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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
101

Intracellular calcium, preconditioning and regulation of cellular respiration in heart

Liimatta, E. (Erkki) 05 January 2010 (has links)
Abstract Heart muscle has to work constantly throughout the life and its energy metabolism is heavily dependent on a continuous supply of oxygen. Energy metabolism must be effectively regulated to meet the demands of changing workloads in different circumstances. If the oxygen supply is interrupted, the function of the heart is easily disturbed and cells injured. Calcium metabolism is of great importance in these pathological conditions. In this thesis respiratory regulation was studied by non-destructive optical methods in mouse heart. The myoglobin-deficient mouse was used as an experimental model to avoid the artefact caused by intracellular myoglobin. Results show that increased consumption of energy and oxygen lead to concomitant reduction of cytochrome aa3 and oxidation of flavoproteins. This finding supports the view that cell respiration in intact myocardium is dominantly regulated at the level of the respiratory chain. The intracellular Ca2+ accumulation during ischemia is one of the major causes of irreversible ischemia-reperfusion injury. Ischemic preconditioning (IPC) has been shown to protect the heart muscle significantly from ischemic damage. In this thesis Ca2+ accumulation during ischemia and reperfusion was studied in perfused rat heart using Fura-2 as a fluorescent Ca2+ indicator. As there is a significant decrease in intracellular pH during prolonged ischemia, the pH-dependency of Fura-2 signal was taken into account. It was found that IPC attenuates Ca2+accumulation during ischemia and this was connected to a decrease in mitochondrial membrane potential. Both IPC and the pharmacologically induced preconditioning with the mitoKATP opener diaxozide were shown to be associated with increased production of superoxide monitored by means of lucigenin chemiluminescence. The superoxide production correlated with the oxidation-reduction state of flavoproteins. We also describe here a method for measuring of intracellular free Ca2+ in mouse heart during ischemia by simultaneous monitoring of Fura-2 and the pH probe BCECF fluorescence by means of dual wavelength excitation of both probes. The paradoxical decrease of Fura-2 fluorescence during ischemia indicating decreasing intracellular Ca2+ concentration was due to the pH effect on the dissociation constant of the Fura-2-Ca2+ complex. When the pH-dependency of Fura-2 was compensated, an extensive Ca2+ accumulation during ischemia was detected. Much of the previous literature on this subject must be re-evaluated because the pH-dependency of intracellular Ca2+ probes has been largely overlooked.
102

Encapsulation de la myoglobine dans des microsphères de poly(epsilon-caprolactone) : étude des paramètres de formulation et de procédé sur les propriétés des particules et sur l’intégrité protéique / Myoglobin encapsulation in PCL-microspheres : study of formulation and process parameters on particle properties and protein integrity

Ruffin, Émilie 23 April 2010 (has links)
L'encapsulation de protéines pose de nombreuses difficultés liées à leurs propriétés physicochimiques, leur sensibilité aux conditions environnementales et opératoires. La structure 3D spécifique de chaque protéine étant directement liée à son activité biologique, un contrôle de l'intégrité protéique est indispensable pour assurer l'efficacité et la sécurité des systèmes formulés. Dans cet optique, l'encapsulation par émulsion multiple a été appliquée à une protéine modèle : la myoglobine (Mb). Le but de cette thèse a été l'étude du procédé d'encapsulation à travers 3 objectifs. Le premier fut d'étudier l'influence de paramètres de formulation sur les propriétés des particules obtenues et sur la conformation de la Mb. Les mesures en spectrométrie UV/Vis. et le calcul des principaux rapports d'absorbance ont constitué une méthode de contrôle fiable et rapide. Le second fut de valider la pertinence et de montrer les limites de cette méthode en la comparant à une seconde méthode utilisant des mesures conductimétriques. Enfin, l'étape de solidification des particules par élimination du solvant ainsi que le changement de solvant ont été étudiés.. Des microsphères creuses de 15μm avec un rendement d'encapsulation de 36% ont pu être obtenues tout en maintenant la conformation native de la Mb. L'emploi de polymère de masse moléculaire élevée et un taux d'élimination de solvant trop rapide sont 2 paramètres altérants significativement la protéine. Ces travaux ouvrent la voie au développement de transporteurs d'O2 utilisables par exemple dans le cas de pathologies musculaires / Protein encapsulation results in several problems related to their physicochemical properties, their sensitivity to environmental conditions and operating procedures. The specific 3D structure being directly linked to their biological activity, monitoring of protein integrity is crucial to ensure the efficacy and security of formulations. In this context, the multiple emulsion method was applied to a model protein: myoglobin (Mb). The aim of this thesis was to study the encapsulation process through 3 objectives. The first was to study the influence of formulation parameters on the particle properties and the conformation of Mb. Measurements by UV/Vis. spectrometry and calculation of key absorbance ratios established a reliable and rapid method for protein monitoring. The second was to validate the pertinence and show the limits of this method by comparing it to a second one using conductimetry measurements. Finally, the particle solidification by solvent removal and the solvent exchange were studied. The process maintains the Mb native conformation in Hollow microspheres of 15μm in diameter and an encapsulation efficiency of 36% were obtained, while keeping intact the Mb native conformation. The use of high molecular weight polymer and a fast solvent removal rate are 2 parameters inducing significant protein alteration. This work paves the way for the development of O2 carriers for muscular diseases for example
103

Mecanismo de oxidação aeróbica de acetoacetato e 2-metilacetoacetato catalisada por mioglobina: implicações em desordens cetogênicas / Mechanism of the aerobic oxidation of acetoacetate and 2- methylacetoacetate catalyzed by Mb: implications for ketogenic disorders

Douglas Ganini da Silva 20 April 2011 (has links)
Acetoacetato (AA) e 2-metilacetoacetato (MAA) são compostos β-cetoácidos acumulados em diversas desordens metabólicas como no diabetes e na isoleucinemia, respectivamente. Examinamos o mecanismo de oxidação aeróbica de AA e MAA iniciada por intermediários reativos de mioglobina de coração de cavalo (Mb) gerados pela adição de H2O2. Uma rota quimioluminescente que envolve um intermediário dioxetânico cuja termólise gera espécies α-dicarbonílicas (metilglioxal e biacetilo) foi proposta e estudada. Emissão de luz ultra fraca acompanha a reação, e sua intensidade aumenta linearmente pelo aumento da concentração tanto de Mb (10-500 µM) quando AA (10-100 mM). Estudos de consumo de oxigênio mostraram que MAA é, como esperado, quase uma ordem de grandeza mais reativo que AA. Estudos de EPR com captação de spin, utilizando MNP, possibilitaram detectar adutos de MAA atribuíveis a um radical centrado no Cα (aN = 1.55 mT) e ao radical acetila (aN = 0.83 mT). O sinal do radical acetila é totalmente suprimido por sorbato, um conhecido e eficiente supressor de espécies tripletes, o que é consistente com uma rota reacional envolvendo um intermediário dioxetânico. Clivagem-α da ligação carbonila-carbonila do produto biacetilo triplete produziria, de fato, radicais acetila. Além disso, utilizando AA como substrato para Mb/H2O2, um sinal de EPR atribuível ao aduto MNP-AA• (aN = 1.46 mT e aH = 0.34 mT) foi observado e confirmado por efeito isotópico. O consumo de oxigênio e o rendimento de compostos α-dicarbonílicos foram dose-dependentes à concentração de AA ou MAA (1-50 mM) bem como à concentração de H2O2 adicionado às misturas de reação contendo Mb (até 1:10 quando medido o consumo de oxigênio, e até 1:25 quando medido o rendimento de compostos α-dicarbonílicos) e tert-butilhidroperóxido (até 1:200). Os perfis de pH (5,8-7,8) para consumo de oxigênio e rendimento de compostos α-dicarbonílicos mostraram maiores rendimentos para baixos valores de pH, indicativo de ferrilMb formada no ciclo peroxidático da proteína. Avaliando os níveis de lesão de Mb, os β-cetoácidos diminuíram o nível de desorganização protéica na estrutura secundária e terciária elicitada por H2O2. Ainda, houve maior preservação da estrutura primária da proteína, sendo que MAA protegeu mais em comparação a AA, embora quando utilizado este último composto, foi mostrado que há acetilação dose-dependente de Mb. Acetoacetato aumentou a velocidade de descoramento da hemeproteína, provavelmente por ataque de espécies tripletes geradas no sistema. Músculos de rato, plantar e sóleo, expostos ex vivo a concentrações citotóxicas de glicose oxidase (GOX, gera H2O2 em fluxo), foram protegidas pelos ésteres etílicos AAE e MAAE. Foi detectado biacetilo no meio intracelular em músculos expostos a MAAE e GOX. A concentração deste composto α-dicarbonílico é claramente relacionada à abundância de Mb em cada um dos tipos de músculos estudados. Em resumo, Mb tratada com metabólitos β-cetoácidos (AA e MAA) gera radicais centrados em carbono e produtos α-dicarbonílicos altamente reativos no estado triplete. Experimentos realizados com tecido muscular ex vivo sugerem que esta reação possivelmente ocorra in vivo. Levantamos a hipótese de que a geração de espécies carbonílicas reativas e seus adutos em condições de desbalanço metabólico possam contribuir para a compreensão das bases moleculares de desordens cetogênicas. / Acetoacetate (AA) and 2-methylacetoacetate (MAA) are β-ketoacids accumulated in several metabolic disorders such as diabetes and isoleucinemia, respectively. Here we examine the mechanism of AA and MAA aerobic oxidation initiated by the reactive enzyme intermediates formed by the reaction of muscle horse myoglobin (Mb) with H2O2. A chemiluminescent route involving a dioxetane intermediate whose thermolysis yields triplet α-dicarbonyl species (methylglyoxal and diacetyl) is envisaged. Accordingly, the ultraweak light emission that accompanies the reaction increases linearly by raising the concentration of both Mb (10-500 µM) and AA (10- 100 mM). Oxygen uptake studies revealed that MAA is, expectedly, almost one order of magnitude more reactive than AA. EPR spin-trapping studies with MNP detected spin adducts from MAA attributable to an α-carbon-centered radical (aN = 1.55 mT) and to an acetyl radical (aN = 0.83 mT). As the acetyl radical signal is totally suppressed by sorbate, a well-known efficient triplet species quencher, the dioxetane hypothesis seems to be reliable. The α-cleavage of the carbonyl-carbonyl bond of a putative excited triplet diacetyl product would, in fact, leads to an acetyl radical. Furthermore, using AA as substrate for Mb/H2O2, an EPR signal assignable to a MNP-AA• adduct (aN = 1.46 mT and aH = 0.34 mT) was observed and confirmed by isotope effect. Oxygen consumption and α-dicarbonyl yield were also dependent on AA or MAA concentrations (1-50 mM) as well as on the concentration of peroxide added to the Mb-containing reaction mixtures: H2O2 (up to 1:10 when measuring oxygen uptake and up to 1:25 when measuring the α-dicarbonyl yield) and t-butOOH (up to 1:200). The pH profiles (5.8-7.8) of oxygen consumption and α-dicarbonyl yield show higher reaction rates at lower pHs, indicative of a ferrylMb intermediate. Evaluating Mb lesion, both β-ketoacids reduced disorganization of the secondary and tertiary protein structure elicited by H2O2. Therefore, Mb primary structure was more preserved, and MAA was more protective than AA. Moreover using the later compound, it was shown that Mb acetylation is dose-dependent. Acetoacetate increased the rate of the hemeprotein bleaching, probably due to the attack of triplet products generated in the system. Plantaris and soleous rat muscles exposed to damaging concentrations of glucose oxidase (GOX, generates H2O2 in flux), was cytoprotected by AAE and MAAE. Intracellular diacetyl was detected in muscle samples exposed to MAAE and GOX. The α-dicarbonyl concentration is clearly related to the Mb abundance in the muscle types. In summary, Mb treated with peroxides reacts with β-ketoacid metabolites (AA and MAA), yielding carbon-centered radicals and highly reactive α-dicarbonyl products in the triplet state. Experiments carried out ex vivo with muscle tissue showed that this reaction possibly occurs in vivo. A new route for generation and accumulation of carbonyl reactive species and adducts is here proposed to occur in unbalanced metabolic situations, such as is the case of ketogenic disorders.
104

Model analysis of oxygen transport and metabolism in skeletal muscle: responses to a change in energy demand

Spires, Jessica Rose 19 August 2013 (has links)
No description available.
105

Modification d’acides aminés et de protéines en milieux aqueux sous faisceau d'ions / Amino acids and proteins modification under ion beams in aqueous medium

Ludwig, Nicolas 12 October 2018 (has links)
Cette thèse s’inscrit dans une volonté d’améliorer la compréhension des mécanismes fondamentaux de radiolyse de biomolécules par des ions accélérés, à l’échelle moléculaire. Ainsi, les ions étudiés ont été de différentes nature (H+, He2+, C6+) et de différentes énergies, correspondant à une gamme de densité de dépôt d’énergie allant de 0,3 à 1000 eV/nm.Dans le vivant, l’eau ayant une place prépondérante, la compréhension de la radiolyse de l’eau est essentielle. L’espèce la plus réactive produite en milieu aéré, le radical hydroxyle (HO•) a été quantifiée en utilisant une sonde spécifique, l’acide 3-coumarine-carboxylique.Les dégâts indirects aux biomolécules, via les espèces issues de la radiolyse de l’eau, ont été étudiés en solution aqueuse diluée sur deux systèmes : un acide aminé, la phénylalanine et une protéine, la myoglobine. Les effets directs de radiolyse ont été étudiés sur la myoglobine en gels concentrés hydratés. Les phénomènes de radiolyse ont été caractérisés pour décrire les mécanismes en jeu et les produits issus de la radiolyse de la phénylalanine ont été systématiquement identifiées et quantifiées. / The goal of this thesis is to achieve a better understanding of fundamental mechanisms of the radiolysis of biomolecules by accelerated ions, at the molecular scale. To do so, different type of ions have been used (H+, He2+, C6+) at various energies, corresponding to densities of energy deposition from 0,3 to 1000 eV/nm.The main component in biological systems is water. Therefore, the comprehension of the water radiolysis under ions irradiation is essential. One of the most reactive species produced in aerated conditions, the hydroxyl radical (HO•), has been quantified using a specific probe, the 3- carboxylic acid coumarin.Indirect effects of radiolysis on biomolecules, involving water radiolysis species, have been studied in dilute aqueous solutions on two different systems: phenylalanine, an amino acid, and a protein, myoglobin. Direct radiolysis effect were studied on concentrated hydrogels of myoglobin ad other proteins. Elucidation of radiolysis mechanisms and quantification of phenylalanine radiolysis products were systematically performed.
106

Titania Nanotubes For Biotechnological Applications

Murria, Priya 07 1900 (has links) (PDF)
Over the past few decades, inorganic nanostructured materials have elicited a lot of interest due to their high surface-to-volume ratio and many size dependent properties which stem from their nanoscale dimensions. Owing to these distinct properties, they have found applications in widespread fields like catalysis, energy storage, electronics, and biotechnology. In the field of biotechnology, nanotubes and mesoporous materials are attractive vehicles for drug delivery because of their hollow and porous structures and facile surface functionalization. Their inner void can take up large amounts of drug as well as act as gates for the controlled release of drug. These hollow structures can also be used for confining biomolecules like proteins and peptides. The study on protein conformation in biocompatible materials is very important in materials sciences for the development of new and efficient biomaterials(sensors, drug delivery systems or planted devices). Titania(TiO2)has been widely explored for applications in photovoltaic cells, batteries, desalination, sensing, and photocatalysis, to name only a few. The work presented in this thesis focuses on titania based nanostructures for drug delivery and protein confinement. First part of the work focusses on synthesis and characterization of Fe-doped TiO2 nanotubes. Fe-doped TiO2 nanotubes were demonstrated as controlled drug delivery agents. In vitro cytotoxic effects of Fe-doped titania nanotubes were assessed by MTT assay by exposing Hela cell line to the nanotubes. Second part of the work focusses on synthesis and characterization of TiO2 nanotubes by two synthesis procedures, namely hydrothermal and sol-gel template synthesis. Myoglobin, a model globin protein was encapsulated in hydrothermally synthesized TiO 2 nanotubes(diameter 5 nm) and sol-gel template synthesized TiO2 nanotubes(diameter 200 nm). Effect of encapsulating myoglobin these nanotubes was studied. The electrochemical activity and structure of myoglobin were studied by cyclic voltammetry and circular dichroism respectively. Direct electron transfer was found to be enhanced upon confinement in 200 nm diameter nanotubes. No such enhancement was observed upon encapsulation in hydrothermally synthesized nanotubes. In addition to this, the thermal stability of myoglobin was found to be enhanced upon confinement inside 200 nm diameter TiO 2 nanotubes.
107

Bovine and Porcine Adipogenesis, Myogenesis, and Tissue Engineering Strategies to Improve Flavor and Pigmentation of Cell-Based Meat

Krieger, Jessica 02 December 2020 (has links)
No description available.
108

Biochemistry Students' Understandings of Enzyme-Substrate Interactions as Investigated through Multiple Representations and the Enzyme-Substrate Interactions Concept Inventory

Linenberger, Kimberly J. 18 November 2011 (has links)
No description available.
109

Acute and chronic individualised psychophysiological stress assessment of elite athletes through non-invasive biochemical analysis.

Lindsay, Angus John Chisholm January 2015 (has links)
Intense exercise is known to cause alterations in the psychophysiological status of an athlete. Monitoring the health and recovery of an athlete is imperative for the maintenance of performance and reduced fatigue and injury incidence. The physicality associated with select sports results in significant elevations and suppression of psychophysiological biomarkers that are often modulated by game-related impacts, intense training regimes and psychosocial aspects associated with the professional era. The aim of the studies outlined in this thesis were to determine the effectiveness of selected “stress” markers in several sports that result in significant “stress”, and quantify the level of acute and chronic “stress” following individual games and competitions to improve athlete management and recovery. Study one aimed at developing a new strong-cation exchange high performance liquid chromatography (SCX-HPLC) method for the detection and quantification of urinary pterins and creatinine in a body-building cohort completing high intensity resistance training. The method had an intra- and inter-assay variability of 3.04 % and 5.42 % respectively, with visibly clear peaks and no tailing. Urinary neopterin (NP) and 7,8-dihydroneopterin during a week of competitive natural body-building did not significantly change indicating no alteration in immune system function and oxidative stress. It did provide evidence for the use of specific gravity as a similarly reliable method for urine volume correction following exercise. Study two focused on a playoff game of elite amateur rugby. The time course changes of NP, cortisol, salivary immunoglobulin A (sIgA) and myoglobin in 11 elite amateur rugby players were measured up to 86 hours post-game. Cortisol increased 4-fold, myoglobin 2.85-fold, NP 1.75-fold and total NP 2.3-fold, all significant, whilst sIgA did not change. All markers returned to baseline within 17 hours providing valuable information for sample collection schedule optimization. Respiratory elastance was also measured by ventilation for the assessment of exercise induced lung inflammation/injury following the game (Chapter three). There was an increase in elastance in selected individuals that did not correlate with either global positioning system (GPS) or impact data. It was shown however, that a ventilator is capable of measuring respiratory changes in a conscious and healthy individual. Study three focused on the final three games of professional rugby in the 2013 ITM Cup. The acute and cumulative changes in the same four markers were analysed following three home games. There were significant increases in NP, total NP, cortisol and myoglobin along with significant suppression of sIgA (p < 0.05). Large intra- and inter-individual variation existed between players with changes associated with total impacts. Moreover, impact induced muscle damage may account for changes in oxidative status. Specific gravity (SG) was shown to be a more reliable marker for urine volume correction in comparison to creatinine; while some players showed signs of cumulative stress. Study four examined stress in a professional team throughout the 22 week 2014 Super 15 competition. Part one investigated changes in oxidative stress and muscle damage markers to solidify the muscle damage/oxidative status theory postulated in the previous study. Experimental evidence showed iron and myoglobin are separately capable of oxidizing 7,8-dihydroneopterin to NP in vitro. It was then identified that players who suffered the greatest muscle damage as a result of impacts also had the greatest change in oxidative status (NP). This evidence suggests rugby union induces significant alterations in oxidative status that may be exacerbated by the impact induced release of myoglobin. Part two measured urinary NT-proBNP during the last two consecutive home games to identify whether rugby union causes significant cardiovascular stress and if the pre to post-game change can be explained by GPS technology. Significant individualized elevations were observed in games one and two which did not correlate with any GPS measurements or impacts. Concentrations returned to normal ~ 36 hours post-game suggesting no permanent damage to cardiac muscle had occurred. The lack of correlation suggests GPS technology is not an accurate measure of cardiovascular stress in professional rugby union. Part three involved the measurement of cortisol, total NP and sIgA throughout the season to assess the degree of cumulative stress. Samples were taken at regular intervals ~ 36 hours post-game for 22 weeks. Extreme inter-individual variation was present. Select individuals showed continual elevation in immune system activation and psychophysiological stress, whilst others presented with a continual decline in immune system function. Collectively however, minor deviations from baseline in all markers were observed and participation in long distance travel did not significantly affect the psychophysiological status of the group. Together this suggests a season does not cause an accumulation in psychophysiological stress, although careful individual player analysis is warranted. Understanding rugby union positional demands is essential for training program specification and position specific development of players. Part four used GPS, video-analysis and biochemical analysis to identify positional demands in five regular season games. Forwards tended to be involved in more impacts and covered less distance, while backs covered more distance and carried the ball into contact more regularly. There was no difference in the psychophysiological status between positions indicating both aspects of stress (impacts and distance covered) may induce a similar response. Alternatively, individual biological variation may be solely responsible for this change suggesting careful consideration should be given when using traditional work-load measures such as GPS when quantifying “stress”. Part five assessed the effectiveness of varied recovery interventions. Total NP, cortisol, myoglobin and sIgA were measured pre- post- and ~ 36 hours post game to identify which intervention was most effective at returning players to a psychophysiological state that allowed for the resumption of normal training. Findings concluded the immediate post-game strategy employed by the team (cold bath, consumption of protein and carbohydrates, compression garments and eight hours sleep) seemed to provide the greatest psychophysiological improvement regardless of the “next-day” intervention. There was large inter-individual variation and players were still in a state of recovery ~ 36 hours post-game as indicated by the elevated total NP and sIgA concentrations. Study five had four aspects. Develop a new, cost-effective and simple reverse phase HPLC (RP-HPLC) method for the quantification of urinary myoglobin in a clinically relevant range, quantify the level of structural stress following a simulated mixed martial arts (MMA) contest, determine whether cold water immersion attenuates the level of inflammation and muscle damage following a contest, and whether this hypothesized attenuation may be explained by cryotherapy induced mononuclear cell activation suppression in vitro. The RP-HPLC method had an intra- and inter-assay variations from 0.32 - 2.94 %. Linearity was in the range of 5 – 1000 µg/mL which detected significant increases in urinary myoglobin following the MMA contest. Total NP was found to significantly increase following the contest and return to approximately pre-contest levels 24 hours later for the passive group only. Cold water immersion was further found to attenuate the total NP increase in the first two hours post-contest solidifying its use as a recovery technique following intense exercise, while cryotherapy significantly suppressed T-cell activation. This study provides a reliable and repeatable assay for muscle damage quantification in a clinically relevant range, evidence of the physicality associated with MMA, and indicates cold water immersion is a reliable recovery intervention that may impart its positive benefits through T-cell suppression. The data generated by these investigations highlights the necessity for individual physiological analysis. Group data often masks the extreme variation that exists in clinical and exercise trials where treatment and management of athletes is conducted for recovery and performance. Biochemical analysis provides an added sophistication of work-load and psychophysiological assessment that common technological methods cannot emulate. With a lack of correlation between the quantitative changes in specific non-overlapping biomarkers and GPS, video-analysis and questionnaires, it would seem pertinent to develop a non-invasive quantitative approach in elite sport to understand the level of exercise-induced psychophysiological stress for the precise management of athletes.

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