The objective of this research was to isolate genes encoding isoforms of the enzyme D-myo-inositol 3-phosphate synthase (MIPS, E.C. 5.5.1.4) from soybean and to characterize their expression, especially with respect to their involvement in phytic acid biosynthesis. A MIPS-homologous cDNA, designated GmMIPS1, was isolated via PCR using total RNA from developing seeds. Southern blot analysis and examination of MIPS-homologous soybean EST sequences suggested that GmMIPS1 is part of a multigene family of at least four similar members. The sequences of promoter and genomic regions of GmMIPS1 and GmMIPS2 revealed a high degree of sequence conservation. Northern and western blot analyses showed that MIPS transcript and protein are abundantly expressed early in seed development. Immunolocalization of MIPS protein in developing seeds confirmed expression of MIPS early in seed development and correlated MIPS protein accumulation in soybean seed tissue with tissues in which phytic acid is known to accumulate. The promoter region of GmMIPS1 was isolated and analyzed for possible seed-specificity using promoter:GUS fusions. Two GmMIPS1 promoter fragments were capable of conferring GUS expression when bombarded directly into developing soybean seeds. However, preliminary bombardment experiments into soybean cell suspension culture indicated that both promoter fragments drove expression of GUS in undifferentiated tissue, indicating a potential lack of seed-specificity. / Master of Science

Cette thèse décrit le développement de capteurs à fibre optique hautement sélectifs, utilisant des polymères à empreintes moléculaires (MIPs, de l’anglais molecularly imprinted polymers) comme éléments de reconnaissance, et se basant sur la fluorescence pour la détection. Nous avons étendu l’étude à d’autres types de capteurs et de méthodes de détection optiques, toujours basés sur les MIPs. Les MIPs sont des récepteurs synthétiques biomimétiques possédant des cavités spécifiques pour une molécule cible. Produits par un processus de moulage à l’échelle moléculaire, les MIPs sont capables de reconnaître et de se lier à leurs molécules cibles, avec des spécificités et affinités comparables aux récepteurs naturels. De plus, comparé aux récepteurs biologiques, les MIPs sont plus stables, moins chers et plus faciles à intégrer dans les procédés standard industriels de fabrication. Ainsi, les MIPs apparaissent comme une alternative intéressante aux biomolécules entant qu’éléments de reconnaissance dans les biocapteurs. Dans la première partie de la thèse (Chapitre 2), les MIPs ont été synthétisés en tant que micropointe à l’extrémité d’une fibre optique, par polymérisation in-situ induite par un laser en seulement quelques secondes. Les paramètres photoniques et physico-chimiques ont été optimisés pour moduler les propriétés des micro-objets de polymères. Des nanoparticules d’or ont été incorporées dans la micropointe de MIP afin d’induire une exaltation du signal. Afin de prouver l’efficacité de notre capteur, les études initiales ont été réalisées avec un MIP synthétisé avec le Ncarbobenzyloxy- L-phenylalanine (Z-L-Phe) comme template et le dérivé d’acide aminé fluorescentdansyl-L-phenylalanine, comme analyte. La fluorescence a été collectée de l’extérieur au niveau de la micropointe par une fibre optique connectée à un spectrofluorimètre, ou par collection du signal fluorescent ré-émis dans l’un des bras d’une fibre bifurquée en Y. L’analyse fluorescent a pu être détecté à des concentrations de l’ordre du nM. Afin de quantifier les analytes non fluorescents, un monomère fluorescent, possédant un groupe naphthalimide, a été incorporé dans le MIP ; celui-çidéployant une augmentation de la fluorescence quand l’analyte se lie. Utilisant ce système avec un MIP spécifique pour l’herbicide 2,4-D (acide 2,4-dichlorophénoxyacétique), des concentrations aussi basses que 2,5 nM en 2,4-D ont pu être mesurées. Le capteur MIP a également été appliqué à des analytes d’intérêt pour la sécurité alimentaire et le domaine nanostructurées. Cette étude pose les bases pour le développement futur de nanocapteurs et de Dans la dernière partie (Chapitre 4), une méthode d’analyse novatrice, basée sur l’utilisation des MIPs et l’analyse par polarisation de fluorescence, a été développée en vue de permettre la quantification directe et rapide d’analytes dans des échantillons alimentaires et environnementaux. Cette technique a été appliquée avec succès pour détecter des antibiotiques fluoroquinolones dans l’eau du robinet et le lait, en-dessous de leur limite maximale de résidus. En conclusion, nous pouvons dire que ce travail ouvre la voie vers l'application d'une nouvelle génération de capteurs optiques portables, robustes et miniaturisables basés sur les MIPs, pour des mesures «sur-site » et la quantification en temps réel d’analytes biologiques et environnementaux dans des milieux complexes. / This thesis describes the development of highly selective fiber optic sensors using molecularly imprinted polymers (MIPs) as recognition elements associated with fluorescence for detection. Additionally, we extended the study to the development of other MIP-based optical sensors and sensing methods. MIPs are synthetic biomimetic receptors possessing specific cavities designed for a target molecule. Produced by a templating process at the molecular level, MIPs are capable of recognizingand binding target molecules with selectivities and affinities comparable to those of natural receptors. Compared to biological recognition elements, MIPs are more stable, cheaper and easier to integrate into standard industrial fabrication processes. Hence, MIPs have become interesting alternatives to biomolecules as recognition elements for biosensing. In the first part of this thesis (Chapter 2), MIPs were synthesized by in-situ laser-induced photopolymerization in only a few seconds, as a micrometer-sized tip at the extremity of a telecommunication optical fiber. Photonic and physico-chemical parameters were optimized to tailor the properties of the polymer micro-objects. Gold nanoparticles were incorporated into the MIP microtip for signal enhancement. To prove the efficiency of the sensor, initial studies were performed with a MIP templated with N-carbobenzyloxy-L-phenylalanine (Z-L-Phe) and the fluorescent amino acid derivative dansyl-L-phenylalanine as analyte. The fluorescence was collected either externally at the tip level by an optical fiber connected to a spectrofluorimeter or by collection of the fluorescent signal re-emitted into the fiber through the second arm of a Y-shaped bifurcated fiber. The fluorescent analyte could be detected in the low nM concentrations. In order to monitor nonfluorescent analytes, a naphthalimide-based fluorescent monomer was incorporated into the MIP during its synthesis; fluorescence enhancement was observed when analyte binding occurs. Using this system, the sensor containing a MIP specific for the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D), could detect and quantify this analyte at concentrations as low as 2.5 nM. The signaling MIP-based sensor was also applied to analytes of interest for food safety and biomedical applications, such as the mycotoxin citrinin and the sphingolipid, D-erythro-sphingosine-1-phosphate. In the second part of the thesis (Chapter 3), a different type of fiber optic sensor: cheap, fast and made for “single-use”, was developed by using 4-cm long disposable polystyrene evanescent wave optical fiber waveguides. The coating of the MIP was either performed ex-situ, by dip-coating the fiber in a suspension of MIP particles synthesized beforehand, or in-situ by evanescent-wave photopolymerization directly on the fiber. The resulting fiber optic sensor could detect 2,4-D in the low nM range and demonstrated specific and selective recognition of the herbicide over its structural analogues and other non-related carboxyl-containing analytes. Additionally, we demonstrated the versatility of the system by applying the evanescent wave fiber optic sensor to detect citrinin, a mycotoxin, by simply coating the waveguide with a MIP specific for citrinin. This type of technology could possibly be extended to detect other carboxyl-containing analytes, as long as a specific MIP for the concerned analyte is available. In parallel, the technique of evanescent-wave photopolymerization was used for the synthesis of signaling MIP microdots on continuous and nanostructured gold films. This study lays the foundations for future development of plasmonic MIP nanosensors and microchips. In the last part of the thesis (Chapter 4), an innovative sensing method, based on the use of MIPs and analysis by fluorescence polarization, was developed in order to allow the fast and directquantification of analytes in food and environmental samples.

Cette thèse propose une approche rationnelle pour le design de polymères à empreintes moléculaires (MIPs) pour la détection de nitro-explosifs. Les polymères à empreintes moléculaires qui miment la reconnaissance moléculaire biologique, ont l’avantage d’être stables dans des environnements sévères et peuvent adopter différentes formes physiques pour le couplage avec des transducteurs. Leur synthèse est basée sur la co-polymérisation de monomères fonctionnels et réticulants en présence de la molécule cible, ou comme dans cette thèse, d’un analogue ayant une structure proche de celle de la molécule cible. Cela conduit à la formation d’un réseau polymérique tridimensionnel rigide avec des sites de liaison complémentaires en taille, forme et position des groupes fonctionnels de la molécule cible ou de l’analogue. Pour identifier le meilleur monomère fonctionnel pour notre molécule cible, une approche rationnelle basée sur la modélisation moléculaire, la résonance magnétique nucléaire (RMN) et le titrage par calorimétrie isotherme (ITC) a été utilisée. Elle permet d’optimiser le mélange de pré-polymérisation pour identifier le monomère fonctionnel interagissant le plus fortement avec la molécule cible. Les résultats obtenus ont été confrontés à des études de liaison à partir de polymères synthétisés. La formulation polymérique ainsi conçue est intégrée aux surfaces du transducteur sous forme de nanoparticules, de films et de nanoparticules incorporés dans des films de polydopamine électropolymérisés. En plus des polymères traditionnels obtenus par polymérisation radicalaire classique sous forme de particules, des films de MIP à base de polydopamine électropolymérisés ont été étudiés en tant qu'approche alternative pour la détection électrochimique de nitro-explosifs. / This thesis proposes a rational design approach towards molecularly imprinted polymers (MIPs) for sensing nitro-explosives. Molecularly imprinted polymers are mimicking biological molecular recognition. They have the advantage to be stable in harsh environments and can be tailored into different physical forms for interfacing with transducers. Their synthesis is based on the co-polymerization of functional and cross-linking monomers in the presence of the target analyte or, as in this thesis, with a structural analogue leading to a rigid three-dimensional polymer network with binding sites complementary to the template in size, shape and position of the functional groups. The choice of the functional monomer was carried out with a rational design approach combining molecular modelling, nuclear magnetic resonance (NMR) and isothermal calorimetry (ITC) studies. This allows to optimize the pre-polymerization mixture in order to get strong complexation between the functional monomer and the template. The obtained results were confronted with binding studies performed on synthesized polymers. The thus designed polymer formulation was interfaced with transducer surfaces in form of nanoparticles, films and nanoparticles embedded into electro-polymerized polydopamine films. In addition to the traditional MIPs by free radical polymerization, molecularly imprinted in-situ electro-polymerized polydopamine films were investigated as an alternative approach for sensing nitro-explosives electrochemically.

Les chiffres des statistiques du cancer colorectal en France et dans le mondemontrent la nécessité de développement de plateformes technologiques plus rapides,sensibles et spécifiques pour assurer le diagnostic du cancer. Un diagnostic rapide va ainsiaider à améliorer l’état de santé et réduire le temps d’attente des résultats qui peut être ungrand facteur de stress pour les patients. L’analyse des biomarqueurs dans le sang, lesurines et autres fluides corporels est l’une des méthodes appliquées pour la détectionprécoce de la maladie. Dans le cadre de ce projet des nucléosides urinaires ont été identifiéscomme biomarqueurs pour le cancer colorectal. Financée par l’Agence Nationale de laRecherche (ANR), à travers le projet CancerSensor (programme TECSAN), cette thèse s’estdéroulée au sein de l’équipe MDA (Microsystèmes de Détection Acoustique) du laboratoireIMS. Dans le cadre de ce projet, nous avons proposé une solution technologique dedétection et de suivi de biomarqueurs du cancer colorectal. Notre choix de la stratégie dedétection s’est porté sur les polymères à empreintes moléculaires comme élément dereconnaissance des biomarqueurs. Celui-ci sera associé à un transducteur acoustique àondes de Love mis au point lors de travaux précédents au sein de l’équipe MDA. Lebiocapteur ainsi développé va cibler les nucléosides mis en évidence pour le cancercolorectal. / Colorectal cancer statistics in France and all over the world demonstrate theneed for fast, sensitive and specific technological platforms development for cancerdiagnosis. A rapid diagnosis will improve the patients’ health status and reduce the resultswaiting time which could be a great stress factor. Biomarkers analysis in blood, urine andother body fluids is recognized as one of the applied methods for early cancer detection. Inframe of this project, urinary nucleosides have been identified as colorectal cancerbiomarkers. Funded by the National Research Agency (ANR), through the cancer sensorproject (TECSAN program), this thesis was carried out in IMS laboratory. Hence, a colorectalcancer biomarkers detection and monitoring technological solution has been proposed. Inour detection strategy, Molecularly Imprinted Polymers (MIP) has been identified asbiomarker recognition element. The MIP layer has been associated to Love Wave acoustictransducer. This biosensor will sense the identified colorectal cancer nucleosides.

This thesis aimed at elaborating an optical sensor to detect molecules in a biological fluid. Two steroids and a xenobiotic were identified as biomarkers released in some body fluids: cyproterone acetate, cortisol and 2,4-dichlorophenoxyacetic acid respectively. On one hand, detection was performed by Molecularly Imprinted Polymers (MIPs). These tailor-made synthetic receptors display numerous qualities that foster their integration in sensors. MIPs were therefore developed against the targeted analytes. Formulation optimization was led thanks to experimental designs. On the other hand, optical transduction was made possible thanks to the structuring of a polymer into a photonic crystal. Opals were manufactured with a new process suitable for large scales and were used to mold MIPs in inverse opals. Thus, submicron structures of the polymer are responsible for the color of the sensor. A change of color is triggered by the recognition of the analyte by the polymer (upon swelling). Polymers studied displayed sufficient swelling observed by spectrophotometry. Finally, the work of this thesis consisted in elaborating polymer formulations and their integration in a sensor so as to detect an analyte with direct, rapid and unobtrusive means.

This thesis describes the development of highly selective fiber optic sensors using molecularly imprinted polymers (MIPs) as recognition elements associated with fluorescence for detection. Additionally, we extended the study to the development of other MIP-based optical sensors and sensing methods. MIPs are synthetic biomimetic receptors possessing specific cavities designed for a target molecule. Produced by a templating process at the molecular level, MIPs are capable of recognizingand binding target molecules with selectivities and affinities comparable to those of natural receptors. Compared to biological recognition elements, MIPs are more stable, cheaper and easier to integrate into standard industrial fabrication processes. Hence, MIPs have become interesting alternatives to biomolecules as recognition elements for biosensing. In the first part of this thesis (Chapter 2), MIPs were synthesized by in-situ laser-induced photopolymerization in only a few seconds, as a micrometer-sized tip at the extremity of a telecommunication optical fiber. Photonic and physico-chemical parameters were optimized to tailor the properties of the polymer micro-objects. Gold nanoparticles were incorporated into the MIP microtip for signal enhancement. To prove the efficiency of the sensor, initial studies were performed with a MIP templated with N-carbobenzyloxy-L-phenylalanine (Z-L-Phe) and the fluorescent amino acid derivative dansyl-L-phenylalanine as analyte. The fluorescence was collected either externally at the tip level by an optical fiber connected to a spectrofluorimeter or by collection of the fluorescent signal re-emitted into the fiber through the second arm of a Y-shaped bifurcated fiber. The fluorescent analyte could be detected in the low nM concentrations. In order to monitor nonfluorescent analytes, a naphthalimide-based fluorescent monomer was incorporated into the MIP during its synthesis; fluorescence enhancement was observed when analyte binding occurs. Using this system, the sensor containing a MIP specific for the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D), could detect and quantify this analyte at concentrations as low as 2.5 nM. The signaling MIP-based sensor was also applied to analytes of interest for food safety and biomedical applications, such as the mycotoxin citrinin and the sphingolipid, D-erythro-sphingosine-1-phosphate. In the second part of the thesis (Chapter 3), a different type of fiber optic sensor: cheap, fast and made for "single-use", was developed by using 4-cm long disposable polystyrene evanescent wave optical fiber waveguides. The coating of the MIP was either performed ex-situ, by dip-coating the fiber in a suspension of MIP particles synthesized beforehand, or in-situ by evanescent-wave photopolymerization directly on the fiber. The resulting fiber optic sensor could detect 2,4-D in the low nM range and demonstrated specific and selective recognition of the herbicide over its structural analogues and other non-related carboxyl-containing analytes. Additionally, we demonstrated the versatility of the system by applying the evanescent wave fiber optic sensor to detect citrinin, a mycotoxin, by simply coating the waveguide with a MIP specific for citrinin. This type of technology could possibly be extended to detect other carboxyl-containing analytes, as long as a specific MIP for the concerned analyte is available. In parallel, the technique of evanescent-wave photopolymerization was used for the synthesis of signaling MIP microdots on continuous and nanostructured gold films. This study lays the foundations for future development of plasmonic MIP nanosensors and microchips. In the last part of the thesis (Chapter 4), an innovative sensing method, based on the use of MIPs and analysis by fluorescence polarization, was developed in order to allow the fast and directquantification of analytes in food and environmental samples.

This thesis describes the development of highly selective fiber optic sensors using molecularly imprinted polymers (MIPs) as recognition elements associated with fluorescence for detection. Additionally, we extended the study to the development of other MIP-based optical sensors and sensing methods. MIPs are synthetic biomimetic receptors possessing specific cavities designed for a target molecule. Produced by a templating process at the molecular level, MIPs are capable of recognizingand binding target molecules with selectivities and affinities comparable to those of natural receptors. Compared to biological recognition elements, MIPs are more stable, cheaper and easier to integrate into standard industrial fabrication processes. Hence, MIPs have become interesting alternatives to biomolecules as recognition elements for biosensing. In the first part of this thesis (Chapter 2), MIPs were synthesized by in-situ laser-induced photopolymerization in only a few seconds, as a micrometer-sized tip at the extremity of a telecommunication optical fiber. Photonic and physico-chemical parameters were optimized to tailor the properties of the polymer micro-objects. Gold nanoparticles were incorporated into the MIP microtip for signal enhancement. To prove the efficiency of the sensor, initial studies were performed with a MIP templated with N-carbobenzyloxy-L-phenylalanine (Z-L-Phe) and the fluorescent amino acid derivative dansyl-L-phenylalanine as analyte. The fluorescence was collected either externally at the tip level by an optical fiber connected to a spectrofluorimeter or by collection of the fluorescent signal re-emitted into the fiber through the second arm of a Y-shaped bifurcated fiber. The fluorescent analyte could be detected in the low nM concentrations. In order to monitor nonfluorescent analytes, a naphthalimide-based fluorescent monomer was incorporated into the MIP during its synthesis; fluorescence enhancement was observed when analyte binding occurs. Using this system, the sensor containing a MIP specific for the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D), could detect and quantify this analyte at concentrations as low as 2.5 nM. The signaling MIP-based sensor was also applied to analytes of interest for food safety and biomedical applications, such as the mycotoxin citrinin and the sphingolipid, D-erythro-sphingosine-1-phosphate. In the second part of the thesis (Chapter 3), a different type of fiber optic sensor: cheap, fast and made for "single-use", was developed by using 4-cm long disposable polystyrene evanescent wave optical fiber waveguides. The coating of the MIP was either performed ex-situ, by dip-coating the fiber in a suspension of MIP particles synthesized beforehand, or in-situ by evanescent-wave photopolymerization directly on the fiber. The resulting fiber optic sensor could detect 2,4-D in the low nM range and demonstrated specific and selective recognition of the herbicide over its structural analogues and other non-related carboxyl-containing analytes. Additionally, we demonstrated the versatility of the system by applying the evanescent wave fiber optic sensor to detect citrinin, a mycotoxin, by simply coating the waveguide with a MIP specific for citrinin. This type of technology could possibly be extended to detect other carboxyl-containing analytes, as long as a specific MIP for the concerned analyte is available. In parallel, the technique of evanescent-wave photopolymerization was used for the synthesis of signaling MIP microdots on continuous and nanostructured gold films. This study lays the foundations for future development of plasmonic MIP nanosensors and microchips. In the last part of the thesis (Chapter 4), an innovative sensing method, based on the use of MIPs and analysis by fluorescence polarization, was developed in order to allow the fast and directquantification of analytes in food and environmental samples.

Submitted by Biblioteca da Faculdade de Farmácia (bff@ndc.uff.br) on 2017-03-23T19:00:13Z No. of bitstreams: 1 Peçanha, Bruna Rachel de Britto [Dissertação, 2012].pdf: 3907379 bytes, checksum: f2acabc3c1c39363b86f0d651d6b5936 (MD5) / Made available in DSpace on 2017-03-23T19:00:13Z (GMT). No. of bitstreams: 1 Peçanha, Bruna Rachel de Britto [Dissertação, 2012].pdf: 3907379 bytes, checksum: f2acabc3c1c39363b86f0d651d6b5936 (MD5) / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / Polímeros de impressão molecular (MIPs) foram sintetizados e aplicados como adsorventes na técnica de extração em fase sólida (EFS). O método de polimerização por precipitação foi utilizado para a síntese dos polímeros, devido à simplicidade de preparo, altos rendimentos e obtenção de partículas mais uniformes, devido a não trituração do polímero. O MIP foi sintetizado com ácido metacrílico (MAA) como monômero funcional, trimetacrilato de trimetilolpropano (TRIM) e dimetacrilato de etilenoglicol (EDMA) como agentes de reticulação e o cloridrato de amilorida (AMI) foi escolhido como molécula-molde. Diferentes proporções de MAA, TRIM, EDMA, volume e tipo de solvente foram utilizadas para ajuste das condições ideais de síntese. Os MIP foram avaliados quanto à capacidade de adsorção comparando-se a polímeros sintetizados na ausência da molécula-molde (NIP, polímeros não impressos). O solvente de elevada polaridade empregado na síntese (THF:MeOH:H2O) permitiu o emprego da técnica para moléculas polares como AMI. O controle no volume de solvente permitiu a obtenção de partículas maiores, de modo que a EFS foi realizada em condições usuais, o que confere um potencial para aplicação dessa técnica de polimerização na preparação de adsorventes para EFS. O polímero que apresentou maior capacidade adsortiva no ensaio realizado em tampão citrato-acetato pH 6,5 foi o MIP/NIP 12 (AMI:MAA:TRIM 1:8:10), com uma taxa média de adsorção de 83 e 88% para NIP e MIP, respectivamente. A adsorção foi elevada devido a interação iônica entre MAA e AMI promovida pelo controle de pH, porém foi não específica. O polímero MIP/NIP 12 foi aplicado como adsorvente na EFS, onde a recuperação de AMI foi avaliada nos resíduos de carregamento e eluição com solventes. O carregamento com tampão citrato-acetato pH 6,5 foi o ideal, favorecendo a interação iônica do polímero com o analito. A eluição total de AMI do cartucho somente ocorre após lavagem com o solvente na presença de ácido, que protona os grupos carboxila do polímero, rompendo assim a interação iônica com o analito / Molecularly imprinted polymers (MIPs) were synthesized and applied as adsorbents in solid-phase extraction technique (SPE). The polymers have been synthesized by precipitation polymerization method because of its simplicity, high yields and good control of final size and shape of particles. MIP was synthesized using methacrylic acid (MAA) as functional monomer, trimethylolpropane trimethacrylate (TRIM) and ethyleneglycol dimethacrylate (EDMA) as cross-linker and amiloride hydrochloride (AMI) was chosen as template. Different ratios of MAA, TRIM and EDMA, volume and type of solvent were used to adjust the optimal synthesis conditions. The MIP were tested for adsorption capacity compared to the polymers synthesized in the absence of template molecule (NIP, non-imprinted polymers). The polar solvent mixture used (THF:MeOH:H2O) allowed the synthesis of MIP of polar molecules as AMI. The solvent volume control afforded the larger particles so the SPE was performed in the usual conditions, giving a potential application for this polymerization technique in the preparation of adsorbents for SPE. The polymers with higher adsorption capacity at the test performed in citrateacetate buffer pH 6,5 was MIP/NIP 12 (AMI:MAA:TRIM 1:8:10) with adsorption rate of 83 and 88% for NIP and MIP, respectively. The recognition of MIP was due to ionic interaction between MAA and AMI promoted by pH control, but was not specific. The polymer MIP/NIP 12 was used as a solid-phase extraction sorbent and the recoveries of AMI was evaluated using different loading and elution conditions. The loading with buffer citrate-acetate pH 6,5 was optimal, due to ionic interaction of the polymer with the analyte. Total elution of AMI bound to the polymers only occurs after washing with a acid-containing solvent, because of protonation of the carboxyl groups of the polymer and disrupting the ionic interaction with the analyte

Un (bio)capteur classique est principalement composé de deux éléments essentiels : une couche réceptrice sensible à l’analyte à laquelle on s’intéresse et un transducteur qui permet de convertir une stimulation chimique / biologique en un signal physique mesurable. Dans le cas idéal, un capteur ne doit pas nécessiter de marquage de la cible, doit posséder de très grandes sensibilité et sélectivité envers elle, ne requiert qu’une faible quantité de cette dernière et doit présenter un temps de réponse très court. Au vu de ces critères, les microsystèmes électromécaniques (MEMS) sont des candidats très prometteurs dans le développement de capteurs. Les polymères fonctionnels, tels que les polymères à empreinte moléculaire (MIPs), sont une approche très intéressante dans l’utilisation des MEMS car ils peuvent être intégrés dans des technologies existantes de MEMS à base de silicium ou complètement remplacer ces technologies. Le but de cette thèse porte sur le développement d’un capteur MEMS composé de polymères (fonctionnels). Un chapitre initial (chapitre 2) introduit des nouveaux systèmes de fabrication de polymères fonctionnels. Des biopuces composées de MIPs imprimés par jet d’encre sont présentées ainsi qu’une technique basée sur la polymérisation radicale contrôlée qui permet le dépôt d’un fin enrobage de MIPs sur des microstructures. La deuxième partie de ce chapitre présente la fabrication de polymères à empreinte moléculaire par stéréolithographie deux-photons, qui peut être vue comme une extension de l’impression 3D. Afin d’illustrer cette technologie de prototypage rapide, deux capteurs composés de MIPs sont présentés : un capteur à grille de diffraction et un capteur en microlevier. Les deux principaux chapitres de ce manuscrit (chapitre 3 et 4) se focalisent sur le développement d’un nouveau concept de fabrication pour les capteurs MEMS. Ce concept est basé sur la polymérisation d’une poutre à fort ratio de forme à l’extrémité d’une fibre optique de télécommunication. Cette poutre a été mise en vibration à sa résonnance et a ainsi pu être utilisée comme un capteur à base de levier. Le capteur en polymère a permis l’intégration de MIPs comme élément récepteur et la reconnaissance sélective de l’antibiotique enrofloxacine. De plus, un nouveau système de mesure intégré est présenté dans le chapitre 4. Ce système de mesure intègre la fibre optique en guidant un rayon laser à travers elle ainsi qu’à travers le levier qui y est attaché.Le rayon lumineux sortant est ensuite focalisé sur une photodiode sensible à la position du rayon lumineux, permettant ainsi la mesure du spectre de résonance de la poutre en polymère. Ce système de mesure est caractérisé et ses performances sont présentées au travers de la détection de masse du levier en polymère et de mesures faites en milieu liquide. / A classical (bio)sensor consists of two key components: A receptor layer that detects the analyte of interest and the transducer which converts the chemical / biological stimuli into a physical measurable signal. Ideally a sensor is label-free, highly sensitive and selective towards the target, requires low sample amount and shows a fast response time. Regarding these criteria microelectromechanical systems (MEMS) offer great potential for the sensor development. One interesting approach for this development are functional polymer materials, such as molecularly imprinted polymers (MIPs), that can be either integrated to existing MEMS based on silicon or completely replace the silicon technology. The emphasis of this thesis is focused on the development of a MEMS sensor based on (functional) polymers. In an initial chapter (chapter 2) new fabrication schemes for functional polymers are introduced. Inkjet-printed biochips based on MIPs are presented and a technique based on controlled radical polymerization is shown that allows the deposition of thin MIP shells on a microfabricated pattern. In the second part of this chapter the fabrication of molecularly imprinted polymers by two-photon stereolithography is shown which can be seen as an extension of 3dimensional printing. As possible application of this rapid prototyping technology two sensors based on MIPs are introduced a diffraction grating sensor and a microcantilever sensor. The two main chapters of this manuscript (chapter 3 and chapter 4) report the development of a new fabrication concept for MEMS sensors. It is based on the polymerization of a high aspect ratio beam on the extremity of an optical telecommunication fiber which was actuated at resonance and thus could be used as a cantilever sensor. The polymer sensor allowed the integration of MIPs as sensing element and the selective recognition of the antibiotic enrofloxacin. Furthermore, is a new, integrated read-out scheme presented in chapter 4. This read-out scheme integrates the optical fiber, by guiding a probe laser beam through it and attached cantilever beam. The output light beam is then focused on a position sensitive photodiode and thus enabled to monitor the resonance spectra of the polymer beam. The read-out scheme is characterized and its performance is shown by demonstrating the mass sensitivity of the polymeric cantilever beam and by measurements in liquid environments.

Ce travail de thèse avait pour objectif l'élaboration d'un capteur optique pour la détection directe de molécules d'intérêt dans un fluide biologique. Deux stéroïdes et un xéniobiotique (herbicide) ont été choisis en tant que biomarqueurs apparaissant dans des fluides corporels : respectivement l'acétate de cyprotérone, le cortisol et l'acide 2,4 dichlorophénoxyacétique. La partie détection, d'une part, est assurée par les polymères à empreintes moléculaires (MIPs, de l'anglais Molecularly Imprinted Polymers). Ces récepteurs synthétiques sur mesure présentent en effet de nombreuses qualités pour l'intégration dans un capteur. Des polymères à empreintes moléculaires ont ainsi été développés pour les analytes visés. L'optimisation des formulations de polymère a été basée sur des plans d'expériences. La transduction optique, d'autre part, est basée sur la structuration du polymère sous la forme d'un cristal photonique. Des opales ont été fabriquées avec un procédé industrialisable pour permettre la mise en forme du MIP en opale inverse. Ainsi structuré à l'échelle submicronique, le matériau présente une couleur susceptible d'évoluer lors de la détection de l'analyte, et ce, grâce à un changement de conformation (gonflement). Les formulations polymères étudiées ont généré des gonflements réduits mais visibles en spectrophotométrie. Le travail rapporté dans cette thèse consiste donc en l'élaboration de polymères à empreintes moléculaires et leur intégration dans un capteur afin de détecter un analyte de façon directe, rapide et ne nécessitant que des équipements transportables, voire portables. / This thesis aimed at elaborating an optical sensor to detect molecules in a biological fluid. Two steroids and a xenobiotic were identified as biomarkers released in some body fluids: cyproterone acetate, cortisol and 2,4-dichlorophenoxyacetic acid respectively. On one hand, detection was performed by Molecularly Imprinted Polymers (MIPs). These tailor-made synthetic receptors display numerous qualities that foster their integration in sensors. MIPs were therefore developed against the targeted analytes. Formulation optimization was led thanks to experimental designs. On the other hand, optical transduction was made possible thanks to the structuring of a polymer into a photonic crystal. Opals were manufactured with a new process suitable for large scales and were used to mold MIPs in inverse opals. Thus, submicron structures of the polymer are responsible for the color of the sensor. A change of color is triggered by the recognition of the analyte by the polymer (upon swelling). Polymers studied displayed sufficient swelling observed by spectrophotometry. Finally, the work of this thesis consisted in elaborating polymer formulations and their integration in a sensor so as to detect an analyte with direct, rapid and unobtrusive means.