Photodynamic therapy (PDT) is a multimodality cancer treatment available for the palliation or eradication of systemic and cutaneous malignancies. In this thesis, the application of PDT is for the treatment of non-melanoma skin cancer (NMSC). While PDT has a well-documented track record, there are, at this time no significant indicators to suggest the superiority of one treatment regime over the next. The motivation for this work is to provide additional evidence pertaining to PDT treatment variables, and to assist in optimising PDT treatment regimes. One such variable is the treatment light dose. Determining the light dose more accurately would assist in optimising treatment schedules. Furthermore, choice of photosensitiser pro-drug type and application times still lack an evidence base. To address issues concerning treatment parameters, fluorescence spectroscopy – a valuable optical diagnostic technique – was used. Monitoring the in vivo PpIX fluorescence and photobleaching during PDT was employed to provide information pertaining to the progression of treatment. This was demonstrated by performing a clinical study at the Photobiology Unit, Ninewells Hospital and Medical School, Dundee. Two different photosensitiser pro-drugs – either 5-aminolaevulinic acid (ALA) or its methyl ester (MAL) – were investigated and based on the fluorescence and pain data recorded both may be equally suitable for topical PDT. During PDT, surface fluorescence is observed to diminish with time – due to photobleaching – although cancerous cells may continue to be destroyed deep down in the tissue. Therefore, it is difficult to ascertain what is happening at depth in the tumour. This raised the questions; How long after surface PpIX fluorescence has diminished is the PDT treatment still effective and to what depths below the surface is effective treatment provided? In order to address these important questions, a three-dimensional (3D) Monte Carlo radiation transfer (MCRT) model was used to compute the light dose and the ¹O₂ production within a tumour, and the PpIX fluorescence emission from the tumour. An implicit dosimetry approach based on a single parameter – fluorescence photobleaching – was used in order to determine the ¹O₂ generation, which is assumed to be related to tissue damage. Findings from our model recommended administering a larger treatment light dose, advocating an increase in the treatment time after surface PpIX fluorescence has diminished. This increase may ultimately assist in optimising PDT treatment regimes, particularly at depth within tumours.

Les mélanomes malins (MM) constituent le deuxième type de cancer le plus fréquent chez les jeunes adultes canadiens (entre 20 et 44 ans) ainsi qu’un des rares cancers dont l’incidence augmente annuellement. À moins que les MM ne soient excisés à temps par chirurgie, les chances de survie des patients sont pratiquement nulles puisque ce type de tumeur est très réfractaire aux traitements conventionnels. Il est bien connu que l’exposition aux rayons ultraviolets (UV), induisant des photoproduits génotoxiques, est une déterminante majeure dans l’acquisition de MM. À cet effet, la réparation par excision de nucléotides (NER) est la ligne de défense principale contre le développement des mélanomes puisqu’elle est la voie de réparation prépondérante en ce qui a trait aux dits photoproduits. Malgré cela, la contribution potentielle de défauts de la NER au développement des MM dans la population normale n’est toujours pas bien établie. Notre laboratoire a précédemment développé une méthode basée sur la cytométrie de flux qui permet de mesurer la NER en fonction du cycle cellulaire. Cette méthode a déjà mise en évidence qu’une déficience de l’activité de la protéine ATR peut mener à une déficience de la NER exclusive à la phase S dans des fibroblastes humains. Pareillement, nous avons démontré que plusieurs lignées cellulaires cancéreuses modèles comportent une déficience en NER en phase S, suggérant qu’une telle déficience puisse caractériser certains types de cancers. Nous avons voulu savoir si une déficience en NER en phase S pouvait être associée à une proportion significative de mélanomes et si le tout pouvait être attribuable à une diminution de l’activité d’ATR. Nos objectifs ont donc été de : (i) mesurer l’efficacité de la NER en fonction du cycle cellulaire dans les MM en comparaison avec les mélanocytes primaires, (ii) vérifier si le niveau d’activité d’ATR corrèle avec l’efficacité de la NER en phase S dans les lignées de MM et (iii) voir si un gène fréquemment muté dans les mélanomes (tels PTEN et BRAF) pouvait coopérer avec ATR pour réguler la NER en phase S dans les mélanomes. Nous avons démontré que 13 lignées de MM sur 16 ont une capacité grandement diminuée à réparer les photoproduits induits par UV spécifiquement en phase S. De plus, cette déficience corrèle fortement avec une réduction de l’activation d’ATR et, dans plusieurs lignées de MM, avec une phosphorylation d’Akt plus importante. L’utilisation d’ARN interférent ou d’un inhibiteur du suppresseur de tumeurs PTEN, a permis, en plus d’augmenter la phosphorylation d’Akt, de réduire la réparation des photoproduits et l’activation d’ATR dans les cellules en phase S. En addition, (i) l’expression ectopique de la protéine PTEN sauvage dans des lignées déficientes en PTEN (mais pas d’une protéine PTEN sans activité phosphatase) ou (ii) l’inhibition pharmacologique d’Akt a permis d’augmenter la réparation en phase S ainsi que l’activation d’ATR. En somme, cette étude démontre qu’une signalisation d’ATR dépendante de PTEN/Akt amenant à une réparation déficiente des photoproduits génomiques causés par les UV en phase S peut être déterminante dans le développement des mélanomes induits par UV. / Malignant melanoma (MM) is the second most frequent neoplasia among young Canadian adults (aged 20-44); moreover the incidence of this disease continues to rise annually at an alarming rate. Unless primary melanoma is diagnosed early and promptly resected the patient prognosis is dismal since this deadly tumour type metastasizes extremely aggressively and is highly refractory to conventional treatment protocols. It is well established that exposure to UV light, and subsequent induction of genotoxic DNA photoproducts, is a primary determinant in the initiation of MM. Furthermore nucleotide excision repair (NER) clearly represents a critical frontline defence against MM because it is the only human pathway designed to remove the aforementioned DNA photoproducts. Despite this, the potential contribution of NER defects to sporadic MM development in the general population has remained unclear. Our laboratory previously developed a novel flow cytometry-based assay to evaluate the efficiency of NER as a function of cell cycle. This method was employed to demonstrate that functional ATR kinase is strictly required for NER during S phase in primary human fibroblasts. Intriguingly we also reported that many model tumour cell lines are deficient in NER uniquely in S phase populations, raising the possibility that such a defect might be characteristic of certain types of cancers. We therefore hypothesized that a significant proportion of human MM cell lines may exhibit reduced NER capacity specifically during S phase, and that this in turn might be attributeable to reduced ATR signaling. To test this hypothesis, three major specific aims were proposed: (i) To measure the efficiency of NER as a function of cell cycle among a panel of human MM cell lines and in primary melanocytes; (ii) To investigate whether any correlation exists between NER status and ATR activity during S phase in human MM cell lines; (iii) To investigate whether frequently mutated genes in melanoma (eg., PTEN, BRAF) might cooperate with ATR to regulate S phase-specific NER in MM cell lines. We were able to demonstrate that, in fact, 13/16 MM cell lines display remarkably diminished capacity to remove UV-induced DNA photoproducts specifically during S phase. Furthermore this defect correlates strongly with reduced activation of ATR kinase and, for a majority of MM, higher Akt phosphorylation levels. RNAi-mediated knockdown of the PTEN tumour suppressor, while stimulating Akt phosphorylation as expected, also engenders reductions in both photoproducts repair and ATR activation in S phase cells. In addition, (i) ectopic expression in PTEN-null strains of wild type PTEN but not of PTEN variants deficient in phosphatase activity, or (ii) pharmacological inhibition of Akt, significantly rescue S phase-specific repair as well as ATR activation. Our data indicate that reduced PTEN/Akt-dependent ATR signaling leading to defective repair of UV DNA photoproducts uniquely during S phase may represent an heretofore unrecognized major determinant in sunlight-induced melanoma development.

A Thesis submitted to The University of Arizona College of Medicine - Phoenix in partial fulfillment of the requirements for the Degree of Doctor of Medicine. / Histopathologic examination of the tumor microenvironment demonstrates the presence of a vast repertoire of infiltrating lymphocytes and antigen presenting cells (APC’s). Recent studies establish a strong correlation between the tumor microenvironment cell composition and prognostic value in terms of cell type, location and ratio, referred to as a tumor’s immunoscore. More specifically, the relationship between T regulatory (Treg) cell to T effector (Teff) cell percentage predominates as a mechanism of tumor immune evasion. Further investigation of the factors influencing the development of Treg and Teff cells is therefore warranted. Gammainterferon‐inducible lysosomal thiol reductase (GILT) acts to influence antigenic processing and presentation by MHC class II cells, ultimately impacting lymphocyte development. Evaluation of the role of GILT expression in MHC class II+ APC’s with respect to Treg and Teff cell development in primary melanoma lesions, to our knowledge, has not been reported. Therefore our investigation focuses on elucidating a plausible relationship between GILT presence and Treg to Teff cell ratio. The aim of our study is to examine a possible association between GILT expression in APC’s and Treg:Teff cell ratio. We hypothesized GILT expression in melanoma cells would result in a decreased Treg to Teff ratio or an enhanced T cell‐mediated response. Our study included 17 de‐identified primary melanoma specimens previously stained and scored for Treg, Teff, CD8, MHC class II and GILT. Scoring was performed through identification of four areas per specimen with highest Treg and Teff cell density. These four areas were then averaged with ± standard deviation (SD). With use of landmark association, these four areas were identified and scored for MHC class II and GILT in APC’s and tumor cells with consideration to presence/absence, intensity and frequency of staining. Statistical significance was not reached relative to our hypothesized relationship of a decreased Treg to Teff cell ratio in the presence of GILT+ MHC class II. Similarly, we did not reach statistical significance when comparing individual cell types to GILT, MHC class II and GILT + MHC class. In our study, we were unable reach statistical significance relative to our proposed correlation between MHC class II and GILT presence leading to a decreased Treg to Teff cell ratio or enhanced T‐cell mediated immune response. A major limitation of our study included the small sample size leading to a probable type II error, prompting the need for further investigation of the factors influencing the Treg to Teff cell ratio within the melanoma tumor microenvironment on a larger scale.

<p>Uvod: Od kada je prvi put opisan pre 30 godina, kod porodica obolelih od melanoma<br />kože, displastični nevus je predmet debate. Klinički najznačajnija kontroverza je da se<br />displastični nevus klinički često smatra sumnjivim i da se te&scaron;ko razlikuje od ranog<br />melnoma kože. Ovakav klinički izgled displastičnog nevusa je razlog čestih nepotrebnih<br />ekscizija, jednog od najče&scaron;ćih nevusa čoveka. Ciljevi: Ispitati kliničke i dermoskopske karakteristike patohistolo&scaron;ki potvrđenih displastičnih nevusa, i utvrditi učestalost displastičnih nevusa među sumnjivim melanocitnim lezijama koje su odabrane kliničko-dermoskopskim pregledom. Metode: U analitičkoj kliničkoj studiji, u prospektivnom delu, koristili smo kliničko-dermoskospki pristup po predloženom protokolu za selekciju sumnjivih melanocitnih lezija za eksciziju. Ekscidirano je 279 lezija. Od ukunog broja, 83 su bile lezije veoma sumnive na melanom kože, kod 116 lezija melanom nije mogao biti isključen u diferencijalnoj dijagnozi, a 80 lezija su imponovale dobroćudne i ekscidirane su zbog smetnji koje su pričinjavale pacijentu. Klinički su lezije opisivane prema ABCD akronimu (A za asimetriju, B za nepravilnost ivica, C za nepravilnu prebojenost i D za veličinu preko 5 mm). Za dermoskopski opis lezija su korisćeni algoritmi Analiza struktura i Lista od sedam tačaka. Rezultati: Nakon histopatolo&scaron;kog pregleda ekscidiranih 279 lezija, 242 lezije su bile nevusi, od kojih 131 displastični nevus, koji je analiziran posebno za potrebe ove studije, dok su 47 lezija činili melanomi kože. Histopatolo&scaron;ki potvrđeni displastični nevusi su proistekli dominantno iz grupa lezija kliničko-dermoskospki upućenih kao sumnjive na melanom ili iz grupe gde melanom nije mogao biti isključen u diferencijalnoj dijagnozi OR 2,49 (95%CI 1,51-4,11) p=0,0003. Svako ispitano kliničko obeležje ponaosob i u svim mogućim kombinacijama, je bilo od značaja samo za melanoma kože p&lt;0,0001. Nije bilo značajnih razlika u grupi displastičnih nevusa i ostalih nevusa. Displastične nevuse su činile sumnivim njihove dermoskopske karakteristike. Kod ovih nevusa je bila če&scaron;ća multikomponentna struktura OR 4,84 (95%CI 2,87-8,16) p&lt;0,0001 i nepravilne globule OR 7,32 (95%CI 3,35-15,99) p&lt;0,0001. Nepravilne mrlje su uočene kod 90/96 displastičnih nevusa i kod 41/47 melanoma bez značajne razlike. Zaključak: Klinički displastični nevusi nisu imali kliničke karakteristike koje se obično koriste za njihov opis, te klinički nisu imali znake sumnjivih lezija. Klinički su izgledali poput banalnih nevusa. Kombinovani kliničko-dermoskospki pristup za odabir sumnjivih lezija je ukazao na značaj nekih dermoskospkih obeležja. Multikomponentna struktura i nepravilne globule su se vi&scaron;e javljale kod displastičnih nevusa. Poseban je značaj nepravilnih mrlja koje su podjednako često bile uočavane i kod displastičnih nevusa i tankih melanoma.</p> / <p>Background: Dysplastic nevus, a benign melanocytic lesion has been a matter of debate over the last thirty years, since its first description in families with melanoma. The most important controversy is that dysplastic nevus is usually considered to be suspicious, not easily distinguishable from early melanoma by its clinical appearance. This is followed by numerous unnecessary excisions of a nevus that is considered to be one of the most common in humans. Objectives: To describe the clinical and dermoscopic characteristics of dysplastic nevus, and&nbsp; to&nbsp; investigate&nbsp; its&nbsp; proportion&nbsp; in&nbsp; suspicious&nbsp; melanocytic&nbsp; lesions&nbsp; using clinicodermoscopic approach. Methods: In an analytical clinical study, in the prospective part of the study, we used a combined&nbsp; clinicodermoscopic&nbsp; approach&nbsp; according&nbsp; to&nbsp; a&nbsp; proposed&nbsp; protocol,&nbsp; to&nbsp; select lesions for excision. A total of 279 lesions were excised. Of the total number, 83 were very suspicious for melanoma, 116 where melanoma could not be excluded, and eighty were considered to be benign. Still they were excised because they were a burden for patients. Clinical appearance was studied using ABCD acronym (A for assimetry, B for border&nbsp; irregularity,&nbsp; C&nbsp; for&nbsp; color&nbsp; variegation,&nbsp; and&nbsp; D&nbsp; for diameter&nbsp; of&nbsp; more&nbsp; than&nbsp; 5mm). Dermoscopic&nbsp; description&nbsp; of&nbsp; lesions&nbsp; was&nbsp; performed&nbsp; according&nbsp; to&nbsp; algorithms Pattern Analysis and Seven-point Checklist. Results:&nbsp; After&nbsp; histopathological&nbsp; analysis&nbsp; of&nbsp; the&nbsp; 279&nbsp; lesions,&nbsp; 242&nbsp; lesions&nbsp; were&nbsp; nevi, among them 131 dysplastic nevi that were analyzed separately for the purpose of this study and 47 lesions were skin melanoma. Histopathologicaly proven dysplastic nevus originated mainly from a group of lesions clinicodermoscopily recognized as suspicious of melanoma, or a group where melanoma could not be excluded OR 2.49 (95%CI 1.51-4.11) p=0.0003. Each examined clinical feature alone or in any possible combination of features&nbsp; was&nbsp; important&nbsp; only&nbsp; for&nbsp; melanoma&nbsp; p&lt;0.0001.&nbsp; There&nbsp; were&nbsp; no&nbsp; significant differences between dysplastic nevus group and a group of nevi. Dermoscopic features were more important for the overall suspicious&nbsp; appearance. Multicomponent structure OR&nbsp; 4.84&nbsp; (95%CI&nbsp; 2.87-8,16)&nbsp; p&lt;0.0001&nbsp; and&nbsp; irregular&nbsp; globules&nbsp; OR&nbsp; 7.32&nbsp; (95%CI&nbsp; 3.35-15.99)&nbsp; p&lt;0.0001&nbsp; were&nbsp; frequent.&nbsp; Irregular&nbsp; blotches&nbsp; were&nbsp; found&nbsp; in&nbsp; 90/96&nbsp; and 41/47, dysplastic nevus and melanoma respectively, without significant differences. Conclusion:&nbsp; Clinically&nbsp; dysplastic&nbsp; nevi&nbsp; did&nbsp; not&nbsp; show&nbsp; clinical&nbsp; characteristics&nbsp; that&nbsp; were usually used to describe them, and did not show signs of suspicious lesions. Clinically, they looked more like banal nevi. The commbined clinicodermoscopic approach to select suspicious melanocytic lesions, revealed some dermoscopic features that were often seen in dysplastic nevi, like the multicomponent structure and the irregular globules, while the irregular blotches were a feature shared both by dysplastic nevi and melanoma.</p>

Le mélanome malin (MM) est un cancer très réfractaire aux thérapies anticancéreuses, dont les vincalcaloïdes (VAs). Afin d'étudier le rôle de la GSTM1 (glutathion S-transférase 1) et la MRP1 (multidrug resistance protein 1) dans la résistance acquise du MM aux VAs, nous avons établi 4 modèles cellulaires de résistance à la vincristine (CAL1R-VCR), à la vindésine (CAL1R-VDS), à la vinorelbine (CAL1R-VRB) et à la vinflunine (CAL1R-VFL), par exposition continue de cellules du MM (CAL1-wt), pendant un an, à ces anticancéreux. L'expression d'ne GSTM1 fonctionnelle est spécifiquement observée (RT-PCR, western blot, activité GST totale) dans les cellules résistantes. Le curcumin (inhibiteur de GSTM1), la BSO (inhibiteur de synthèse de glutathion) et le MK571 (inhibiteur de MRP1), réduisent considérablement le résistance acquise à la VCR et à la VDS mais pas à la VRB ou à la VFL. Toutefois, tous ces VAs réduisent spécifiquement l'activité GSTM1. Ces données montrent l'implication différentielle de GSTM1 et MRP1 dans la résistance aux VAs. Pour déterminer les mécanismes moléculaires de cette chimiorésistance, nous avons réalisé une étude pangénomique (biopuces Affymetrix HG-U133 Plus 2.00) sur les lignées CAL1 (wt et R). Le regroupement hiérarchique (par Cluster et TreeView) des données des puces a révélé une similarité entre les profils d'expression génique de CAL1R-VRB et CAL1-wt mais aussi entre ceux de CAL1R-VCR et CAL1R-VDS. L'analyse bioinformatique (par IPA) des transcrits les plus différemment exprimés entre les lignées cellulaires, a mis en évidence 6 réseaux géniques connus pour leur rôle dans la chimiorésistance tumorale. Le programme FatiGO a révélé 3 termes biologiques sur-représentés (> 60%) dans CAL1R (ribosome, filaments intermédiaires du cytosquelette, récepteurs olfactifs) tandis que l'étude fonctionnelle (invalidation génique par siRNA, test de viabilité) de GPR143, KIT et SLC45A2 (gènes interagissant avec NF-κB et CCND1 (facteurs de la chimiorésistance tumorale), très exprimés dans CAL1-wt et muets dans CAL1R) a montré la faible tendance des deux premiers à être impliqués dans la résistance aux VAs. / Malignant melanoma (MM) is a very refractory tumor to anticancer therapies, including vinca alkaloïds (VAs). To investigate the role of GSTM1 (glutathione S-transferase μ1) and MRP1 (multidrug resistance protein 1) in MM acquired resistance to VAs, we established 4 cellular models of resistance to vincristine (CAL1R-VCR), to vindesine (CAL1R-VDS), to vinorelbine (CAL1R-VRB) and to vinflunine (CAL1R-VFL), by continuous exposure of MM cells (CAL1-wt), for one year, to these anticancer agents. The expression of a functional GSTM1 is specifically observed (RT-PCR, western blot, total GST activity) in resistant cells. Curcumin (GSTM1 inhibitor), BSO (glutathione synthesis inhibitor) and MK571 (MRP1 inhibitor), considerably reduce the acquired resistance to VCR and VDS but not that to VRB or VFL. However, all these VAs specifically reduce GSTM1 activity. These data show the differential involvement of GSTM1 and MRP1 in resistance to VAs. To determine the molecular mechanisms of this chemoresistance, we performed a pangenomic study (Affymetrix HG-U133 Plus 2.00 microarrays) on the CAL1 lines (wt and R). The hierarchical clustering (by Cluster and TreeView) of array data revealed a similarity between the gene expression profiles of CAL1R-VRB and CAL1-wt, but also between those of CAL1R-VCR and CAL1R-VDS. The bioinformatic analysis (by IPA) of the most differentially expressed transcripts between cell lines, highlighted 6 gene networks known for their role in tumor chemoresistance. FatiGO program revealed 3 biological terms overrepresented (>60%) in CAL1R (ribosome, intermediate filaments of cytoskeleton, olfactory receptors), while functional study (gene invalidation by siRNA, viability test) of GPR143, KIT and SLC45A2 (genes interacting with NF-kB and CCND1 (tumor chemoresistance factors), highly expressed in CAL1-wt and mute in CAL1R) showed the weak trend of the two formers to be involved in resistance to VAs.

Le lumicanne est un petit protéoglycanne riche en leucine de la matrice extracellulaire impliqué, entre autre, dans le contrôle de l'angiogenèse, en particulier l'angiogenèse tumorale. Nous avons déjà démontré que le lumicanne inhibe la progression du mélanome in vivo. Le mécanisme d'action anti-tumoral du lumicanne a été partiellement décrit dans notre laboratoire. L'intégrine alpha2beta1 a été caractérisée comme un récepteur direct du lumicanne. Dans l'étude que nous présentons, nous avons décrit le rôle du lumicanne dans le contrôle de la transition des cellules souche mésenchymateuse (CSM) en cellules progénitrices endothéliales, pouvant contribuer à l'angiogenèse tumorale. Nous avons montré que le lumicanne inhibe spécifiquement la migration et l'invasion des CSM par une diminution de l'expression et de l'activité de la MMP-14. De plus, nous avons démontré que le lumicanne est un inhibiteur compétitif de la MMP-14. Il se lie directement au domaine catalytique de l'enzyme avec une affinité modérée (KD=275,4±16.12nM). De plus, nous avons démontré que le lumicanne diminue la phosphorylation de récepteurs (EGFR, Mer, EphB2, EphB6, ROR) et de protéines kinases (AKT, GSK3 beta et p130CAS). Une diminution de l'expression de la beta-caténine a également été détectée.Notre équipe a précédemment identifié une séquence de 17aa dans la protéine de cœur du lumicanne, la lumcorine, qui est capable de reproduire l'effet anti-migratoire du lumicanne. Nous proposons ici deux mécanismes d'action de la lumcorine: une inhibition de la phosphorylation de FAK et une diminution de l'activité de la MMP-14. De plus, nous avons identifié, au sein de la séquence de la lumcorine, un peptide court de 10aa (L9M) qui est capable de reproduire l'effet anti-tumoral de la lumcorine. Nous montrons que le peptide cyclique L9M diminue la croissance tumorale in vivo.Nos travaux permettent donc de mieux comprendre les mécanismes impliqués dans l'effet anti-tumoral du lumicanne et mettent en évidence de nouveaux peptides prometteurs pour des applications anticancéreuses. / Lumican is a small leucine-rich proteoglycan of the extracellular matrix involved in the control of angiogenesis, particularly tumor angiogenesis. We have previously demonstrated that lumican inhibits melanoma progression in vivo. The anti-tumor mechanism of action of lumican was partially described in our laboratory. The alpha2beta1 integrin was characterized as a direct receptor of lumican. In the present studies, we first described the role of lumican in the control of Mesenchymal Stem Cells (MSC) transition to functional Endothelial Progenitor Cells (EPC), which can contribute to tumor angiogenesis. We showed that lumican inhibits specifically the migration and invasion of MSC by decreasing the expression and activity of MMP-14. Moreover, we demonstrated that lumican reduces the activity of MMP-14 in melanoma cells. We next showed that lumican directly inhibits MMP-14 activity as a competitive inhibitor which binds to the catalytic domain of the enzyme with moderate affinity (KD=275.4±16.12nM). Moreover, we demonstrated that lumican decreases the phosphorylation of some cell surface receptors (EGFR, Mer, EphB2, EphB6, ROR), some kinases (AKT, GSK3 beta and p130CAS) and alters the expression of beta-catenin.Previous works from our laboratory identified a sequence of 17aa within the leucine-rich repeat 9, named lumcorin, which was able to reproduce the anti-migratory effect of lumican. Here, we propose two mechanisms of action of lumcorin: inhibition of phosphorylation of FAK and a decrease of the MMP-14 activity. We also identified in the sequence of lumcorin a short 10aa peptide (L9M) which was capable to reproduce the anti-tumor effect of lumcorin. In addition, the cyclic peptide L9M was demonstrated to reduce tumor growth in vivo.Altogether, our results help to better understand the mechanisms involved in the anti-tumor effect of lumican and identify lumican-derived peptides which could have potential anti-cancer applications.

Affinity-based proteomics offers opportunities for the discovery and validation of disease-associated proteins in human body fluids. This thesis describes the use of antibody-based immunoassays for multiplexed analysis of proteins in human plasma, serum and cerebrospinal fluid (CSF). This high-throughput method was applied with the objective to identify proteins associated to clinical variables. The main work in this thesis was conducted within the diseases of multiple sclerosis and malignant melanoma, as well as mammographic density, a risk factor for breast cancer. The suspension bead array (SBA) technology has been the main method for the work presented in this thesis (Paper I-IV). SBA assays and other affinity proteomic technologies were introduced for protein profiling of sample material obtained from clinical collaborators and biobanks. Perspectives on the validation of antibody selectivity by means of e.g. immuno-capture mass spectrometry are also provided. Paper I describes the development and application of a protocol for multiplexed pro- tein profiling of CSF. The analysis of 340 CSF samples from patients with multiple sclerosis and other neurological disease revealed proteins with potential association to disease progression (GAP43) and inflammation (SERPINA3). Paper II continued on this work with an extended investigation of more than 1,000 clinical samples and included both plasma and CSF collected from the same patients. Comparison of disease subtypes and controls revealed five plasma proteins of potential diagnostic relevance, such as IRF8 and GAP43. The previously reported associations for GAP43 and SERPINA3 in CSF was confirmed. Subsequent immunohistochemical analysis of post-mortem brain tissue revealed differential protein expression in disease affected areas. In Paper III, 150 serum samples from patients with cutaneous malignant melanoma were analyzed. Protein profiles from antibody bead arrays suggested three proteins (RGN, MTHFD1L, STX7) of differential abundance between patients with no disease recurrence and low tumor thickness (T-stage 1 and 2) compared to patients with high tumor thickness (T-stage 3 and 4) and disease recurrence. We observed MTHFD1L expression in tissue of a majority of patients, while expression of STX7 in melanoma tissue had been reported previously. Paper IV describes the analysis of protein in plasma in relation to mammographic breast density (MD), one of the strongest risk factors for the development of breast cancers. More than 1,300 women without prior history of breast cancer were screened. Linear associations to MD in two independent sample sets were found for 11 proteins, which are expressed in the breast and involved in tissue homeostasis, DNA repair, cancer development and/or progression in MD. In conclusion, this thesis describes the use of multiplexed antibody bead arrays for protein profiling of serum, plasma and CSF, and it shortlists disease associated proteins for further validation studies. / <p>QC 20170302</p>

La protéine suppresseur de tumeur p53 est soumise à de complexes régulations transcriptionnelles et posttraductionnelles. La découverte d’isoformes de p53 a introduit un degré de complexité supplémentaire auxmécanismes de régulation des fonctions de p53. On dénombre à ce jour douze isoformes qui diffèrent de p53dans leurs domaines N- et C-terminal. Cependant, les modes d’expression et de fonction de ces isoformes restentà être clarifiés.Dans cette thèse, nous nous sommes intéressés aux deux isoformes Δ40p53 et Δ133p53, en analysant leurinteraction avec p53 et en mesurant leur expression dans les mélanomes, un type de cancer où p53 est trèsrarement mutée. Nous montrons que Δ40p53 peut moduler l’activité de p53 avec un effet bi-phasique, tantôtactivateur ou répresseur du niveau d’expression et des fonctions de p53. Δ133p53 est produite par un promoteurP2 localisé dans le gène TP53. Nous avons montré qu’en réponse à un stress génotoxique, l’expression de Δ133p53 est régulée par p53, qui se lie au promoteur P2. Ceci suggère une boucle d’auto-régulation par p53, quiest capable de contrôler l’expression d’une isoforme inhibant ses propres fonctions. Enfin, les isoformes Δ40p53 et Δ133p53 sont surexprimées dans les tumeurs métastatiques de mélanomes comparées aux tumeurs noninvasives,suggérant à ces isoformes un rôle dans l’inactivation de p53 dans les cancers.Ainsi, Δ40p53 et Δ133p53 interagissent avec p53 de façon complexe, avec des effets plus contrastés que lasimple inhibition de l’activité suppressive de p53. Les isoformes de p53 jouent ainsi un rôle majeur dans lesactivités basales de p53, ainsi que dans l’inactivation fonctionnelle de p53 dans les cancers. / The p53 tumour suppressor protein has a highly complex pattern of regulation at transcriptional and posttranslationallevels. The discovery of p53 isoforms has added another layer of complexity to the mechanisms thatregulate p53 functions. Indeed, p53 is expressed as 12 isoforms that differ in their N- and C-terminus due toalternative splicing, promoter or codon initiation usage. So far, there is limited understanding of the patterns ofexpression and of the functions of each of these isoforms.In this Thesis, we have focused on the two major p53 N-terminal isoforms, Δ40p53 and Δ133p53. We haveanalysed their patterns of interactions with the full-length p53 and we have investigated whether their expressioncould be deregulated in melanoma, a cancer type in which TP53 mutations are rare. Our results show that Δ40p53 can modulate p53 function with a bi-phasic effect, acting as a repressor or activator of p53 to control itslevels and activity. Moreover, we demonstrate that the internal P2 promoter produces Δ133p53 and is regulatedby p53 in response to genotoxic stress, identifying a novel auto-regulatory loop by which p53 may control theexpression of an isoform acting as an inhibitor of p53 activities. Finally, we show that mRNAs encoding Nterminalisoforms are often over-expressed in highly metastatic melanoma when compared to non-invasiveforms, suggesting that N-terminal isoforms contribute to functionally inactivate p53. Thus, we propose that Δ40p53 and Δ133p53 modulate p53 functions within dynamic fluctuations of aprotein network. Hence, p53 isoforms may have a major role in basal p53 activities as well as in the functionalinactivation of p53 in cancer cells.

Univerzita Karlova v Praze Přírodovědecká fakulta Studijní program: Vývojová biologie (P1520) Studijní obor: Vývojová biologie (1501V000) Oleksandr Chernyavskiy Zdokonalené metody pro snímání obrazových dat a analýzu tkání a buněk pomocí konfokální a multifotonové mikroskopie Improved Methods of Image Acquisition and Analysis of Tissues and Cells by Confocal and Multi-Photon Microscopy Abstrakt disertační práce Školitel: RNDr. Lucie Kubínová CSc Praha, 2015 Abstract The aim of this study was to develop methods and approaches for image acquisition with subsequent image analysis of data, obtained by confocal and two- photon excitation microscopy as well as their combination, enabling new possibilities of visualization and assessment of information on biological tissues and cell structures in 3D and their measurement. We focused on methods that exploited advantages of confocal and multi-photon excitation microscopy. Our further aim was to demonstrate the applicability of non-invasive approach for in vivo applications, usefulness and the relevance of these methods in several special biological applications with emphasis on improved image acquisition, analysis and evaluation of real biological specimens. The present work was not oriented on just one specific biological problem, but rather to methodological...

Crotamina é um peptídeo de baixo peso molecular composto de 42 resíduos de aminoácidos. A presença de nove resíduos de lisina e três pontes dissulfeto confere a crotamina compactibilidade elevada, estabilidade, carga positiva líquida, apresentando similaridade estrutural com defensina, um peptídeo antimicrobiano do epitélio humano. Crotamina até 10,0 mM é inócua para células normais (e.g., fibroblastos humanos e células-tronco embrionárias de murinos), mas letal para células tumorigênicas CHO-K1. Aqui, nós demonstramos que 1 mg crotamina (0,2 mM) foi citotóxica para céluas B16-F10, Mia Paca-2 e SK-Mel-28 células in vitro, como se provou pelos ensaios de MTT, coloração com Hoechst 33342 e Iodeto de Propídio. Adicionalmente, nós avaliamos o efeito citotóxico da crotamina sobre a invasão do melanoma cutâneo primário produzido pela implantação de células B16-F10 em camundongos C57BL/6J. O efeito da crotamina em melanoma cutâneo foi estudado em dois grupos de camundongos (tratados com crotamina e não tratados), sendo cada grupo composto por 35 camundongos. Cada animal do grupo, tratado com crotamina, recebeu diariamente 1,0 mg/100 mL de crotamina (2 mM) , enquanto aqueles não tratados receberam apenas placebo. O tratamento com crotamina durou 21 dias. O atraso da implantação do tumor e redução da mortalidade foi observado para o grupo tratado com crotamina quando comparados ao grupo controle não-tratados. O peso médio d o tumor no grupo não tratado foi 4,60 g, enquanto nos tratados com crotamina foi de apenas de 0,27 g, quando detectados. O cálculo de sobrevida estimado de Kaplan Meier indicou que o grupo tratado com crotamina apresentou diferenças significativas, número de sobreviventes (n = 28/35), em comparação ao grupo não tratado (n = 7/35). Os dados de nossa pesquisa demonstram que a crotamina possui in vitro e in vivo uma atividade citotóxica específica e seletiva contra tipos de tumores de crescimento rápido e agressivo. / Crotamine is a low molecular weight peptide composed of 42 amino acid residues. The presence of nine lysine residues and three disulfide bonds confers to crotamine high compactness, stability, net positive charge, and overall structural similarity to b-defensin 2, an antimicrobial peptide from the human epithelia. Crotamine, up to 10.0 mM, is innocuous to normal cells (e.g., human fibroblasts and murine embryonic stem cells), but lethal for tumorigenic CHO-K1 cells. Herein, we demonstrated that 1 mg of crotamine (0,2 mM) was cytotoxic for B16-F10, Mic PaCa-2 and SK-Mel-28 cells in vitro, as proved by MTT assay, Hoechst 33342 and Propidium iodide staining. Additionally, we evaluate the cytotoxic effect of crotamine on primary invasion of cutaneous melanoma produced by injection of B16-F10 cells into C57Bl/6J mice. The effect of crotamine on cutaneous melanoma was studied on two groups of mice (crotamine-treated and non-treated), each composed by 35 mice. Each animal in crotamine-treated group received daily 1 mg/100 mL of crotamine (2 mM), while those non-treated received placebo. Crotamine treatment lasted for 21 days. The delay of tumor implantation and reduction of death was observed for crotamine-treated group when compared to control non-treated group. Average weight of tumor in non-treated group was 4.60 g, while in crotamine-treated, was only about 0.27 g, if detectable. The Kaplan Meier estimator indicated that crotamine-treated group present significant survival number (n=28/35) in comparison with non-treated group (n=7/35). Data from our research demonstrate that crotamine possesses in vitro and in vivo specific and selective cytotoxic activity against aggressive and fast growing types of tumor.