi gli acidi grassi che sembrano rappresentare il maggior ligando endogeno della proteina. Multipli siti di legame vengono utilizzati per gli acidi grassi monoinsaturi (MonoUnsaturated Fatty Acids: MUFA) e PUFA. Acidi grassi e tossine uremiche competono quindi per gli stessi siti di legame sulla proteina. Il potenziale ruolo degli acidi grassi nel contrastare l’accumulo di tossine uremiche derivate dalla comunità batterica intestinale ne giustifica l’importanza della valutazione dei loro livelli ematici. Secondo scopo di questa tesi di dottorato è stato quello di valutare la possibile correlazione tra i livelli di acidi grassi circolanti e la composizione del microbiota intestinale in soggetti affetti da CKD. Sono stati arruolati nello studio 64 pazienti anziani con CKD non dializzati e 15 soggetti anziani con normale funzionalità renale. La composizione del microbiota intestinale è stata precedentemente caratterizzata attraverso l’impiego delle tecniche di elezione: PCR-DGGE e la PCR quantitativa (qPCR). In accordo con la letteratura scientifica, è stata evidenziata una riduzione di batteri saccarolitici e produttori di butirrato nei pazienti con CKD rispetto al gruppo di controllo. Il butirrato sembra giocare un ruolo cruciale nel mantenimento delle ottimali condizioni della barriera intestinale. Tenendo ciò in considerazione è stato deciso di approfondire lo studio e valutare l’associazione tra la comunità microbica intestinale e i livelli di acidi grassi basali in tali pazienti. Come risultato più importante ottenuto, è stata osservata una correlazione positiva statisticamente significativa tra la specie batterica Faecalibacterium Prausnitzii e i livelli totali di Omega-3 entrambi associati a proprietà antinfiammatorie. La presente tesi di dottorato evidenzia la necessità di sostenere ulteriori ricerche per supportare i risultati qui presentati. Studi futuri potrebbero essere utili per migliorare la comprensione del ruolo degli acidi grassi circolanti e i loro metaboliti sulla composizione del microbiota intestinale, sullo stato infiammatorio e sulla malattia renale cronica. / The aim of this thesis was to explore the possible associations between fatty acids (FA) profile and gut microbiota (gMb) with several conditions throughout the lifespan, from infancy to old age. In particular, we focused our attention on elderly subjects with Chronic Kidney Disease (CKD) and children with Acute Otitis Media (AOM). The terms “Chronic Kidney Disease” refers to several disorders with a progressive kidney function decline. International guidelines approved the definition of CKD as a condition with the presence of markers of kidney damage or with the estimated glomerular filtration rate (eGFR) less than 60 ml/min/1.73 m2 or both, for at least three months. End-stage renal disease is associated with a high cardiovascular disease (CVD) risk, the major cause of death in these patients. Chronic inflammation, oxidative stress, protein-energy wasting, disordered mineral metabolism, and deficiency of endogenous calcification inhibitors, known as non-traditional risks factor, take part in cardiovascular pathology in CKD. Inflammatory processes influence the physiological response to renal infection and injury but also participate in the development of potentially irreversible kidney damage with the production of various inflammatory molecular species, among whom eicosanoids and cytokines, from parental omega-6 long-chain polyunsaturated fatty acids (LCPUFA). Several studies focused their attention on the potential role of omega-3 (n-3) LCPUFA supplementation in subjects with CKD. Despite this, their effect on kidney damage is still not clear. However, it is widely agreed that a modified FA profile in CKD can determine a progression of the disease, inducing the inflammatory state. Moreover, high/normal n-3 LCPUFA levels decrease the risk of a decline of the disease. Omega-3 and omega-6 (n-6) LCPUFA concentrations and their ratios are tightly associated with renal health, because of their important roles in different pathways. Another aspect not very considered in the field of CKD is the role of circulating FA levels and their metabolites on the modulation of inflammation. The first aim of this study is to analyze the FA profile in elderly subjects with CKD. Blood samples have been collected from 57 subjects enrolled in the study, and FA analysis has been performed. During the last years, several studies underlined the strong relationship between intestinal inflammation and adverse outcomes in CKD. The health of gastrointestinal tract is fundamental to ensure the well being of the host contributing to its nutrition, metabolism, physiology, and immune function. The bacterial communities colonizing humans have been seen in terms of mutualistic symbiosis with their hosts, a mutually beneficial coexistence, playing an important role in health and disease. Abnormal colonization or changes in the gut microbial composition determine dysbiosis, a state associated with different illnesses, such as obesity, type 2 diabetes, inflammatory bowel disease, cardiovascular disease, and also chronic kidney disease. The relationship between gut and kidney is a bi-directional relation with a mutual influence. Chronic kidney disease influences gMB characteristics, especially through high levels of urea that easily spread in the intestinal fluid where bacterial urease enzymes degrade it, then it is hydrolyzed in ammonium hydroxide that increases fecal pH with a consequent alteration of intestinal cellular junctions. Besides, high levels of urea change intestinal microbiota composition damaging permeability of intestinal barrier and promoting proteolysis with production and absorption of uremic toxins, such as indoxyl sulfate (IS) and p-cresol sulfate (p-CS). These toxins induce an inflammatory process associated with CKD. Under physiologic conditions, the kidney through the urine eliminates these compounds, but CKD patients have a compromised renal clearance. Therefore, these solutes tend to accumulate in the organs. IS and p-CS are tightly bound to human serum albumin (HSA), the most abundant plasma protein in the bloodstream. HSA is recognized as the main means of transport for endogenous and exogenous compounds, including fatty acids that seem to be the main endogenous ligand of HSA, multiple binding sites are used for monounsaturated fatty acids (MUFA) and PUFA. Thus, free fatty acids and uremic toxins compete for the same binding sites on HSA. It is important to assess fatty acid (FA) levels in patients with CKD because of the potential role to contrast the accumulation of uremic toxins derived from the intestinal bacterial community. As a consequence of this bi-directional relation between gut and kidney and the possible involvement of some compounds as metabolites of FA in the inflammatory response, we investigate the correlation between circulating FA levels and the gMB composition in the same subjects with CKD, as the second aim of this thesis. 64 old CKD non-dialysis patients (eGFR 15-45 ml/min/1.73 m2) and 15 elderly subjects (>65 years) with normal renal function (eGFR >60 ml/min/1.73 m2, CKD-EPI) are enrolled. Bacterial composition was studied in a previous observational study by denaturating gel gradient electrophoresis (DGGE), high-throughput sequencing (16S ribosomal RNA), and quantitative real-time PCR (qPCR). This study described an increased abundance of some bacteria associated with pathological conditions. In agreement with the literature, the author found a reduced abundance of saccharolytic and butyrate-producing bacteria (Prevotella, Faecalibacterium prausnitzii, Roseburia) in CKD patients respect to the control group. Butyrate plays a crucial role in the maintenance of the gut barrier function. Taking that into account, we decided to investigate the correlation between gMB composition and FA profile in these subjects. The main result of the study was the significant positive correlation between Faecalibacterium prausnitzii and total n-3 levels, both associated with the antiinflammatory action. The present doctoral thesis underlines the need to perform further investigations in order to support evidence presented. Future studies may be useful to improve understanding of the effect of circulating fatty acids levels and their metabolites on gut microbial composition, inflammation process, and pathological conditions such as kidney disease. Our results showed that CKD patients with previous cardiovascular events had lower total and specific n-3 levels comparing with patients without them. Moreover, higher docosahexaenoic acid (DHA) levels and having had previous cardiovascular events seemed to have protective effects against further cardiovascular events. Moreover, we observed a significant reduction of the genera Roseburia and Faecalibacterium in CKD patients compared to C group and a significant lower abundance of F. prausnitzii and Roseburia spp. in CKD patients. Thus, our results seem in accordance with anti-inflammatory actions of total n-3, DHA, and saccharolytic and butyrateproducing bacteria. Many gMB changes seem to be related both to CKD and CVD. If the different gMB composition might play a causal role in cardiovascular events by an unbalanced production of some toxic substances, or if the gMB changes are merely a consequence of different dietary and lifestyle behaviours of these patients, it cannot be explained by the present study and all the yet available data. Further studies, possibly utilizing new high-throughput tools, will be required to understand the potential correlations between the gMB composition and other inflammation and oxidative stress markers in these patients. Other two studies have been performed during the doctoral course, to reach a better comprehension of fatty acids, gut microbial community and inflammatory states. A prospective pilot clinical study has been performed to to explore possible changes of gMB composition in children with AOM treated with amoxicillin with or without clavulanic acid. AOM is one of the most common bacterial infections in children and is normally treated with antibiotic therapies that lead to increasing antimicrobial resistance rates among otopathogens and may impair the correct development of the microbiota in early life. No significant differences were shown in the gMB composition of the overall cohort at different time intervals of the samples collection and in subjects treated with amoxicillin with or without clavulanic acid at different time intervals (T0, T1 and T2). A literature revision on lipids in infant formulae has been performed to better understanding quality and quality of dietary lipids because of their significant impact on health outcomes, especially when fat storing and/or absorption are limited (e.g., preterm birth and short bowel disease) or when fat byproducts may help to prevent some pathologies. The lipid composition of infant formulae varies according to the different fat sources used, and the potential biological effects are related to the variety of saturated and unsaturated FAs. Instead, ruminant-derived trans FAs and metabolites of n-3 LCPUFA with their anti-inflammatory properties can modulate immune function. Furthermore, dietary fats may influence the nutrient profile of formulae, improving the acceptance of these products and the compliance with dietary schedules. During the doctoral course, I spent a period abroad at Dell Pediatric Research Institute (DPRI), The University of Texas at Austin. In particular, I attended the laboratory of Doctor Brenna. I focused my research activity on a specific regulatory insertion-deletion polymorphism in the FADS gene cluster for better understanding its influence on PUFA and lipid profile.

L’intestin est un organe majeur de l’organisme de par ses fonctions et sa localisation, établissant une barrière active avec un environnement complexe composé du microbiote intestinal, des aliments digérés et d’éléments sécrétés par l’hôte. Outre ses fonctions digestives, absorptives et immuno-modulatrices, l’intestin est également un important organe endocrinien, sécrétant une vingtaine d’hormones régulant des fonctions physiologiques telles que la prise alimentaire, le métabolisme énergétique ou la digestion et le transit intestinal. Ces hormones sont produites par une famille de cellules épithéliales, les cellules entéroendocrines, et sécrétées en réponse à l’activation de récepteurs reconnaissant des éléments du contenu intestinal. En particulier, les cellules entéroendocrines de type L sécrètent GLP-1 et Peptide YY (PYY), impliqués respectivement dans le contrôle de la sécrétion d’insuline et dans la régulation de la prise alimentaire ainsi que le contôle du transit intestinal. Elles sont majoritairement localisées dans l’iléon et le côlon, là où le microbiote intestinal est le plus dense. Le microbiote intestinal permet notamment la fermentation des fibres en acides gras à chaîne courte (AGCC), la production de vitamines, la maturation du système immunitaire de l’hôte et joue lui-même un rôle de barrière contre les pathogènes. Un dialogue entre le microbiote intestinal et l’hôte est nécessaire dans le maintien de l’homéostasie intestinale, nécessitant la reconnaissance par l’hôte de produits bactériens. En particulier, les récepteurs Toll-Like (TLR) permettent la reconnaissance de motifs moléculaires microbiens conservés et sont impliqués dans l’immunité innée de l’hôte. Certains produits bactériens ont également un rôle physiologique tels que les AGCC qui sont une source d’énergie importante pour les colonocytes, en plus d’activer des voies de signalisation. Il a été montré que des régimes riches en fibres, et donc permettant une production accrue d’AGCC, ou plus directement l’administration d’AGCC dans le colon, induit chez l’Homme ou la souris une augmentation des concentrations plasmatiques de PYY, par des mécanismes encore peu compris. En utilisant des lignées cellulaires humaines modèles de cellules entéroendocrines, nous avons caractérisé les effets des AGCC et des motifs bactériens reconnus par les TLR sur l’expression et la sécrétion de PYY et les réponses calciques dans ces cellules. Nous avons pu démontrer que les TLR sont exprimés de manière fonctionnelle, à l’exception de TLR4 et TLR8 dans ces cellules, et que le butyrate augmente leur expression et leur activité. De plus, la stimulation des TLR augmente l’expression de Pyy d’un rapport de 2, mais a peu d’effet sur la sécrétion dans ces cellules. Les AGCC ont des effets divers sur l’expression et la sécrétion de PYY. Alors que le butyrate et le propionate augmentent très fortement l’expression de Pyy, par des rapports respectivement de 120 et 40, par un mécanisme d’inhibition des déacétylases d’histone et de lysine, l’acétate augmente l’expression de Pyy plus modestement par l’activation des récepteurs aux AGCC FFAR2 et FFAR3. L’activation de FFAR2 par les AGCC induit une forte réponse calcique oscillatoire induisant la sécrétion de PYY alors que l’activation de FFAR3 et de GPR109a par le butyrate diminue la concentration calcique cellulaire et réduit les réponses sécrétoires. Ainsi, les AGCC augmentent la production de PYY et régulent sa sécrétion, mais avec et par des effets différents. Ces travaux ont permis de montrer le rôle des cellules entéroendocrines humaines de type L dans la reconnaissance de produits bactériens par l’expression de TLR et par leurs réponses aux AGCCs modulant l’expression et de la sécrétion de PYY. De plus, ces résultats ont déterminés en partie les mécanismes impliqués dans la réponse bénéfique de l’hôte à la consommation de fibres et l’augmentation de la production d’AGCC. / The human gut exerts major functions, mainly due to its localization and by forming an active barrier between a complex environment made of the gut microbiota, digested food products and secreted elements by the host. The main functions of the gut are digestion and absorption of nutrients and it is the first pool of immune cells and a barrier against pathogens, but the gut is also a main endocrine organ secreting more than twenty different hormones. These hormones regulate a wide range physiological functions including food intake, energy metabolism or digestion. Enteroendocrine cells, a sparse family of intestinal epithelial cells, produce and secrete these hormones in response to the activation of a variety of receptors that sense luminal content. Among them, L-cells secrete GLP-1 and Peptide YY (PYY) that are implicated in the regulation of insulin secretion, food intake and intestinal motility. They are mainly found in the distal ileum and in the colon where the microbiota is the densest. Gut microbiota ferments fibers into short chain fatty acids (SCFAs), produces vitamins, participates in regulation of host immune system and is a barrier against pathogens. The cross talk between microbiota and intestinal epithelium is important to maintain the local homeostasis, and is mediated by host receptors recognizing microbial products. Among them, Toll-like receptors (TLRs) recognize conserved microbial associate molecular patterns (MAMPs) and participate to the host innate immunity. Some microbial products also have important functions for the host such has SCFAs that are an important energy substrate for colonocytes and can also activate different signaling pathways. It was shown that fiber-rich diets, increasing production of SCFAs, as well as direct administration of SCFAs in the colon in humans or mice increased PYY plasma levels through mechanisms still undeciphered. Taking advantage of human cell lines as L-cell models, we assessed the different effects of SCFAs and TLR stimulation on PYY expression and secretion and calcium signaling in these cells. We showed that TLRs are functionally expressed in these cells at the exception of TLR4 and TLR8, and that butyrate, one of the three main SCFAs produced by the microbiota increases cell sensitivity to TLR stimulation by increasing their expression. Moreover, TLR stimulation increases Pyy expression by a fold of two but has little effect on secretion. SCFAs differently regulate Pyy expression. Propionate and butyrate highly increase Pyy expression by a fold of 40 and 120 respectively, and their effects are mainly mediated by inhibition of lysine/histone deacetylases whereas acetate increases expression of Pyy by a fold of 1.8 through stimulation of FFAR2 and FFAR3. SCFAs also induce a strong FFAR2-dependent oscillatory response monitoring PYY secretion whereas butyrate via FFAR3 and GPR109a decreases cytosolic calcium concentration and consequently reduces secretory responses. Thus, SCFAs differently increase PYY production and secretion depending of their chain length. Altogether, these results highlight the role human L-cells in microbiota-host crosstalk by sensing microbial products through expression of TLRs and their responses to SCFAs modulating PYY production and secretion. Furthermore, we deciphered some of the mechanisms implicated in beneficial host response to enriched fiber diets and increased production of SCFAs.

L’avènement du séquençage métagénomique aléatoire a révolutionné la microbiologie en permettant la caractérisation sans culture préalable de communautés microbiennes complexes telles que le microbiote intestinal humain. Des outils bioinformatiques récemment développés atteignent une résolution au niveau de la souche en recensant des gènes accessoires ou en capturant des variants nucléotidiques (SNPs). Toutefois, ces outils sont limités par l’étendue des génomes de référence disponibles qui sont loin de couvrir toute la variabilité microbienne. En effet, de nombreuses espèces n’ont pas encore été séquencées ou sont représentées par seulement quelques génomes.La création de catalogues de gènes non redondants par assemblage de novo suivie du regroupement des gènes co-abondants révèlent une partie de la matière noire microbienne en reconstituant le répertoire de gènes d’espèces potentiellement inconnues. Bien que les méthodes existantes identifient avec précision les gènes core présents dans toutes les souches d’une espèce, elles omettent de nombreux gènes accessoires ou les divisent en petits groupes de gènes qui ne sont pas associés aux core génomes. Or, capturer ces gènes accessoires est indispensable en recherche clinique et épidémiologique car ces derniers assurent des fonctions spécifiques à certaines souches telles que la pathogénicité ou la résistance aux antibiotiques.Lors de cette thèse, nous avons développé MSPminer, un logiciel performant qui reconstitue et structure des pan-génomes d’espèces métagénomiques (ou MSPs pour Metagenomic Species Pan-genomes) en regroupant les gènes co-abondants dans un ensemble d’échantillons métagénomiques. MSPminer s’appuie sur une nouvelle mesure robuste de la proportionnalité couplée à un classificateur empirique pour regrouper et distinguer les gènes core mais aussi les gènes accessoires des espèces microbiennes.Grâce à MSPminer, nous avons structuré un catalogue de 9,9 millions de gènes du microbiote intestinal humain en 1 661 MSPs. L’homogénéité de l’annotation taxonomique, de la composition nucléotidique ainsi que la présence de gènes essentiels indiquent que les MSPs ne correspondent pas à des chimères mais à des objets biologiquement cohérents regroupant des gènes provenant de la même espèce. Parmi ces MSPs, 1 301 (78%) n’ont pas pu être annotées au niveau espèce montrant que de nombreux microorganismes colonisant l’intestin humain demeurent inconnus malgré les progrès substantiels des techniques de culture microbienne. Remarquablement, les MSPs capturent bien plus de gènes que les clusters générés par les outils existants tout en garantissant une spécificité élevée.Cet ensemble de MSPs peut d’ores et déjà être utilisé pour le profilage taxonomique et la découverte de biomarqueurs dans des échantillons de selles humaines. Ainsi, nous tirons parti des MSPs pour comparer l’impact sur le microbiote intestinal des deux principaux types de chirurgie bariatrique, la gastrectomie par laparoscopie (LSG) et la dérivation gastrique de Roux-en-Y (LRYGB). Enfin, les MSPs ouvrent la voie à des analyses au niveau souche. Dans une autre cohorte, nous avons mis en évidence l’existence de sous-espèces associées à l’origine géographique de l’hôte en étudiant les profils de présence/absence des gènes accessoires groupés dans les MSPs. / The advent of shotgun metagenomic sequencing has revolutionized microbiology by allowing culture-independent characterization of complex microbial communities such as the human gut microbiota. Recently developed bioinformatics tools achieved strain-level resolution by making a census of accessory genes or by capturing nucleotide variants (SNPs). Yet, these tools are hampered by the extent of available reference genomes which are far from covering all the microbial variability. Indeed, many species are still not sequenced or are represented by only few genomes.Building of non-redundant gene catalogs followed by the binning of co-abundant genes reveals a part of the microbial dark matter by reconstituting the gene repertoire of species potentially unknown. While existing methods accurately identify core genes present in all the strains of a species, they miss many accessory genes or split them into small gene groups that remain unassociated to core genomes. However, capturing these accessory genes is essential in clinical research and epidemiology because they provide functions specific to certain strains such as pathogenicity or antibiotic resistance.In this thesis, we developed MSPminer, a computationally efficient software tool that reconstitutes Metagenomic Species Pan-genomes (MSPs) by binning co-abundant genes across metagenomic samples. MSPminer relies on a new robust measure of proportionality coupled with an empirical classifier to group and distinguish not only species core genes but accessory genes also.With MSPminer, we structured a catalog made up of 9.9 million genes of the human gut microbiota in 1 661 MSPs. The homogeneity of the taxonomic annotation, of the nucleotide composition as well as the presence of essential genes indicate that the MSPs do not correspond to chimeras but to biologically consistent objects grouping genes from the same species. Among these MSPs, 1 301 (78%) could not be annotated at species level showing that many microorganisms colonizing the human intestinal tract are still unknown despite the substantial improvements of microbial culture techniques. Remarkably, MSPs capture more genes than clusters generated by existing tools while ensuring high specificity.This set of MSPs can be readily used for taxonomic profiling and biomarkers discovery in human gut metagenomic samples. In this way, we take advantage of the MSPs to compare the impact of two main types of surgeries, the laparoscopic sleeve gastrectomy (LSG) and the Roux-En-Y gastric bypass (LRYGB). Finally, the MSPs open the way to strain-level analyses. In another cohort, we identified subspecies associated the host geographical origin by studying presence/absence patterns of the accessory genes grouped in the MSPs.

No description available.

[ES] El alcohol es una de las drogas más aceptadas y consumidas a nivel mundial, y su ingesta crónica causa alteraciones en el sistema nervioso central, desde desmielinización hasta muerte neural. Se ha demostrado que gran parte de estos efectos estarían mediados por la activación del sistema inmune innato, principalmente a través del receptor TLR4, que desemboca en un estado inflamatorio. Para ahondar en estos mecanismos, en esta tesis se pretende analizar si el consumo crónico de etanol puede causar modificaciones en los miARNs de la corteza cerebral, regulando la expresión de genes proinflamatorios asociados a la ruta de señalización del TLR4 y si el uso de la curcumina como terapia es capaz de disminuir estos efectos. Además, analizaremos si el consumo de alcohol a largo plazo es capaz de alterar la microbiota intestinal, y la implicación del TLR4 en estos procesos. Nuestros resultados demuestran que el etanol es capaz de alterar la expresión de diferentes microARNs que regulan la expresión de genes proinflamatorios y asociados a la vía del TLR4. La ausencia del receptor causa un perfil de expresión distinto tanto en los controles como en los animales alcohólicos crónicos. Puesto que en los últimos años nos hemos interesado en la búsqueda de una posible terapia para paliar la neuroinflamación producida por el etanol, hemos usado el BDMC, un curcuminoide con capacidad antiinflamatoria y antioxidante, para revertir los daños causados por el abuso del alcohol. Para su administración proponemos su conjugación con un polipéptido que elimina los tradicionales problemas asociados al uso de estos compuestos naturales como son su vida media corta y su baja biodisponibilidad, sin que hayamos registrado toxicidad. El uso de este polímero en animales con un consumo crónico de etanol produce una disminución de la inflamación, tanto a nivel proteico como de expresión génica. Considerando que otra de las regiones del organismo más afectadas por el alcohol es el tracto gastrointestinal, y que la población bacteriana puede ser modificada en determinadas enfermedades o por el uso de sustancias nocivas, produciendo una disbiosis, hemos comparado el efecto del alcohol sobre la población bacteriana y la participación del receptor TLR4 en estos efectos. Mediante análisis de expresión génica, confirmamos que el tejido intestinal ausente del receptor TLR4 es menos susceptible de sufrir cambios debidos al consumo de alcohol. Sin embargo, no hemos encontrado en estos animales la expresión aumentada de genes proinflamatorios característica de los tratamientos alcohólicos. Además, los ratones carentes de este receptor presentan una microbiota intestinal única y diferente a la encontrada en animales de genotipo normal, con sus propios cambios en el equilibrio bacteriano en respuesta a la ingesta de alcohol. Esta microbiota presenta menor cantidad de especies Gram - y mayor resistencia al desequilibrio ocasionado por el alcohol, que su contraparte en los ratones WT. En general, los resultados científicos que aparecen en esta tesis resaltan el papel del TLR4 en las alteraciones causadas por el consumo crónico de alcohol. Mostramos como cambios causados por el etanol a niveles tan distintos como la regulación mediante miARNs o la microbiota intestinal dependen en gran medida de la respuesta inicial que causa el alcohol en el TLR4. Dado que es un receptor necesario para el correcto funcionamiento de muchos órganos, planteamos un posible tratamiento mediante la inhibición de esta cascada inflamatoria. / [CA] L'alcohol és una de les drogues més acceptades i consumides a nivell mundial, i la seva ingesta crònica causa alteracions al sistema nerviós central, des de desmielinització fins a mort neural. S'ha demostrat que gran part d'aquests efectes estarien intervinguts per l'activació del sistema immune innat, principalment a través del receptor TLR4, que desemboca en un estat inflamatori. Per aprofundir en aquests mecanismes, en aquesta tesi es pretén analitzar si el consum crònic d'etanol pot causar modificacions als miARNs de l'escorça cerebral, regulant l'expressió de gens proinflamatoris associats a la ruta de senyalització del TLR4 i si l'ús de la curcumina com a teràpia és capaç de disminuir aquests efectes. A més, analitzarem si el consum d'alcohol a llarg termini és capaç d'alterar la microbiota intestinal i la implicació del TLR4 en aquests processos. Els nostres resultats demostren que l'etanol pot alterar l'expressió de diferents microARNs que regulen l'expressió de gens proinflamatoris i associats a la via del TLR4. L'absència del receptor causa un perfil d'expressió diferent tant als controls com als animals alcohòlics crònics. Com que els darrers anys ens hem interessat en trobar una possible teràpia per pal·liar la neuroinflamació produïda per l'etanol, hem utilizat el BDMC, un curcuminoide amb capacitat antiinflamatòria i antioxidant, per revertir els danys causats per l'abús de l'alcohol. Per a la seva administració proposem la seva conjugació amb un polipèptid que elimina els problemes tradicionals associats a l'ús d'aquests compostos naturals com són la seva vida mitjana curta i la seva baixa biodisponibilitat, sense que haguem registrat toxicitat. L¿ús d¿aquest polímer en animals amb un consum crònic d¿etanol produeix una disminució de la inflamació, tant a nivell proteic com d¿expressió gènica. Considerant que una altra de les regions de l'organisme més afectades per l'alcohol és el tracte gastrointestinal, i que la població bacteriana pot ser modificada en determinades malalties o per l'ús de substàncies nocives, produint una disbiosi, hem comparat l'efecte de l'alcohol sobre la població bacteriana i la participació del receptor TLR4 en aquests efectes. Mitjançant una anàlisi d'expressió gènica, confirmem que el teixit intestinal absent del receptor TLR4 és menys susceptible de patir canvis deguts al consum d'alcohol. Tot i això, no hem trobat en aquests animals l'expressió augmentada de gens proinflamatoris característica dels tractaments alcohòlics. A més, els ratolins sense aquest receptor presenten una microbiota intestinal única i diferent de la trobada en animals de genotip normal, amb els seus propis canvis en l'equilibri bacterià en resposta a la ingesta d'alcohol. Aquesta microbiota presenta menor quantitat d'espècies Gram - i més resistència al desequilibri ocasionat per l'alcohol, que la contrapart en els ratolins WT. En general, els resultats científics que apareixen en aquesta tesi ressalten el paper del TLR4 a les alteracions causades pel consum crònic d'alcohol. Mostrem com a canvis causats per l'etanol a nivells tan diferents com la regulació mitjançant miARNs o la microbiota intestinal depenen en gran mesura de la resposta inicial que causa l'alcohol al TLR4. Atès que és un receptor necessari per al funcionament correcte de molts òrgans, plantegem un possible tractament mitjançant la inhibició d'aquesta cascada inflamatòria. / [EN] Alcohol is one of the most accepted and consumed drugs worldwide, and its chronic consumption causes alterations in the central nervous system, such as demyelination and neural death. It has been shown that these effects would be mediated by the activation of the innate immune system, mainly through the TLR4 receptor, which leads to an inflammatory response. To inquire into these mechanisms, this thesis aims to analyse whether chronic ethanol consumption can cause changes in miRNAs in the cerebral cortex, regulating the expression of proinflammatory genes associated with the TLR4 signalling pathway, and whether the use of curcumin as a therapy it is able to reduce these effects. In addition, we will analyse if long-term alcohol consumption can alter the intestinal microbiota, and the involvement of TLR4 in these processes. Our results show that ethanol can alter the expression of different microRNAs that regulate the expression of proinflammatory genes associated with the TLR4 pathway. The absence of this receptor causes a different expression profile in both controls and chronic alcoholic animals. Taking into account our interest in seeking a possible therapy to alleviate the neuroinflammation caused by ethanol, we have used BDMC, a curcuminoid with anti-inflammatory and antioxidant activity, to ameliorate the damage caused by alcohol abuse. For its administration, we propose its conjugation with a polypeptide that eliminates the traditional problems associated with the use of these natural compounds, such as their short half-life and low bioavailability, with no toxicity recorded. The use of this polymer in animals with chronic ethanol consumption produces a decrease in inflammation, at both protein level and gene expression. Considering that another of the regions of the body most affected by alcohol is the gastrointestinal tract, and that bacterial population can be modified in certain diseases or due to harmful substances, producing dysbiosis, we have compared the effect of alcohol on the bacterial population and the participation of the TLR4 receptor in these effects. Using gene expression analysis, we confirm that intestinal tissue without TLR4 receptor show less changes induced by the alcohol consumption. However, we have not found in these animals an increased expression of proinflammatory genes which are observed in alcoholic treatments. In addition, mice lacking this receptor have a unique intestinal microbiota, which is different from the normal genotype animals, with their own changes in bacterial balance in response to alcohol intake. This microbiota has less Gram - species and greater resistance to imbalance caused by alcohol than its counterpart in WT mice. In general, the results of this thesis highlight the role of TLR4 in the alterations caused by chronic alcohol consumption. We show that ethanol can cause changes at different levels, such as regulation of miRNAs or intestinal microbiota, which largely depend on the TLR4 activation induced by ethanol. Therefore, herein we demonstrate the importance of the TLR4 to the correct activity of several body organs, and we propose a possible treatment by inhibiting its inflammatory cascade. / Cuesta Díaz, CM. (2022). Papel de los receptores TLR4 y de la microbiota intestinal en los procesos inflamatorios y neuroinflamatorios causados por el consumo crónico de alcohol, y posibles terapias con curcuminoides [Tesis doctoral]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/183832 / TESIS