This thesis describes the design and synthesis of compounds that are intended to inhibit serine and aspartic proteases. The first part of the text deals with preparation of inhibitors of the hepatitis C virus (HCV) NS3 serine protease. Hepatitis C is predominantly a chronic disease that afflicts about 170 million people worldwide. The NS3 protease, encoded by HCV, is essential for replication of the virus and has become one of the main targets when developing drugs to fight HCV. The inhibitors discussed here constitute surrogates for the widely used N-acyl-hydroxyproline isostere designated 4-hydroxy-cyclopentene. The stereochemistry of the 4-hydroxy-cyclopentene scaffold was determined by nuclear overhauser effect spectroscopy (NOESY) and the regiochemistry by heteronuclear multiple bond correlation (HMBC). The scaffold was decorated with different substituents to obtain both linear and macrocyclic HCV NS3 protease inhibitors that display low nanomolar activity. The second part of the thesis describes the design and synthesis of potential aspartic protease inhibitors. The hydroxyethylene motif was used as a noncleavable transition state isostere. The synthetic route yielded a pivotal intermediate with excellent stereochemical control, which was corroborated by NOESY experiments. This intermediate can be diversified with different substituents to furnish novel aspartic protease inhibitors. / <p>Report code: LIU-TEK-LIC-2006:45</p>

Taxol™, isolated from the bark of Taxus brevifolia in the late 1960s, and the semisynthetic analog Taxotere™ have proven clinical importance for the treatment of ovarian and breast cancer. Taxol™ exerts its biological effect by binding to polymerized tubulin and stabilizing the resulting microtubules. Studies aimed at understanding the biologically active conformation of taxol and its binding environment on β-tubulin are described. This knowledge is important because it could lead to the design of structurally less complicated drugs with better efficacy and better bioavailability. Moreover, the information can be extended to other natural products that possess microtubule-stabilizing properties similar to Taxol™. In this work, the synthesis of a triply labeled taxol analog is described as well as REDOR studies of this compound complexed to tubulin are in progress. Macrocyclic analogs of taxol have been prepared and their biological activities were evaluated. Chemical modeling of these analogs and their activities agrees with the hypothesis that Taxol™ adopts T-shaped conformation. Difficulties were encountered with the key ring-closing metathesis strategy, suggesting that a more flexible and efficient macrocyclization method will be needed to synthesize additional macrocyclic analogs. / Ph. D.

Le fluor a gagné un intérêt croissant dans de nombreux domaines de la chimie organique. De nombreuses méthodes de fluoration ont vu le jour afin de répondre à une demande croissante en molécules fluorées les plus diverses. Cependant certains synthons restent difficiles à obtenir par des moyens efficaces. Une réaction de fluoration électrophile d’allylsilanes a été développé afin d’accéder à des motifs α-fluroénamides hautement fonctionnalisés. Ces α-fluroénamides peuvent être de types variés : benzylamines, anilines, ou alkyles… Un accent particulier a été mis sur des dérivés d’acides aminés pouvant ainsi servir de peptido-mimétiques. Dans un souci d’accéder à une plus grande variété moléculaire, la réactivité de ces motifs fluorés allyliques vis-à-vis des réactions de métathèses croisées, très peu étudiée, a été investiguée. La faisabilité de ces deux méthodologies a été démontrée par la synthèse d’une molécule cible originale. Le fluor, principalement utilisé pour ses propriétés physico-chimiques et pharmacocinétiques a ici pu être exploité pour sa réactivité. Une réaction d’amination catalytiques sur les dérivés α-fluroénamides fonctionnalisés a été développée, permettant l’incorporation de nucléophiles aminés variés. Cette réaction permet de produire des motifs γ-aminomides-α,β-insaturés, mis à profit dans la synthèse d’alcaloïdes bicycliques. / Fluor has gained popularity in various fields of organic chemistry. Numerous fluorination reactions have been developed to answer increasing demand in diverse Fluor-containing molecules. Nevertheless, the syntheses of some structures are still unanswered. In this work, the electrophilic fluorination of allylsilanes has been developed allowing access to highly functionalised fluoroenamides. Said α-fluroenamides can be of various types such as benzylamines, anilines or alkyls. Focus has been brought on amino acids derivatives which could be used as peptidomimetics. Reactivity of those allylic fluorides towards cross-metathesis reactions has been investigated which has been very rarely reported yet. Validation of those two methodologies has been made in a form of the synthesis of a novel active molecule. Fluorine has been mainly used for the properties it brings in molecules it is incorporated in. In this case, fluorine has been exploited for its reactivity. A catalytic amination reaction has been developed on functionalised α-fluroénamides giving access to α,β-insatured-γ-aminomides.

In this thesis a methodology to synthesize anti-β-hydroxy-α-amino esters possessing olefins has been investigated. The developed procedures originate from two already established procedures in which α-amido-β-keto esters, which do not contain olefins, has been stereoselectively reduced to the corresponding anti-β-hydroxy-α-amino alcohols via asymmetric transfer hydrogenation coupled with dynamic kinetic resolution. Both established methods, one solvent free and one emulsion procedure, have been investigated on the expanded substrate scoop. Four different α-amido-β-keto ester containing olefins were tested and it was found that the ketones were reduced to desired anti-β-hydroxy-α-amino esters in both procedures, but also side products were formed where the olefins were reduced. The ratio of the different products was dependent on the structure of the starting α-amido-β-keto ester, ligand used on the catalyst and reaction conditions such as number of equivalents of base and reaction temperature. The diastereoselectivity for the desired products was in favor of the anti stereoisomer, however, the dr was worse than in the established procedures. The usefulness of this methodology was then demonstrated by a formal total synthesis of Sphingosine.

Actuellement, les nucléosides représentent une classe majeure de composés dans les différentes thérapies anti-virales. Leur développement au cours des 50 dernières années a contribué à la mise sur le marché d'une quarantaine de composés, notamment dans la lutte des hépatites, des herpès et du VIH. Les infections virales représentent cependant toujours un large problème de santé publique, de par l'apparition de résistances aux médicaments existants ainsi que de nouvelles espèces virales. Il est donc nécessaire de développer de nouveaux antiviraux plus actifs et plus sûrs. Dans ce manuscrit, il est décrit la synthèse métallo-catalysée d'acyclonucléosides phosphonate innovants, modifiés sur la partie phosphonate, nucléobase et sur la chaîne acyclique. Pour ce faire, nous nous sommes appuyés sur des réactions de métathèses croisées et la synthèse convergente d'un large panel de nucléobases et phosphonates modifiés. Une importance toute particulière a été donnée à l'utilisation de nouvelles techniques d'activation comme le micro-onde ou les ultrasons. Ces divers procédés de synthèse ont permis la synthèse de trois séries d'alkényl phosphononucléosides, qui se sont révélés d'une activité antivirale remarquable sur certains virus à herpès, comme le VZV ou le CMV. / Nucleosides represents a major class of compounds in different antiviral chemotherapies. Their development from now 50 years has led to the emergence of nearly 40 compounds, to contain many epidemics and in the fight against viral infections as HIV, hepatitis or herpes. Viral infections still represent a tremendous problem in public health with the emergence of resistance to known drugs and the appearance of new viruses. In this context, it's essential to develop new antivirals with higher activity and safer. This manuscript describes organo-metallic syntheses of new modified acyclonucleoside phosphonates, on the nucleobase, the phosphonate or the acyclic spacer. Thus, the use of cross-metathesis and convergent syntheses of a broad panel of nucleic bases and modified phosphonates represents a cornerstone of our work. A particular importance was given to the use of new activations way, as ultrasound or microwave irradiation. Those processes allowed us to synthetize three new families of acyclic phosphononucleosides, which revealed a remarkable antiviral activity against some herpes viruses, as VZV or CMV.

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Conjugated organic polymers have attracted immense interest for use in the active layer of photovoltaic cells, electroluminescent displays and diagnostic sensors. Precise control of the chemical structure of these conjugated materials is essential to achieve better device performance and certain structural aspects which have received minimal investigation include; the nature of the end groups, the precise control of the molecular weight and the formation of novel polymer topologies. Absolute control of these factors, in particular the end groups, has the potential to further tune the electro-optical properties, eliminate charge trapping and reactive sites, and facilitate block copolymer formation. The ring opening metathesis polymerisation of highly strained cyclophanediene monomers has proven to be an advantageous route to obtain soluble poly(p-phenylenevinylene)s (PPVs). In an extension of this previous work PPVs with both a pristine polymer backbone microstructure and a range of well-defined functional end groups have been prepared. These polymers exhibited excellent degrees of functionality, relatively narrow unimodal distributions and degrees of polymerisation much higher than those attainable by alternate routes. In particular the incorporation of an α-bromoester end group directly resulted in PPVs which were effective macroinitiators in the atom transfer radical polymerisation of methyl methacrylate. The diblock copolymers prepared by this route were isolated with narrow polydispersities, unimodal distributions and were free from homopolymer impurities. This method of preparing rod-b-coil diblock copolymers, where the properties of the two segments can readily be modified, provides access to materials which are of interest for both their self-assembly ability and for the development of a much required phase diagram in this area. Cyclic PPVs are of synthetic interest both for the absence of any end groups and for an infinitely long π-conjugated backbone, both of which are expected to contribute to unique electro-optical properties. The preparation of these target polymers was investigated by the ring expansion metathesis polymerisation of the cyclophanediene monomers. The formation of purely cyclic, low molecular weight PPVs was found to be highly dependent on both the reaction conditions used and the nature of the solubilising substituents. For example the preparation of purely cyclic PPVs with alkoxy side chains was unsuccessful, however the incorporation of alkyl side chains allowed for the successful isolation of the desired cyclic polymers.